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Search of human proteins with 50409691
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
(338 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens] 662 0.0
gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens] 632 0.0
gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens] 624 e-179
gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens] 620 e-178
gi|33356174 pinin, desmosome associated protein [Homo sapiens] 77 2e-14
gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens] 76 5e-14
gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens] 73 4e-13
gi|42560244 peptidylprolyl isomerase G [Homo sapiens] 72 7e-13
gi|169166609 PREDICTED: similar to ribonucleic acid binding prot... 68 1e-11
gi|113415994 PREDICTED: similar to ribonucleic acid binding prot... 68 1e-11
gi|6857826 RNA-binding protein S1, serine-rich domain [Homo sapi... 68 1e-11
gi|18379334 RNA-binding protein S1, serine-rich domain [Homo sap... 68 1e-11
gi|113415504 PREDICTED: similar to ribonucleic acid binding prot... 66 4e-11
gi|169166499 PREDICTED: similar to ribonucleic acid binding prot... 66 4e-11
gi|113415498 PREDICTED: similar to ribonucleic acid binding prot... 66 4e-11
gi|88973230 PREDICTED: similar to ribonucleic acid binding prote... 66 4e-11
gi|40807452 peroxisome proliferator-activated receptor gamma, co... 65 7e-11
gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens] 65 9e-11
gi|116089325 splicing factor, arginine/serine-rich 12 isoform a ... 65 9e-11
gi|21040255 splicing factor, arginine/serine-rich 12 isoform b [... 65 9e-11
gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens] 64 3e-10
gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo sapi... 63 3e-10
gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens] 63 3e-10
gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens] 63 3e-10
gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens] 63 4e-10
gi|52426743 cisplatin resistance-associated overexpressed protei... 62 6e-10
gi|19923485 cisplatin resistance-associated overexpressed protei... 62 6e-10
gi|27734775 hypothetical protein LOC286499 [Homo sapiens] 62 7e-10
gi|168229156 NFKB activating protein [Homo sapiens] 62 1e-09
gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens] 62 1e-09
>gi|50409691 SRp25 nuclear protein isoform 4 [Homo sapiens]
Length = 338
Score = 662 bits (1708), Expect = 0.0
Identities = 338/338 (100%), Positives = 338/338 (100%)
Query: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL
Sbjct: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA
Sbjct: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSS 180
RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSS
Sbjct: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSS 180
Query: 181 SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA
Sbjct: 181 SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
Query: 241 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR 300
LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR
Sbjct: 241 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR 300
Query: 301 LIKGDGEVLEEIVTKERHREINKVGVAPLPAIRPQLCL 338
LIKGDGEVLEEIVTKERHREINKVGVAPLPAIRPQLCL
Sbjct: 301 LIKGDGEVLEEIVTKERHREINKVGVAPLPAIRPQLCL 338
>gi|50409707 SRp25 nuclear protein isoform 2 [Homo sapiens]
Length = 341
Score = 632 bits (1630), Expect = 0.0
Identities = 323/323 (100%), Positives = 323/323 (100%)
Query: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL
Sbjct: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA
Sbjct: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSS 180
RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSS
Sbjct: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSS 180
Query: 181 SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA
Sbjct: 181 SSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
Query: 241 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR 300
LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR
Sbjct: 241 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR 300
Query: 301 LIKGDGEVLEEIVTKERHREINK 323
LIKGDGEVLEEIVTKERHREINK
Sbjct: 301 LIKGDGEVLEEIVTKERHREINK 323
>gi|50409738 SRp25 nuclear protein isoform 3 [Homo sapiens]
Length = 352
Score = 624 bits (1608), Expect = e-179
Identities = 323/334 (96%), Positives = 323/334 (96%), Gaps = 11/334 (3%)
Query: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL
Sbjct: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA
Sbjct: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ-----------ERSK 169
RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ ERSK
Sbjct: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEERSK 180
Query: 170 QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 229
QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG
Sbjct: 181 QKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG 240
Query: 230 KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR 289
KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR
Sbjct: 241 KEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIR 300
Query: 290 KVVDPETGRTRLIKGDGEVLEEIVTKERHREINK 323
KVVDPETGRTRLIKGDGEVLEEIVTKERHREINK
Sbjct: 301 KVVDPETGRTRLIKGDGEVLEEIVTKERHREINK 334
>gi|50409756 SRp25 nuclear protein isoform 1 [Homo sapiens]
Length = 360
Score = 620 bits (1600), Expect = e-178
Identities = 323/342 (94%), Positives = 323/342 (94%), Gaps = 19/342 (5%)
Query: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL
Sbjct: 1 MERAGPAGEEGGAREGRLLPRAPGAWVLRACAERAALEVGAASADTGVRGCGARGPAPLL 60
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA
Sbjct: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ--------------- 165
RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ
Sbjct: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQGRKASTAPGAEASPS 180
Query: 166 ----ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 221
ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK
Sbjct: 181 PCITERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 240
Query: 222 RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW 281
RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW
Sbjct: 241 RKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW 300
Query: 282 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINK 323
DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINK
Sbjct: 301 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINK 342
>gi|33356174 pinin, desmosome associated protein [Homo sapiens]
Length = 717
Score = 77.4 bits (189), Expect = 2e-14
Identities = 44/108 (40%), Positives = 66/108 (61%), Gaps = 3/108 (2%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
++ RSRSR R+R + S+ R + S +S + S S+S S +RSSSSSSSS+S
Sbjct: 556 TKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSG 615
Query: 189 SSSSSSSSSSSSSSDGRKK---RGKYKDKRRKKKKKRKKLKKKGKEKA 233
SSS SSSS+SSSS+ R + RG +D++ ++ RK+ G E++
Sbjct: 616 SSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERS 663
Score = 64.3 bits (155), Expect = 1e-10
Identities = 49/161 (30%), Positives = 75/161 (46%), Gaps = 9/161 (5%)
Query: 62 SAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRAR 121
S GRAR+ T R++ S ++ S ++ ++ +SS + S G +R
Sbjct: 560 SRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSR 619
Query: 122 GAMAHVGSRKRSRSRSRSRGRGSEKRKKKS----RKDTSRNCSASTSQERSKQKARRRTR 177
+ + S SRSRSR RG +++ ++S R+DTS S + SK + R T+
Sbjct: 620 DSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTS---GLERSHKSSKGGSSRDTK 676
Query: 178 SSSSSSSSS--SSSSSSSSSSSSSSSSDGRKKRGKYKDKRR 216
S +S S S S SS S SS R ++ KDKRR
Sbjct: 677 GSKDKNSRSDRKRSISESSRSGKRSSRSERDRKSDRKDKRR 717
Score = 50.4 bits (119), Expect = 2e-06
Identities = 51/176 (28%), Positives = 70/176 (39%), Gaps = 29/176 (16%)
Query: 126 HVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSS 185
H S+ ++++RSRSRGR K TS+ RS+ SSSSS
Sbjct: 549 HPESKSKTKTRSRSRGRARNK----------------TSKSRSR-----------SSSSS 581
Query: 186 SSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPS 245
SSSSSS+SSSS SSSSS R + +E++ G +
Sbjct: 582 SSSSSSTSSSSGSSSSSGSSSSRSSSSSSSSTSGSSSRDSSSSTSSSSESRSRSRGRGHN 641
Query: 246 LDQWHRSAGEEE--DGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRT 299
D+ HR + + + D L KS TK D RK E+ R+
Sbjct: 642 RDRKHRRSVDRKRRDTSGLERSHKSSKGGSSRDTKGSKDKNSRSDRKRSISESSRS 697
Score = 41.6 bits (96), Expect = 0.001
Identities = 40/158 (25%), Positives = 63/158 (39%), Gaps = 15/158 (9%)
Query: 86 SRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRS-RSRSRSRGRGS 144
+R SR R + S K+R S + + GS S S SRS S
Sbjct: 558 TRSRSRGRARNKTS-------KSRSRSSSSSSSSSSSTSSSSGSSSSSGSSSSRSSSSSS 610
Query: 145 EKRKKKSRKDTSRNCSAST-----SQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSS 199
S +D+S + S+S+ S+ R + R+ RS +S S SS
Sbjct: 611 SSTSGSSSRDSSSSTSSSSESRSRSRGRGHNRDRKHRRSVDRKRRDTSGLERSHKSSKGG 670
Query: 200 SSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQ 237
SS D K K K+ R +K+ + + GK + +++
Sbjct: 671 SSRD--TKGSKDKNSRSDRKRSISESSRSGKRSSRSER 706
Score = 38.9 bits (89), Expect = 0.007
Identities = 40/186 (21%), Positives = 78/186 (41%), Gaps = 17/186 (9%)
Query: 104 PLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSAST 163
P++ LSGP GGR RG++ R S S G K+ R+ +
Sbjct: 39 PIQARLLALSGPGGGRGRGSLL------LRRGFSDSGGGPPAKQ---------RDLEGAV 83
Query: 164 SQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRK 223
S+ +++ RR +R S + SS ++S R +R +D+ +K K++
Sbjct: 84 SRLGGERRTRRESRQESDPEDDDVKKPALQSSVVATSKE--RTRRDLIQDQNMDEKGKQR 141
Query: 224 KLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDA 283
+ G Q+ + + ++ R E+ V +E++ +++ + EE A
Sbjct: 142 NRRIFGLLMGTLQKFKQESTVATERQKRRQEIEQKLEVQAEEERKQVENERRELFEERRA 201
Query: 284 RQSIIR 289
+Q+ +R
Sbjct: 202 KQTELR 207
Score = 37.0 bits (84), Expect = 0.025
Identities = 21/47 (44%), Positives = 26/47 (55%)
Query: 163 TSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRG 209
T SK K + R+RS + + +S S S SSSSSSSSSS G
Sbjct: 547 TVHPESKSKTKTRSRSRGRARNKTSKSRSRSSSSSSSSSSSTSSSSG 593
Score = 30.4 bits (67), Expect = 2.4
Identities = 23/103 (22%), Positives = 48/103 (46%), Gaps = 10/103 (9%)
Query: 203 DGRKKRGKYKDKRRK--KKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGP 260
+ R +R K+K + + +++K +++GK +++E D AGEEE+
Sbjct: 282 EARPRRQSMKEKEHQVVRNEEQKAEQEEGKVAQREEELEETGNQHNDVEIEEAGEEEEKE 341
Query: 261 VL--------TDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPE 295
+ E++ + Q M+ +EE + R+S ++ PE
Sbjct: 342 IAIVHSDAEKEQEEEEQKQEMEVKMEEETEVRESEKQQDSQPE 384
>gi|226509740 SR-related CTD-associated factor 1 [Homo sapiens]
Length = 1312
Score = 75.9 bits (185), Expect = 5e-14
Identities = 59/189 (31%), Positives = 84/189 (44%), Gaps = 24/189 (12%)
Query: 56 PAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGP 115
PAP A+A G R + R + A + +S P P A + P +K R
Sbjct: 503 PAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPAPASPWDSKKHRSR---- 558
Query: 116 QGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRR 175
R G+ A +R+RSRSRSRSR R R+ SR + RS++K RRR
Sbjct: 559 --DRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSR-------RSRSREKRRRR 609
Query: 176 TRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEA 235
RS+S ++SSSSSS + RGK++D KKKK++ + K +
Sbjct: 610 RRSASPPPATSSSSSSRRE-----------RHRGKHRDGGGSKKKKKRSRSRGEKRSGDG 658
Query: 236 QQVEALPGP 244
+ P P
Sbjct: 659 SEKAPAPAP 667
Score = 48.9 bits (115), Expect = 6e-06
Identities = 44/118 (37%), Positives = 57/118 (48%), Gaps = 9/118 (7%)
Query: 93 APRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRS---RSRSRSRGRGSEKRKK 149
+P P ASSP + GLSG + RG + R+RS S S SR +GS +RK
Sbjct: 719 SPAP-ASSPKREVLYDSEGLSGEE----RGGKSSQKDRRRSGAASSSSSSREKGS-RRKA 772
Query: 150 KSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKK 207
D R+ ++RS +KAR S+ SS SS S SSSSSSS +K
Sbjct: 773 LDGGDRDRDRDRDRDRDRSSKKARPPKESAPSSGPPPKPPVSSGSGSSSSSSSCSSRK 830
Score = 47.4 bits (111), Expect = 2e-05
Identities = 54/241 (22%), Positives = 89/241 (36%), Gaps = 16/241 (6%)
Query: 106 EKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ 165
E+ R P A A A +RK+SR + G E S + AS
Sbjct: 492 ERYRQRSPSPAPAPAPAAAAGPPTRKKSRRERKRSGEAKEAASSSSGTQPAPPAPASPWD 551
Query: 166 ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK- 224
+ + R+ S +SSS+ S S S S S+ S ++RG + R ++K++R++
Sbjct: 552 SKKHRSRDRKPGSHASSSARRRSRSRSRSRSTRRRSRSTDRRRGGSRRSRSREKRRRRRR 611
Query: 225 ----------LKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMK 274
+E+ + + + RS GE+ G +K+ A
Sbjct: 612 SASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRSG---DGSEKAPAPAPP 668
Query: 275 PMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKERHREINKVGVAPLPAIRP 334
P R S R V P L D ++ +T R + + G +P PA P
Sbjct: 669 PSGSTSCGDRDSRRRGAVPPSI--QDLTDHDLFAIKRTITVGRLDKSDPRGPSPAPASSP 726
Query: 335 Q 335
+
Sbjct: 727 K 727
Score = 39.7 bits (91), Expect = 0.004
Identities = 48/182 (26%), Positives = 66/182 (36%), Gaps = 15/182 (8%)
Query: 56 PAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSP--PLPLEKARGGLS 113
P P +S+ R R G R SR R S P P G S
Sbjct: 615 PPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKRSGDGSEKAPAPAPPPSGSTS 674
Query: 114 -GPQGGRARGAMA---------HVGSRKRSRSRSR---SRGRGSEKRKKKSRKDTSRNCS 160
G + R RGA+ + + KR+ + R S RG S K S
Sbjct: 675 CGDRDSRRRGAVPPSIQDLTDHDLFAIKRTITVGRLDKSDPRGPSPAPASSPKREVLYDS 734
Query: 161 ASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKK 220
S E K+ ++ R S ++SSSSSS S + D + R + +D+ R KK
Sbjct: 735 EGLSGEERGGKSSQKDRRRSGAASSSSSSREKGSRRKALDGGDRDRDRDRDRDRDRSSKK 794
Query: 221 KR 222
R
Sbjct: 795 AR 796
Score = 35.0 bits (79), Expect = 0.096
Identities = 49/233 (21%), Positives = 86/233 (36%), Gaps = 24/233 (10%)
Query: 50 GCGARGPAPLLASAGGGRARDGTWGVRTKGSGAALPSR--PASRAAPRPEASSPPLPLEK 107
G + PA ASAG G R S P P A P ++ P K
Sbjct: 844 GVSSTTPAKDAASAGLGSIGVKFSRDRESRSPFLKPDERAPTEMAKAAPGSTKPKKTKVK 903
Query: 108 ARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQER 167
A+ G +G +G +RK+ RS S G G + KKS+ D+ + + E
Sbjct: 904 AKAGAKKTKG--TKGKTKPSKTRKKVRSGGGSGGSGGQVSLKKSKADSCSQAAGTKGAEE 961
Query: 168 SKQKARRRTRSSSS----------------SSSSSSSSSSSSSSSSSSSSSDGRKKRGKY 211
+ R S S + SS + S +++ RG
Sbjct: 962 TSWSGEERAAKVPSTPPPKAAPPPPALTPDSQTVDSSCKTPEVSFLPEEATEEAGVRGGA 1021
Query: 212 KDKRRKKKKKRKKLKKKGKEKA--EAQQVEALPGPSLDQWHRSAGEE--EDGP 260
+++ +++++ ++ +++ ++ A A A + +AG+ EDGP
Sbjct: 1022 EEEEEEEEEEEEEEEEEEQQPATTTATSTAAAAPSTAPSAGSTAGDSGAEDGP 1074
Score = 33.1 bits (74), Expect = 0.36
Identities = 46/207 (22%), Positives = 72/207 (34%), Gaps = 52/207 (25%)
Query: 81 GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR 140
G + SR + R ++SPP + G+ R +KRSRSR R
Sbjct: 595 GGSRRSRSREKRRRRRRSASPPPATSSSSSSRRERHRGKHRDGGGSKKKKKRSRSRGEKR 654
Query: 141 -GRGSEKRKKKSRKDT-SRNCSASTSQER---------------------------SKQK 171
G GSEK + + S +C S+ R K
Sbjct: 655 SGDGSEKAPAPAPPPSGSTSCGDRDSRRRGAVPPSIQDLTDHDLFAIKRTITVGRLDKSD 714
Query: 172 ARRRTRSSSSS--------------------SSSSSSSSSSSSSSSSSSSSDGRKKR--- 208
R + + +SS SS S ++SSSSSS G +++
Sbjct: 715 PRGPSPAPASSPKREVLYDSEGLSGEERGGKSSQKDRRRSGAASSSSSSREKGSRRKALD 774
Query: 209 GKYKDKRRKKKKKRKKLKKKGKEKAEA 235
G +D+ R + + R + KK + E+
Sbjct: 775 GGDRDRDRDRDRDRDRSSKKARPPKES 801
>gi|4759100 splicing factor, arginine/serine-rich 11 [Homo sapiens]
Length = 484
Score = 72.8 bits (177), Expect = 4e-13
Identities = 61/234 (26%), Positives = 101/234 (43%), Gaps = 18/234 (7%)
Query: 88 PASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKR 147
P+S R + S K+R R R G R RS S++R + + +K
Sbjct: 261 PSSSRHRRSRSRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKK-EDKE 319
Query: 148 KKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKK 207
KK+S+ +A S+ S+++ RRR+RS + S S S S S KK
Sbjct: 320 KKRSKTPPKSYSTARRSRSASRERRRRRSRSGTRSPKKPRSPKRKLSRSPSPRRHKKEKK 379
Query: 208 RGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQK 267
+ K K++ R ++++ KKK K+K + ++ ++ + Q R EEE G D +K
Sbjct: 380 KDKDKERSRDERERSTSKKKKSKDKEKDRERKSESDKDVKQVTRDYDEEEQG---YDSEK 436
Query: 268 SRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEI-VTKERHRE 320
+ + KP+ + P+T + KG G+ L E V + H E
Sbjct: 437 EKKEEKKPI-------------ETGSPKTKECSVEKGTGDSLRESKVNGDDHHE 477
Score = 43.9 bits (102), Expect = 2e-04
Identities = 33/101 (32%), Positives = 43/101 (42%), Gaps = 4/101 (3%)
Query: 131 KRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSS 190
KR R E KK+ ++ SR+ S S + RR+RS S S S S S
Sbjct: 224 KRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSRSRSRRRSHSKSRS 283
Query: 191 SSSSSS----SSSSSSDGRKKRGKYKDKRRKKKKKRKKLKK 227
S S S S GR+ R K + +KK+ K KK K
Sbjct: 284 RRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSK 324
Score = 35.0 bits (79), Expect = 0.096
Identities = 33/132 (25%), Positives = 58/132 (43%), Gaps = 11/132 (8%)
Query: 136 RSRSRGRGSEKRKKKSRKDTSRNCSA--STSQERSKQKARRRTRSSSSSSSSSSSSSSSS 193
+S + + E+ K+ R+ S +A +E ++ +R R+RS + SSS S
Sbjct: 211 KSDTSSKEIEEAMKRVREAQSLISAAIEPDKKEEKRRHSRSRSRSRRRRTPSSSRHRRSR 270
Query: 194 SSSSSSSSSDGRKKRGKYKDKRRKK------KKKRKKLKKKGKEKAEAQQVEALPGP--- 244
S S S S R +R +RR+ ++ R K + K+K + ++ + P
Sbjct: 271 SRSRRRSHSKSRSRRRSKSPRRRRSHSRERGRRSRSTSKTRDKKKEDKEKKRSKTPPKSY 330
Query: 245 SLDQWHRSAGEE 256
S + RSA E
Sbjct: 331 STARRSRSASRE 342
>gi|42560244 peptidylprolyl isomerase G [Homo sapiens]
Length = 754
Score = 72.0 bits (175), Expect = 7e-13
Identities = 42/96 (43%), Positives = 57/96 (59%), Gaps = 11/96 (11%)
Query: 158 NCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDG-----------RK 206
+C + + K++ ++R +SSSSSSSSSS S SSS S SSS SSD +K
Sbjct: 173 SCGELIPKSKVKKEEKKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSKKRKK 232
Query: 207 KRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALP 242
K K K +K+KKKRKK KK ++EA+ +EA P
Sbjct: 233 KHRKNSRKHKKEKKKRKKSKKSASSESEAENLEAQP 268
Score = 53.9 bits (128), Expect = 2e-07
Identities = 47/156 (30%), Positives = 73/156 (46%), Gaps = 18/156 (11%)
Query: 130 RKRSRSRSRSR----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKAR-RRTRSSSSSSS 184
R+R RSRSR R GR K +++ R+D SR+ SQ R+K K R + ++SS +
Sbjct: 599 RRRGRSRSRERRTPPGRSRSKDRRRRRRD-SRSSEREESQSRNKDKYRNQESKSSHRKEN 657
Query: 185 SSSSSSSSSSSSSSSSSSDGRKKR--------GKYKDKRRKKKKKRKKLKKKGKEKAEA- 235
S S S S +SS++ R+K+ K K + + K LK K EK +
Sbjct: 658 SESEKRMYSKSRDHNSSNNSREKKADRDQSPFSKIKQSSQDNELKSSMLKNKEDEKIRSS 717
Query: 236 --QQVEALPGPSLDQWH-RSAGEEEDGPVLTDEQKS 268
++ + G D H ++ + + TDE KS
Sbjct: 718 VEKENQKSKGQENDHVHEKNKKFDHESSPGTDEDKS 753
Score = 52.8 bits (125), Expect = 4e-07
Identities = 33/114 (28%), Positives = 47/114 (41%)
Query: 119 RARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRS 178
R+R V SR R RSRS+ + ++ R+ SR+ T RS+ K RRR R
Sbjct: 567 RSRDRSRRVRSRTHDRDRSRSKEYHRYREQEYRRRGRSRSRERRTPPGRSRSKDRRRRRR 626
Query: 179 SSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
S SS S S + + S +K +KR K + +EK
Sbjct: 627 DSRSSEREESQSRNKDKYRNQESKSSHRKENSESEKRMYSKSRDHNSSNNSREK 680
Score = 47.0 bits (110), Expect = 2e-05
Identities = 43/216 (19%), Positives = 83/216 (38%), Gaps = 10/216 (4%)
Query: 107 KARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQE 166
K+R + R + + KR RSRS+ R + K K+K ++ S S+E
Sbjct: 459 KSRSKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDSKGKDQERSRSKE 518
Query: 167 RSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLK 226
+SKQ S S+ S S + S S D K + Y + R++ + R + +
Sbjct: 519 KSKQ-----LESKSNEHDHSKSKEKDRRAQSRSRECDITKGKHSYNSRTRERSRSRDRSR 573
Query: 227 K-----KGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEW 281
+ ++++ +++ + RS E P K R + + E
Sbjct: 574 RVRSRTHDRDRSRSKEYHRYREQEYRRRGRSRSRERRTPPGRSRSKDRRRRRRDSRSSER 633
Query: 282 DARQSIIRKVVDPETGRTRLIKGDGEVLEEIVTKER 317
+ QS + + ++ K + E + + +K R
Sbjct: 634 EESQSRNKDKYRNQESKSSHRKENSESEKRMYSKSR 669
Score = 43.5 bits (101), Expect = 3e-04
Identities = 48/190 (25%), Positives = 77/190 (40%), Gaps = 21/190 (11%)
Query: 76 RTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRS 135
R++ + SR R R + E R G S + R + R+R R
Sbjct: 567 RSRDRSRRVRSRTHDRDRSRSKEYHRYREQEYRRRGRSRSRERRTPPGRSRSKDRRRRRR 626
Query: 136 RSRSRGRGSEKRKKKSR-KDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSS----- 189
SRS SE+ + +SR KD RN + +S + ++ +R S S +SS++S
Sbjct: 627 DSRS----SEREESQSRNKDKYRNQESKSSHRKENSESEKRMYSKSRDHNSSNNSREKKA 682
Query: 190 --SSSSSSSSSSSSSDGRKKRGKYKDKRRKKKK---KRKKLKKKGKEKAEAQQV------ 238
S S SS D K K+K +K + +++ K KG+E +
Sbjct: 683 DRDQSPFSKIKQSSQDNELKSSMLKNKEDEKIRSSVEKENQKSKGQENDHVHEKNKKFDH 742
Query: 239 EALPGPSLDQ 248
E+ PG D+
Sbjct: 743 ESSPGTDEDK 752
Score = 42.0 bits (97), Expect = 8e-04
Identities = 24/105 (22%), Positives = 46/105 (43%), Gaps = 7/105 (6%)
Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKAR-------RRTRSSSSS 182
+ + + R++S+ R K K KS++ S++ + RS+ K R + +S S
Sbjct: 449 KNKVKKRAKSKSRSKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDSKG 508
Query: 183 SSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKK 227
S S S S S++ + K KD+R + + + + K
Sbjct: 509 KDQERSRSKEKSKQLESKSNEHDHSKSKEKDRRAQSRSRECDITK 553
Score = 41.6 bits (96), Expect = 0.001
Identities = 30/111 (27%), Positives = 53/111 (47%), Gaps = 6/111 (5%)
Query: 132 RSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSS 191
+S S+ R R SEK K K R + S S+ +SK+K++ + R S + + S
Sbjct: 430 KSNSKERDIRRNSEKDDKYKNKVKKR--AKSKSRSKSKEKSKSKERDSKHNRNEEKRMRS 487
Query: 192 SSSSSSSSSSSDGRKK---RGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVE 239
S + + K+ +GK +++ R K+K K+L+ K E ++ E
Sbjct: 488 RSKGRDHENVKEKEKQSDSKGKDQERSRSKEKS-KQLESKSNEHDHSKSKE 537
Score = 39.3 bits (90), Expect = 0.005
Identities = 32/130 (24%), Positives = 57/130 (43%), Gaps = 5/130 (3%)
Query: 134 RSRSRSRGRGSEKRKK-KSRKDTSRNCSASTSQERS---KQKARRRTRSSS-SSSSSSSS 188
R+ S S R +EK KK K K S+ + E+ K K ++R +S S S S S
Sbjct: 410 RNVSESPNRKNEKEKKVKDHKSNSKERDIRRNSEKDDKYKNKVKKRAKSKSRSKSKEKSK 469
Query: 189 SSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQ 248
S S + + R + + K+K+K+ K K +E++ +++ ++
Sbjct: 470 SKERDSKHNRNEEKRMRSRSKGRDHENVKEKEKQSDSKGKDQERSRSKEKSKQLESKSNE 529
Query: 249 WHRSAGEEED 258
S +E+D
Sbjct: 530 HDHSKSKEKD 539
Score = 38.5 bits (88), Expect = 0.009
Identities = 37/161 (22%), Positives = 68/161 (42%), Gaps = 23/161 (14%)
Query: 130 RKRSRSRSRSRGRGSE---------KRKKKSRKDTSRNCSASTSQERSKQKARRRT---- 176
R SRSRSR R R SE +R ++ R + E ++ K +R+
Sbjct: 342 RTPSRSRSRDRFRRSETPPHWRQEMQRAQRMRVSSGERWIKGDKSELNEIKENQRSPVRV 401
Query: 177 --------RSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKK- 227
R+ S S + + S+S ++ + DK + K KKR K K
Sbjct: 402 KERKITDHRNVSESPNRKNEKEKKVKDHKSNSKERDIRRNSEKDDKYKNKVKKRAKSKSR 461
Query: 228 -KGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQK 267
K KEK+++++ ++ + ++ RS + D + +++K
Sbjct: 462 SKSKEKSKSKERDSKHNRNEEKRMRSRSKGRDHENVKEKEK 502
Score = 34.7 bits (78), Expect = 0.12
Identities = 43/249 (17%), Positives = 82/249 (32%), Gaps = 27/249 (10%)
Query: 75 VRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSR 134
VR G +P + + SS + S + + + + ++S+
Sbjct: 169 VRILSCGELIPKSKVKKEEKKRHKSSSSSSSSSSDSDSSSDSQSSSDSSDSESATEEKSK 228
Query: 135 SRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSS 194
R + + S K KK+ +K SAS+ E +A+ ++ +
Sbjct: 229 KRKKKHRKNSRKHKKEKKKRKKSKKSASSESEAENLEAQPQSTVRPEEIPPIPENRFLMR 288
Query: 195 SSSSSSSSDGRKKRGKYKDKR------RKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQ 248
S + RK R + +++ + +R+ L + K + + PS +
Sbjct: 289 KSPPKADEKERKNRERERERECNPPNSQPASYQRRLLVTRSGRKIKGRGPRRYRTPSRSR 348
Query: 249 WHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEV 308
R + P ++ R Q M+ + E W IKGD
Sbjct: 349 -SRDRFRRSETPPHWRQEMQRAQRMRVSSGERW--------------------IKGDKSE 387
Query: 309 LEEIVTKER 317
L EI +R
Sbjct: 388 LNEIKENQR 396
>gi|169166609 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 6 [Homo sapiens]
Length = 305
Score = 68.2 bits (165), Expect = 1e-11
Identities = 41/105 (39%), Positives = 58/105 (55%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
G+ K S + R R + ++R S ++R+ S+STS S + SSSSS+SS S
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
SSS+S SSSSSSSS + D RR+ + K K K+ KE+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 60.1 bits (144), Expect = 3e-09
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
S ++S+ RS+ +G E +K +D +R +++S S + T SS SS+S+ SS
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 189 SSSSSSSSSSSSSSDGRKKRGKYK--------DKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
S SSSSS+SS S S + +RR ++R + K K ++ E ++
Sbjct: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Query: 241 LPGPSLDQWH 250
P P + H
Sbjct: 155 SPSPKPTKVH 164
Score = 59.7 bits (143), Expect = 4e-09
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 74 GVRTKGS-GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
GV+ K G ++ +S AP P K R + +GA + R
Sbjct: 5 GVKKKSLLGVKENNKKSSTRAPSPTK-------RKDRSDEKSKDRSKDKGATKESSEKDR 57
Query: 133 SRSRSRSR-----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
R ++R R G S + + S + + S +S S A R+ SSS+S SSSS
Sbjct: 58 GRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
SSSS S S S + R+ R K K +R +K+++++
Sbjct: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 33.1 bits (74), Expect = 0.36
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
R RD T R+ SG+ S SR++ + S G + A +
Sbjct: 57 RGRDKTRKRRSASSGS---SSTRSRSSSTSSSGSST--------STGSSSGSSSSSASSR 105
Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRS 178
GS SRS S S GS ++ + R+ S S +R +++ +RR+ S
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
Score = 32.7 bits (73), Expect = 0.47
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|113415994 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 2 [Homo sapiens]
Length = 305
Score = 68.2 bits (165), Expect = 1e-11
Identities = 41/105 (39%), Positives = 58/105 (55%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
G+ K S + R R + ++R S ++R+ S+STS S + SSSSS+SS S
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
SSS+S SSSSSSSS + D RR+ + K K K+ KE+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 60.1 bits (144), Expect = 3e-09
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
S ++S+ RS+ +G E +K +D +R +++S S + T SS SS+S+ SS
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 189 SSSSSSSSSSSSSSDGRKKRGKYK--------DKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
S SSSSS+SS S S + +RR ++R + K K ++ E ++
Sbjct: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Query: 241 LPGPSLDQWH 250
P P + H
Sbjct: 155 SPSPKPTKVH 164
Score = 59.7 bits (143), Expect = 4e-09
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 74 GVRTKGS-GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
GV+ K G ++ +S AP P K R + +GA + R
Sbjct: 5 GVKKKSLLGVKENNKKSSTRAPSPTK-------RKDRSDEKSKDRSKDKGATKESSEKDR 57
Query: 133 SRSRSRSR-----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
R ++R R G S + + S + + S +S S A R+ SSS+S SSSS
Sbjct: 58 GRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
SSSS S S S + R+ R K K +R +K+++++
Sbjct: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 33.1 bits (74), Expect = 0.36
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
R RD T R+ SG+ S SR++ + S G + A +
Sbjct: 57 RGRDKTRKRRSASSGS---SSTRSRSSSTSSSGSST--------STGSSSGSSSSSASSR 105
Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRS 178
GS SRS S S GS ++ + R+ S S +R +++ +RR+ S
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
Score = 32.7 bits (73), Expect = 0.47
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|6857826 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 68.2 bits (165), Expect = 1e-11
Identities = 41/105 (39%), Positives = 58/105 (55%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
G+ K S + R R + ++R S ++R+ S+STS S + SSSSS+SS S
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
SSS+S SSSSSSSS + D RR+ + K K K+ KE+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 60.1 bits (144), Expect = 3e-09
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
S ++S+ RS+ +G E +K +D +R +++S S + T SS SS+S+ SS
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 189 SSSSSSSSSSSSSSDGRKKRGKYK--------DKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
S SSSSS+SS S S + +RR ++R + K K ++ E ++
Sbjct: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Query: 241 LPGPSLDQWH 250
P P + H
Sbjct: 155 SPSPKPTKVH 164
Score = 59.7 bits (143), Expect = 4e-09
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 74 GVRTKGS-GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
GV+ K G ++ +S AP P K R + +GA + R
Sbjct: 5 GVKKKSLLGVKENNKKSSTRAPSPTK-------RKDRSDEKSKDRSKDKGATKESSEKDR 57
Query: 133 SRSRSRSR-----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
R ++R R G S + + S + + S +S S A R+ SSS+S SSSS
Sbjct: 58 GRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
SSSS S S S + R+ R K K +R +K+++++
Sbjct: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 33.1 bits (74), Expect = 0.36
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
R RD T R+ SG+ S SR++ + S G + A +
Sbjct: 57 RGRDKTRKRRSASSGS---SSTRSRSSSTSSSGSST--------STGSSSGSSSSSASSR 105
Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRS 178
GS SRS S S GS ++ + R+ S S +R +++ +RR+ S
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
Score = 32.7 bits (73), Expect = 0.47
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|18379334 RNA-binding protein S1, serine-rich domain [Homo
sapiens]
Length = 305
Score = 68.2 bits (165), Expect = 1e-11
Identities = 41/105 (39%), Positives = 58/105 (55%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
G+ K S + R R + ++R S ++R+ S+STS S + SSSSS+SS S
Sbjct: 47 GATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
SSS+S SSSSSSSS + D RR+ + K K K+ KE+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 60.1 bits (144), Expect = 3e-09
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
S ++S+ RS+ +G E +K +D +R +++S S + T SS SS+S+ SS
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 189 SSSSSSSSSSSSSSDGRKKRGKYK--------DKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
S SSSSS+SS S S + +RR ++R + K K ++ E ++
Sbjct: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Query: 241 LPGPSLDQWH 250
P P + H
Sbjct: 155 SPSPKPTKVH 164
Score = 59.7 bits (143), Expect = 4e-09
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 74 GVRTKGS-GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
GV+ K G ++ +S AP P K R + +GA + R
Sbjct: 5 GVKKKSLLGVKENNKKSSTRAPSPTK-------RKDRSDEKSKDRSKDKGATKESSEKDR 57
Query: 133 SRSRSRSR-----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
R ++R R G S + + S + + S +S S A R+ SSS+S SSSS
Sbjct: 58 GRDKTRKRRSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
SSSS S S S + R+ R K K +R +K+++++
Sbjct: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 33.1 bits (74), Expect = 0.36
Identities = 29/112 (25%), Positives = 46/112 (41%), Gaps = 11/112 (9%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
R RD T R+ SG+ S SR++ + S G + A +
Sbjct: 57 RGRDKTRKRRSASSGS---SSTRSRSSSTSSSGSST--------STGSSSGSSSSSASSR 105
Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRS 178
GS SRS S S GS ++ + R+ S S +R +++ +RR+ S
Sbjct: 106 SGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRRSPS 157
Score = 32.7 bits (73), Expect = 0.47
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|113415504 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 66.2 bits (160), Expect = 4e-11
Identities = 40/105 (38%), Positives = 57/105 (54%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
G+ K S + R R + ++ S ++R+ S+STS S + SSSSS+SS S
Sbjct: 47 GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
SSS+S SSSSSSSS + D RR+ + K K K+ KE+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 60.1 bits (144), Expect = 3e-09
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
S ++S+ RS+ +G E +K +D +R +++S S + T SS SS+S+ SS
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 189 SSSSSSSSSSSSSSDGRKKRGKYK--------DKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
S SSSSS+SS S S + +RR ++R + K K ++ E ++
Sbjct: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Query: 241 LPGPSLDQWH 250
P P + H
Sbjct: 155 SPSPKPTKVH 164
Score = 59.7 bits (143), Expect = 4e-09
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 74 GVRTKGS-GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
GV+ K G ++ +S AP P K R + +GA + R
Sbjct: 5 GVKKKSLLGVKENNKKSSTRAPSPTK-------RKDRSDEKSKDRSKDKGATKESSEKDR 57
Query: 133 SRSRSRSR-----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
R ++R R G S + + S + + S +S S A R+ SSS+S SSSS
Sbjct: 58 GRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
SSSS S S S + R+ R K K +R +K+++++
Sbjct: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 32.7 bits (73), Expect = 0.47
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|169166499 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 66.2 bits (160), Expect = 4e-11
Identities = 40/105 (38%), Positives = 57/105 (54%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
G+ K S + R R + ++ S ++R+ S+STS S + SSSSS+SS S
Sbjct: 47 GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
SSS+S SSSSSSSS + D RR+ + K K K+ KE+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 60.1 bits (144), Expect = 3e-09
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
S ++S+ RS+ +G E +K +D +R +++S S + T SS SS+S+ SS
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 189 SSSSSSSSSSSSSSDGRKKRGKYK--------DKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
S SSSSS+SS S S + +RR ++R + K K ++ E ++
Sbjct: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Query: 241 LPGPSLDQWH 250
P P + H
Sbjct: 155 SPSPKPTKVH 164
Score = 59.7 bits (143), Expect = 4e-09
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 74 GVRTKGS-GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
GV+ K G ++ +S AP P K R + +GA + R
Sbjct: 5 GVKKKSLLGVKENNKKSSTRAPSPTK-------RKDRSDEKSKDRSKDKGATKESSEKDR 57
Query: 133 SRSRSRSR-----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
R ++R R G S + + S + + S +S S A R+ SSS+S SSSS
Sbjct: 58 GRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
SSSS S S S + R+ R K K +R +K+++++
Sbjct: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 32.7 bits (73), Expect = 0.47
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|113415498 PREDICTED: similar to ribonucleic acid binding protein
S1 [Homo sapiens]
Length = 305
Score = 66.2 bits (160), Expect = 4e-11
Identities = 40/105 (38%), Positives = 57/105 (54%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
G+ K S + R R + ++ S ++R+ S+STS S + SSSSS+SS S
Sbjct: 47 GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
SSS+S SSSSSSSS + D RR+ + K K K+ KE+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 60.1 bits (144), Expect = 3e-09
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
S ++S+ RS+ +G E +K +D +R +++S S + T SS SS+S+ SS
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 189 SSSSSSSSSSSSSSDGRKKRGKYK--------DKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
S SSSSS+SS S S + +RR ++R + K K ++ E ++
Sbjct: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Query: 241 LPGPSLDQWH 250
P P + H
Sbjct: 155 SPSPKPTKVH 164
Score = 59.7 bits (143), Expect = 4e-09
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 74 GVRTKGS-GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
GV+ K G ++ +S AP P K R + +GA + R
Sbjct: 5 GVKKKSLLGVKENNKKSSTRAPSPTK-------RKDRSDEKSKDRSKDKGATKESSEKDR 57
Query: 133 SRSRSRSR-----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
R ++R R G S + + S + + S +S S A R+ SSS+S SSSS
Sbjct: 58 GRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
SSSS S S S + R+ R K K +R +K+++++
Sbjct: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 32.7 bits (73), Expect = 0.47
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|88973230 PREDICTED: similar to ribonucleic acid binding protein
S1 isoform 3 [Homo sapiens]
Length = 305
Score = 66.2 bits (160), Expect = 4e-11
Identities = 40/105 (38%), Positives = 57/105 (54%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
G+ K S + R R + ++ S ++R+ S+STS S + SSSSS+SS S
Sbjct: 47 GATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRS 106
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
SSS+S SSSSSSSS + D RR+ + K K K+ KE+
Sbjct: 107 GSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKER 151
Score = 60.1 bits (144), Expect = 3e-09
Identities = 38/130 (29%), Positives = 63/130 (48%), Gaps = 8/130 (6%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
S ++S+ RS+ +G E +K +D +R +++S S + T SS SS+S+ SS
Sbjct: 35 SDEKSKDRSKDKGATKESSEKDRGRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSS 94
Query: 189 SSSSSSSSSSSSSSDGRKKRGKYK--------DKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
S SSSSS+SS S S + +RR ++R + K K ++ E ++
Sbjct: 95 SGSSSSSASSRSGSSSTSRSSSSSSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Query: 241 LPGPSLDQWH 250
P P + H
Sbjct: 155 SPSPKPTKVH 164
Score = 59.7 bits (143), Expect = 4e-09
Identities = 45/157 (28%), Positives = 70/157 (44%), Gaps = 13/157 (8%)
Query: 74 GVRTKGS-GAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKR 132
GV+ K G ++ +S AP P K R + +GA + R
Sbjct: 5 GVKKKSLLGVKENNKKSSTRAPSPTK-------RKDRSDEKSKDRSKDKGATKESSEKDR 57
Query: 133 SRSRSRSR-----GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
R ++R R G S + + S + + S +S S A R+ SSS+S SSSS
Sbjct: 58 GRDKTRKRHSASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSSSASSRSGSSSTSRSSSS 117
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
SSSS S S S + R+ R K K +R +K+++++
Sbjct: 118 SSSSGSPSPSRRRHDNRRRSRSKSKPPKRDEKERKRR 154
Score = 32.7 bits (73), Expect = 0.47
Identities = 24/91 (26%), Positives = 40/91 (43%), Gaps = 3/91 (3%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
AS+G R + + GS + S S ++ ASS +R S G
Sbjct: 68 ASSGSSSTRSRSSSTSSSGSSTSTGSSSGSSSS---SASSRSGSSSTSRSSSSSSSSGSP 124
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKS 151
+ +R+RSRS+S+ R ++RK++S
Sbjct: 125 SPSRRRHDNRRRSRSKSKPPKRDEKERKRRS 155
>gi|40807452 peroxisome proliferator-activated receptor gamma,
coactivator-related 1 [Homo sapiens]
Length = 1664
Score = 65.5 bits (158), Expect = 7e-11
Identities = 60/175 (34%), Positives = 84/175 (48%), Gaps = 18/175 (10%)
Query: 80 SGAALPSRP--ASRAAPRPEAS---------SPPLPLEKARGGLSGPQGGRARGAMAHVG 128
S A PS P A + PEAS +PP P K R + R+ +
Sbjct: 1360 SEQADPSAPCLAPSSLLSPEASPCRNDMNTRTPPEPSAKQRSMRCYRKACRSASPSSQGW 1419
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSS--- 185
+R R+ SRS GS + + S +S + S+S S+ RS +R R SS SSS
Sbjct: 1420 QGRRGRN-SRSVSSGSNRTSEASSSSSSSS-SSSRSRSRSLSPPHKRWRRSSCSSSGRSR 1477
Query: 186 --SSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQV 238
SSSSSSSSSSSSSSSSS + R + RR+ ++R+ + + + Q+V
Sbjct: 1478 RCSSSSSSSSSSSSSSSSSSSSRSRSRSPSPRRRSDRRRRYSSYRSHDHYQRQRV 1532
Score = 54.7 bits (130), Expect = 1e-07
Identities = 50/164 (30%), Positives = 74/164 (45%), Gaps = 10/164 (6%)
Query: 90 SRAAPRPEASSPPL-----PLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGS 144
+R P P A + A G QG R R + + R+ S S S
Sbjct: 1389 TRTPPEPSAKQRSMRCYRKACRSASPSSQGWQGRRGRNSRSVSSGSNRTSEASSSSSSSS 1448
Query: 145 EKRKKKSRKDTSRNCSASTSQERSKQKARR-RTRSSSSSSSSSSSSSSSSSSSSSSSSSD 203
+ +SR + + S S ++RR + SSSSSSSSSSSSSSSSS S S S S
Sbjct: 1449 SSSRSRSRSLSPPHKRWRRSSCSSSGRSRRCSSSSSSSSSSSSSSSSSSSSRSRSRSPSP 1508
Query: 204 GRK--KRGKYKDKRRKKKKKRKKL--KKKGKEKAEAQQVEALPG 243
R+ +R +Y R +R+++ K++ E+ + +PG
Sbjct: 1509 RRRSDRRRRYSSYRSHDHYQRQRVLQKERAIEERRVVFIGKIPG 1552
Score = 28.5 bits (62), Expect = 8.9
Identities = 25/116 (21%), Positives = 51/116 (43%), Gaps = 4/116 (3%)
Query: 150 KSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRG 209
K ++ N + + + R +K + + + ++ + SSS S+ + +
Sbjct: 440 KEPQNPPANAAPGSQRARKGRKKKSKEQPAACVEGYARRLRSSSRGQSTVGTEVTSQVDN 499
Query: 210 KYKDKRRKKKKKRKKLKKKGKEKAEAQQ-VEALPGPSLDQWHRSAGEE---EDGPV 261
K + + +K+ L+ KGK +A A+ AL S RSAG+ ++GP+
Sbjct: 500 LQKQPQEELQKESGPLQGKGKPRAWARAWAAALENSSPKNLERSAGQSSPAKEGPL 555
>gi|21361282 splicing factor, arginine/serine-rich 4 [Homo sapiens]
Length = 494
Score = 65.1 bits (157), Expect = 9e-11
Identities = 57/187 (30%), Positives = 79/187 (42%), Gaps = 26/187 (13%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNC---SASTSQERSKQKARRRTRSSSSSSSS 185
S RSRS SRSR R RK +SR +S++ S S S+ S+ +++ R+RS S S S
Sbjct: 184 SYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSK 243
Query: 186 SSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRK---------KKKKRKKLKKKGKEKAEAQ 236
S S S S S S K R K KD+ + K K R + K K K+ ++
Sbjct: 244 KEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSR 303
Query: 237 QVEALPGPSLDQWHRSAGEEEDGPV---LTDEQKSRIQAMKPMTKEEWDARQSIIRKVVD 293
E R EE+ G V + E+ R + +K +R K D
Sbjct: 304 SQE-----------RRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKD 352
Query: 294 PETGRTR 300
GR R
Sbjct: 353 KRKGRKR 359
Score = 59.7 bits (143), Expect = 4e-09
Identities = 46/188 (24%), Positives = 78/188 (41%), Gaps = 1/188 (0%)
Query: 120 ARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSS 179
+R + + GS K S S+SRSR R + + KSR + + + RS K + R+RS
Sbjct: 201 SRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRSRSQSRSRSKKEKSRSPSKEKSRSRSH 260
Query: 180 SSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVE 239
S+ S S S + ++ + K R + K + K + R + ++ +EK +
Sbjct: 261 SAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKSRSRSQERRVEEEKRGSVSRG 320
Query: 240 ALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRT 299
SL Q RS + G +S+ + + K + +S R E R
Sbjct: 321 RSQEKSLRQ-SRSRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRK 379
Query: 300 RLIKGDGE 307
R K D +
Sbjct: 380 RGSKRDSK 387
Score = 59.7 bits (143), Expect = 4e-09
Identities = 41/165 (24%), Positives = 70/165 (42%), Gaps = 5/165 (3%)
Query: 86 SRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSE 145
SR S+ R + S +K +G + R+R R R R R GS
Sbjct: 332 SRSRSKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSS 391
Query: 146 KRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGR 205
K+KKK +DT R+ S S S+ SK++ ++ SS S ++ ++ + S S S+ +
Sbjct: 392 KKKKK--EDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQETRSRSRSNSK 449
Query: 206 KKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 250
K + R + K K + + K+ ++ P S + H
Sbjct: 450 SKPNLPSESRSRSKSAS---KTRSRSKSRSRSASRSPSRSRSRSH 491
Score = 59.3 bits (142), Expect = 5e-09
Identities = 55/214 (25%), Positives = 90/214 (42%), Gaps = 17/214 (7%)
Query: 95 RPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKD 154
+P++ SP K++ S + R GS R RS+ +S + R + K
Sbjct: 285 KPKSRSPSRHKSKSK---SRSRSQERRVEEEKRGSVSRGRSQEKSL---RQSRSRSRSKG 338
Query: 155 TSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSS---SSSSSSSSSDGRKKRGKY 211
SR+ S S S+ + K+K R+R+R S S S S S S S S S + +KK+ +
Sbjct: 339 GSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSERSRKRGSKRDSKAGSSKKKKKED 398
Query: 212 KDKRRKKKKKRKKLKKKGKEKAEAQQVEAL-----PGPSLDQWHRSAGEEEDGPVLTDEQ 266
D+ + + R K++ K+E+ Q E G + + RS + P L E
Sbjct: 399 TDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQETRSRSRSNSKSKPNLPSES 458
Query: 267 KSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR 300
+SR ++ +S R P R+R
Sbjct: 459 RSRSKSASKTRSRSKSRSRSASR---SPSRSRSR 489
Score = 57.0 bits (136), Expect = 2e-08
Identities = 57/233 (24%), Positives = 89/233 (38%), Gaps = 52/233 (22%)
Query: 90 SRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKK 149
SR+ R + S ++R G S ++R SR RS SRSRS+ R + +
Sbjct: 188 SRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSR-------SRSRSGSRSRSKSRSRSQSRS 240
Query: 150 KSRKDTSRNCSASTSQERS-------------------------KQKARRRTRSSSSSSS 184
+S+K+ SR+ S S+ RS K K+R +R S S S
Sbjct: 241 RSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAEEKIQNNDNVGKPKSRSPSRHKSKSKS 300
Query: 185 SSSSSSSSSSSSSSSSSSDGR-----------KKRGKYKDKRRKKKKKRKKLKKKGKEKA 233
S S S S GR + R K + R + + + K K+KG++++
Sbjct: 301 RSRSQERRVEEEKRGSVSRGRSQEKSLRQSRSRSRSKGGSRSRSRSRSKSKDKRKGRKRS 360
Query: 234 EAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQS 286
+ S + R G + D S+ + K KE+ D QS
Sbjct: 361 REESRSRSRSRSKSERSRKRGSKRD---------SKAGSSKKKKKEDTDRSQS 404
Score = 53.9 bits (128), Expect = 2e-07
Identities = 36/100 (36%), Positives = 49/100 (49%), Gaps = 10/100 (10%)
Query: 145 EKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDG 204
+K + R+ SR+ S S S+ RS+ + R+RS SS SS S S S S S S S S S
Sbjct: 175 DKPGSRRRRSYSRSRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRS 234
Query: 205 R----------KKRGKYKDKRRKKKKKRKKLKKKGKEKAE 234
R K R K+K R + K + K K++AE
Sbjct: 235 RSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSKDQAE 274
Score = 53.5 bits (127), Expect = 3e-07
Identities = 36/96 (37%), Positives = 52/96 (54%), Gaps = 5/96 (5%)
Query: 143 GSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSS--SSSSSSSSSSSSSSSSSS 200
GS +R+ SR SR+ S S S+ R +K+R R+ SS SS S S S S S S S S S
Sbjct: 178 GSRRRRSYSR---SRSHSRSRSRSRHSRKSRSRSGSSKSSHSKSRSRSRSGSRSRSKSRS 234
Query: 201 SSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQ 236
S R + K K + K+K R + GK +++++
Sbjct: 235 RSQSRSRSKKEKSRSPSKEKSRSRSHSAGKSRSKSK 270
Score = 47.4 bits (111), Expect = 2e-05
Identities = 43/160 (26%), Positives = 67/160 (41%), Gaps = 8/160 (5%)
Query: 62 SAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRAR 121
S GG R+R + SR SR+ R + S + RG + G ++
Sbjct: 336 SKGGSRSRSRSRSKSKDKRKGRKRSREESRSRSRSRSKSER---SRKRGSKRDSKAGSSK 392
Query: 122 GAMAHVGSRKRSRSRSRSRGRGSEKRKKKS--RKDTSRNCSASTSQERSKQKARRRTRSS 179
R +SRS SRS + E K +S R+ + +A T+QE ++R R+ S
Sbjct: 393 KKKKEDTDRSQSRSPSRSVSKEREHAKSESSQREGRGESENAGTNQE---TRSRSRSNSK 449
Query: 180 SSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKK 219
S + S S S S S+S + S S R + R + +
Sbjct: 450 SKPNLPSESRSRSKSASKTRSRSKSRSRSASRSPSRSRSR 489
Score = 45.1 bits (105), Expect = 9e-05
Identities = 40/141 (28%), Positives = 59/141 (41%), Gaps = 20/141 (14%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRA------APRPEASSPPLPLEKARGGLSGPQGGR- 119
R+R + R++ G+ S+ S R ++ SP + K R R
Sbjct: 367 RSRSRSKSERSRKRGSKRDSKAGSSKKKKKEDTDRSQSRSPSRSVSKEREHAKSESSQRE 426
Query: 120 ARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSS 179
RG + G+ + +RSRSRS + +SR RSK ++ R+RS
Sbjct: 427 GRGESENAGTNQETRSRSRSNSKSKPNLPSESRS-------------RSKSASKTRSRSK 473
Query: 180 SSSSSSSSSSSSSSSSSSSSS 200
S S S+S S S S S S S S
Sbjct: 474 SRSRSASRSPSRSRSRSHSRS 494
>gi|116089325 splicing factor, arginine/serine-rich 12 isoform a
[Homo sapiens]
Length = 624
Score = 65.1 bits (157), Expect = 9e-11
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 105 LEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTS 164
+E G + +GGR+R S RS+SRS S+ KR + + S N S S
Sbjct: 293 IEPESGKSNERKGGRSR-------SHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQ 345
Query: 165 QERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKD--KRRKKKKKR 222
++R + K+ + RS S S S S S + K+R K KD K R+++K+R
Sbjct: 346 KDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKER 405
Query: 223 KKLKKKGKEKAEAQQVE 239
+K K++GK K ++ E
Sbjct: 406 EKEKERGKNKDRDKERE 422
Score = 50.1 bits (118), Expect = 3e-06
Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 8/216 (3%)
Query: 65 GGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAM 124
GGR+R T +++ S + R S++ R + + +K R P R++
Sbjct: 305 GGRSRSHTRS-KSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRE 363
Query: 125 AHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSS 184
SR RS SR + + + ++K+ K+ R +ER K+K R + +
Sbjct: 364 RRK-SRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNK-DRDKER 421
Query: 185 SSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG-KEKAEAQQVEALPG 243
+ K R K K+K + K+K+R+K + K EK + + P
Sbjct: 422 EKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPP 481
Query: 244 PSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKE 279
S + RS + ++SR + P T +
Sbjct: 482 RSYNASRRSRSSSRE----RRRRRSRSSSRSPRTSK 513
Score = 49.7 bits (117), Expect = 4e-06
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 11/151 (7%)
Query: 132 RSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSS 191
+ + R + R + ++++KK +K + S + S+ RR R S SSS S +S +
Sbjct: 455 KEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKT 514
Query: 192 SSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKK-----------GKEKAEAQQVEA 240
SS S S R K+ K ++K R +R++ ++ GKEK E
Sbjct: 515 IKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSL 574
Query: 241 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQ 271
+ S +E D ++++IQ
Sbjct: 575 KEKEHNKEPDSSVSKEVDDKDAPRTEENKIQ 605
Score = 46.6 bits (109), Expect = 3e-05
Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 23/179 (12%)
Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSS 189
R+R + + R + EK + K K+ ++ S ++R K K R S ++S S SS
Sbjct: 435 REREKEHEKDRDKEKEKEQDK-EKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSS 493
Query: 190 S---------SSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
S SSS S +S + + R R KK KKR+K + E+ E ++ +
Sbjct: 494 SRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTS 553
Query: 241 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRT 299
+ R + + DG ++ + ++ K KE S+ ++V D + RT
Sbjct: 554 M---------RKSSNDRDGKEKLEKNSTSLKE-KEHNKE---PDSSVSKEVDDKDAPRT 599
Score = 45.8 bits (107), Expect = 5e-05
Identities = 24/91 (26%), Positives = 44/91 (48%)
Query: 146 KRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGR 205
KR ++++ S + + ++ R R+ + S S SSS S S S S S
Sbjct: 280 KRVREAQSFISAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHN 339
Query: 206 KKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQ 236
+ R + KD+RR K +K+ K + + K+ ++
Sbjct: 340 RSRSRQKDRRRSKSPHKKRSKSRERRKSRSR 370
Score = 42.7 bits (99), Expect = 5e-04
Identities = 38/199 (19%), Positives = 80/199 (40%), Gaps = 25/199 (12%)
Query: 130 RKRSRSRSRSRGRGSEKRKKKSR-----KDTSRNCSASTSQERSKQKARRRTRSSSSSSS 184
R +++ R + R + EK K+K R K+ ++ +E+ K+K R + RS
Sbjct: 411 RGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEK 470
Query: 185 SSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGP 244
S + S ++S +R + + R++++ R + K ++ P P
Sbjct: 471 RKKDKKSRTPPRSYNAS-----RRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSP 525
Query: 245 SLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKG 304
RS +++ K R + +++ R + +RK + G+ +L K
Sbjct: 526 ------RSRNKKD---------KKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKN 570
Query: 305 DGEVLEEIVTKERHREINK 323
+ E+ KE ++K
Sbjct: 571 STSLKEKEHNKEPDSSVSK 589
Score = 40.0 bits (92), Expect = 0.003
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 129 SRKRSRSRSRSRGRG---SEKRKKKSRKDTSRNCSASTSQERSKQK---ARRRTRSSSSS 182
SR+R R RSRS R S+ K+KS + S ++R K++ + RR R S+S
Sbjct: 494 SRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTS 553
Query: 183 SSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAE 234
SS+ +S+S K+ K D K+ K + + K +
Sbjct: 554 MRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKDAPRTEENKIQ 605
>gi|21040255 splicing factor, arginine/serine-rich 12 isoform b
[Homo sapiens]
Length = 508
Score = 65.1 bits (157), Expect = 9e-11
Identities = 43/137 (31%), Positives = 67/137 (48%), Gaps = 9/137 (6%)
Query: 105 LEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTS 164
+E G + +GGR+R S RS+SRS S+ KR + + S N S S
Sbjct: 177 IEPESGKSNERKGGRSR-------SHTRSKSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQ 229
Query: 165 QERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKD--KRRKKKKKR 222
++R + K+ + RS S S S S S + K+R K KD K R+++K+R
Sbjct: 230 KDRRRSKSPHKKRSKSRERRKSRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKER 289
Query: 223 KKLKKKGKEKAEAQQVE 239
+K K++GK K ++ E
Sbjct: 290 EKEKERGKNKDRDKERE 306
Score = 50.1 bits (118), Expect = 3e-06
Identities = 47/216 (21%), Positives = 85/216 (39%), Gaps = 8/216 (3%)
Query: 65 GGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAM 124
GGR+R T +++ S + R S++ R + + +K R P R++
Sbjct: 189 GGRSRSHTRS-KSRSSSKSHSRRKRSQSKHRSRSHNRSRSRQKDRRRSKSPHKKRSKSRE 247
Query: 125 AHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSS 184
SR RS SR + + + ++K+ K+ R +ER K+K R + +
Sbjct: 248 RRK-SRSRSHSRDKRKDTREKIKEKERVKEKDREKEREREKEREKEKERGKNK-DRDKER 305
Query: 185 SSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKG-KEKAEAQQVEALPG 243
+ K R K K+K + K+K+R+K + K EK + + P
Sbjct: 306 EKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEKRKKDKKSRTPP 365
Query: 244 PSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKE 279
S + RS + ++SR + P T +
Sbjct: 366 RSYNASRRSRSSSRE----RRRRRSRSSSRSPRTSK 397
Score = 49.7 bits (117), Expect = 4e-06
Identities = 36/151 (23%), Positives = 64/151 (42%), Gaps = 11/151 (7%)
Query: 132 RSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSS 191
+ + R + R + ++++KK +K + S + S+ RR R S SSS S +S +
Sbjct: 339 KEKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSSSRERRRRRSRSSSRSPRTSKT 398
Query: 192 SSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKK-----------GKEKAEAQQVEA 240
SS S S R K+ K ++K R +R++ ++ GKEK E
Sbjct: 399 IKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKNSTSL 458
Query: 241 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQ 271
+ S +E D ++++IQ
Sbjct: 459 KEKEHNKEPDSSVSKEVDDKDAPRTEENKIQ 489
Score = 46.6 bits (109), Expect = 3e-05
Identities = 44/179 (24%), Positives = 77/179 (43%), Gaps = 23/179 (12%)
Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSS 189
R+R + + R + EK + K K+ ++ S ++R K K R S ++S S SS
Sbjct: 319 REREKEHEKDRDKEKEKEQDK-EKEREKDRSKEIDEKRKKDKKSRTPPRSYNASRRSRSS 377
Query: 190 S---------SSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEA 240
S SSS S +S + + R R KK KKR+K + E+ E ++ +
Sbjct: 378 SRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTS 437
Query: 241 LPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRT 299
+ R + + DG ++ + ++ K KE S+ ++V D + RT
Sbjct: 438 M---------RKSSNDRDGKEKLEKNSTSLKE-KEHNKE---PDSSVSKEVDDKDAPRT 483
Score = 45.8 bits (107), Expect = 5e-05
Identities = 24/91 (26%), Positives = 44/91 (48%)
Query: 146 KRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGR 205
KR ++++ S + + ++ R R+ + S S SSS S S S S S
Sbjct: 164 KRVREAQSFISAAIEPESGKSNERKGGRSRSHTRSKSRSSSKSHSRRKRSQSKHRSRSHN 223
Query: 206 KKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQ 236
+ R + KD+RR K +K+ K + + K+ ++
Sbjct: 224 RSRSRQKDRRRSKSPHKKRSKSRERRKSRSR 254
Score = 42.7 bits (99), Expect = 5e-04
Identities = 38/199 (19%), Positives = 80/199 (40%), Gaps = 25/199 (12%)
Query: 130 RKRSRSRSRSRGRGSEKRKKKSR-----KDTSRNCSASTSQERSKQKARRRTRSSSSSSS 184
R +++ R + R + EK K+K R K+ ++ +E+ K+K R + RS
Sbjct: 295 RGKNKDRDKEREKDREKDKEKDREREREKEHEKDRDKEKEKEQDKEKEREKDRSKEIDEK 354
Query: 185 SSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGP 244
S + S ++S +R + + R++++ R + K ++ P P
Sbjct: 355 RKKDKKSRTPPRSYNAS-----RRSRSSSRERRRRRSRSSSRSPRTSKTIKRKSSRSPSP 409
Query: 245 SLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKG 304
RS +++ K R + +++ R + +RK + G+ +L K
Sbjct: 410 ------RSRNKKD---------KKREKERDHISERRERERSTSMRKSSNDRDGKEKLEKN 454
Query: 305 DGEVLEEIVTKERHREINK 323
+ E+ KE ++K
Sbjct: 455 STSLKEKEHNKEPDSSVSK 473
Score = 40.0 bits (92), Expect = 0.003
Identities = 31/112 (27%), Positives = 49/112 (43%), Gaps = 6/112 (5%)
Query: 129 SRKRSRSRSRSRGRG---SEKRKKKSRKDTSRNCSASTSQERSKQK---ARRRTRSSSSS 182
SR+R R RSRS R S+ K+KS + S ++R K++ + RR R S+S
Sbjct: 378 SRERRRRRSRSSSRSPRTSKTIKRKSSRSPSPRSRNKKDKKREKERDHISERRERERSTS 437
Query: 183 SSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAE 234
SS+ +S+S K+ K D K+ K + + K +
Sbjct: 438 MRKSSNDRDGKEKLEKNSTSLKEKEHNKEPDSSVSKEVDDKDAPRTEENKIQ 489
>gi|118572613 splicing coactivator subunit SRm300 [Homo sapiens]
Length = 2752
Score = 63.5 bits (153), Expect = 3e-10
Identities = 67/215 (31%), Positives = 91/215 (42%), Gaps = 17/215 (7%)
Query: 2 ERA-GPAGEEGGAREGRLLPRA---PGAWVLRACAERAALEVGAASADTGVRGCGARGPA 57
ERA P+ G A LLP A P + V A ++++ + + G + + A
Sbjct: 2422 ERAPSPSSRMGQAPSQSLLPPAQDQPRSPVPSAFSDQSRCLIAQTTPVAGSQSLSSGAVA 2481
Query: 58 PLLASAGGGRARDGTWGVRTKG-SGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQ 116
+SAG +G V G + + PAS A +P A + P ++ R S
Sbjct: 2482 TTTSSAGD---HNGMLSVPAPGVPHSDVGEPPASTGAQQPSALAALQPAKERRSSSSSSS 2538
Query: 117 GGRARGAMAHVGSRKRSRSRSRSRGRGSE---------KRKKKSRKDTSRNCSASTSQER 167
+ + + S S S S GS KR E
Sbjct: 2539 SSSSSSSSSSSSSSSSSSGSSSSDSEGSSLPVQPEVALKRVPSPTPAPKEAVREGRPPEP 2598
Query: 168 SKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSS 202
+ K +RR+ SSSSSSSSSSSSSSSSSSSSSSSSS
Sbjct: 2599 TPAKRKRRSSSSSSSSSSSSSSSSSSSSSSSSSSS 2633
Score = 55.8 bits (133), Expect = 5e-08
Identities = 54/223 (24%), Positives = 94/223 (42%), Gaps = 17/223 (7%)
Query: 66 GRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEK-ARGGLSGPQGGRARGAM 124
GR+R G R+ A R SR R S P + +R + R+R
Sbjct: 552 GRSRSARRG-RSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPA 610
Query: 125 AHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSS 184
SR R+ +R RSR R +R+ +SR R + + RS+ ARR S + +
Sbjct: 611 RRGRSRSRTPARRRSRTRSPVRRRSRSRSPARR-----SGRSRSRTPARRGRSRSRTPAR 665
Query: 185 SSSSSSSSSSSSSSSSSSDGRKKRGKYKDKR-RKKKKKRKKLKKKGKEKAEAQQVEALPG 243
S S + + S S S +RG+ + + R+ + + + L ++G+ + Q G
Sbjct: 666 RGRSRSRTPARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSG 725
Query: 244 PSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQS 286
S ++ ++S T +++SR + M K +R+S
Sbjct: 726 SSSERKNKSR---------TSQRRSRSNSSPEMKKSRISSRRS 759
Score = 55.8 bits (133), Expect = 5e-08
Identities = 47/167 (28%), Positives = 77/167 (46%), Gaps = 3/167 (1%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSP-PLPLEKARGGLSGPQGGRARGAMA 125
R+R G+ AA ++ S ++P P+A +P LP G S +G G+ +
Sbjct: 1595 RSRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSS 1654
Query: 126 HVGSRKRS-RSRSRSRG-RGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSS 183
S + +SR+ RG R S + K KSR R S S+ + K + RR+RS+SSS
Sbjct: 1655 TESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSP 1714
Query: 184 SSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGK 230
+ S + S S SS + +K + +R + K ++G+
Sbjct: 1715 ETRSRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGR 1761
Score = 55.5 bits (132), Expect = 7e-08
Identities = 50/182 (27%), Positives = 78/182 (42%), Gaps = 14/182 (7%)
Query: 64 GGGRARDGTW----GVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGR 119
G R+R W + G + R SR+ RP S + RG + GR
Sbjct: 504 GHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRNT--QRRGRSRSARRGR 561
Query: 120 ARGAMAHVGSRKRSRS---RSRSRGRGSEKRKKKSRKDTSRNCSAST----SQERSKQKA 172
+ R RSR+ R RSR R +R+ +SR T R + T + RS+ A
Sbjct: 562 SHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSRTPARRGRSRSRTPA 621
Query: 173 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYK-DKRRKKKKKRKKLKKKGKE 231
RRR+R+ S S S S + S S S + R+ R + + RR + + R ++ G+
Sbjct: 622 RRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTPARRSGRS 681
Query: 232 KA 233
++
Sbjct: 682 RS 683
Score = 54.3 bits (129), Expect = 2e-07
Identities = 45/156 (28%), Positives = 67/156 (42%), Gaps = 15/156 (9%)
Query: 76 RTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGG-----LSGPQGGRA--RGAMAHVG 128
R+ S SR R P SSP P EK+R S P+ RG
Sbjct: 1708 RSASSSPETRSRTPPRHRRSPSVSSPE-PAEKSRSSRRRRSASSPRTKTTSRRGRSPSPK 1766
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
R RSRSRSR + +++ R +S++ S + RS+ + RR R S S S +
Sbjct: 1767 PRGLQRSRSRSRREKTRTTRRRDRSGSSQSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPA 1826
Query: 189 SSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK 224
SS +SS R++RG+ + +K+ R +
Sbjct: 1827 RQESSRTSS-------RRRRGRSRTPPTSRKRSRSR 1855
Score = 52.8 bits (125), Expect = 4e-07
Identities = 59/225 (26%), Positives = 89/225 (39%), Gaps = 23/225 (10%)
Query: 80 SGAALPSRPASRA-APRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSR 138
S + P+R SR +P S P ++ S R R R RSRSR+
Sbjct: 615 SRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPARRGRSRSRTP 674
Query: 139 SRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARR--------RTRSSSSSSSSSSSSS 190
+R G + + +R+ SR+ + + RS+ RR + R S SSS + S
Sbjct: 675 ARRSGRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGRSHSRTPQRRGRSGSSSERKNKS 734
Query: 191 SSSSSSSSSSSSDGRKK------RGKYKDKRRKKKKKRKKLKK--KGKEKAEAQQVEALP 242
+S S S+SS KK R + R K K R L++ G Q+ + P
Sbjct: 735 RTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSRLSLRRSLSGSSPCPKQKSQTPP 794
Query: 243 GPSLDQWHRSAGEEEDGPVLTDEQKSRIQAM-KPMTKEEWDARQS 286
S RS + T ++SR + P K + +RQS
Sbjct: 795 RRS-----RSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTPSRQS 834
Score = 51.2 bits (121), Expect = 1e-06
Identities = 44/163 (26%), Positives = 73/163 (44%), Gaps = 8/163 (4%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMA- 125
R R G G ++ SR +SR R + +PP +++R S R+R +
Sbjct: 1812 RRRRGGSGYHSRSPARQESSRTSSRRR-RGRSRTPPTSRKRSRSRTSPAPWKRSRSRASP 1870
Query: 126 --HVGSRKR----SRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSS 179
H SR R SR RSRSR +R+ +SR +R S S + S++++R RT
Sbjct: 1871 ATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPV 1930
Query: 180 SSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKR 222
+ S S + ++ S S + R+ R + R++ + R
Sbjct: 1931 TRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSR 1973
Score = 50.8 bits (120), Expect = 2e-06
Identities = 69/258 (26%), Positives = 95/258 (36%), Gaps = 16/258 (6%)
Query: 40 GAASADTGVRGCGARGPAPLLASAGGGRARDGTWGVRTKG-SGAALPSRPASRAAPRPEA 98
G + + T R +R P S GR+R T R + S R SR+ R
Sbjct: 656 GRSRSRTPARRGRSRSRTPARRS---GRSRSRTPARRGRSRSRTPRRGRSRSRSLVRRGR 712
Query: 99 SSPPLPLEKARGGLSGPQGGRARGAMAHVGSR-----KRSR-SRSRSRGRGSEKRKKKSR 152
S P + R G S + ++R + S K+SR S RSR S + K KSR
Sbjct: 713 SHSRTPQRRGRSGSSSERKNKSRTSQRRSRSNSSPEMKKSRISSRRSRSLSSPRSKAKSR 772
Query: 153 KDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYK 212
R+ S S+ KQK++ R S S SS + S + S SSSS K++ K
Sbjct: 773 LSLRRSLSGSSPCP--KQKSQTPPRRSRSGSSQPKAKSRTPPRRSRSSSSPPPKQKSKTP 830
Query: 213 DKRRKKKKKRKKLKKKGKEKAEAQQVEALPG-PSLDQWHRSAGEEEDGPVLTDEQKSRIQ 271
++ K G + S+ RS E P L SR
Sbjct: 831 SRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKSRTPSRHS 890
Query: 272 ---AMKPMTKEEWDARQS 286
+ P K RQS
Sbjct: 891 CSGSSPPRVKSSTPPRQS 908
Score = 50.1 bits (118), Expect = 3e-06
Identities = 34/125 (27%), Positives = 53/125 (42%), Gaps = 11/125 (8%)
Query: 153 KDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYK 212
+++S + S + Q++ K+K R RS SSS SS +K R + +
Sbjct: 175 RESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKK-----------KKHRSESE 223
Query: 213 DKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQA 272
K+RK + K K+K K+K + P P + HRS + T +SR A
Sbjct: 224 SKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSRSRSAA 283
Query: 273 MKPMT 277
K T
Sbjct: 284 AKTHT 288
Score = 48.9 bits (115), Expect = 6e-06
Identities = 52/194 (26%), Positives = 85/194 (43%), Gaps = 18/194 (9%)
Query: 47 GVRGCGARGPAPLLASAGGGRARDG------TWGVRTKGSGAALP-SRPASRAAP----R 95
G G +R PA +S R R G T R++ + P R SRA+P R
Sbjct: 1816 GGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRSRTSPAPWKRSRSRASPATHRR 1875
Query: 96 PEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRS------RSRSRGRGSEKRKK 149
+ +P + ++R S R+R + R RSR+ RSRSR +R+
Sbjct: 1876 SRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSRASPVSRRRSRSRTPPVTRRRS 1935
Query: 150 KSRKDTSRNCSASTSQERSKQKARRRTRS-SSSSSSSSSSSSSSSSSSSSSSSSDGRKKR 208
+SR T+R S S + +++++R RT + S S +S + S S +S R+ R
Sbjct: 1936 RSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRRSRSRTSPVTRRRSR 1995
Query: 209 GKYKDKRRKKKKKR 222
+ R++ + R
Sbjct: 1996 SRTSPVTRRRSRSR 2009
Score = 48.1 bits (113), Expect = 1e-05
Identities = 57/224 (25%), Positives = 83/224 (37%), Gaps = 10/224 (4%)
Query: 79 GSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSR 138
GS L +P++ R E+ S P K R L Q R+ G+ V S+ R R R
Sbjct: 1540 GSSQELDVKPSASPQERSESDSSPDSKAKTRTPLR--QRSRS-GSSPEVDSKSRLSPR-R 1595
Query: 139 SRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSS 198
SR S + K K R + +S E R R S S SSS S SSS+
Sbjct: 1596 SRSGSSPEVKDKPRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSST 1655
Query: 199 SSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEED 258
SS + K + R + + K + + ++ E L + RSA +
Sbjct: 1656 ESSPEHPPKSRTARRGSRSSPEPKTKSRTPPRRRSSRSSPELTRKARLSRRSRSASSSPE 1715
Query: 259 GPVLTDEQKSR---IQAMKPMTKEEWDARQSIIRKVVDPETGRT 299
T + R + + +P K R+ R P T T
Sbjct: 1716 TRSRTPPRHRRSPSVSSPEPAEKSRSSRRR---RSASSPRTKTT 1756
Score = 47.8 bits (112), Expect = 1e-05
Identities = 36/129 (27%), Positives = 63/129 (48%), Gaps = 4/129 (3%)
Query: 85 PSRPASRAA-PRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRG 143
P R A A P PE P + ++ S + + G R S S R R +
Sbjct: 153 PQRRAREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKS 212
Query: 144 SEKRKKKSRKDTSRNCSASTSQERSKQKA--RRRTRSSSSSSSSSSSSSSSSSSSSSSSS 201
S+K+K +S ++ + S + +SK+K+ ++R RS S++ + S + S+S+ S+SS
Sbjct: 213 SKKKKHRSESESKKRKHRSPTP-KSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASS 271
Query: 202 SDGRKKRGK 210
SD + R +
Sbjct: 272 SDTSRSRSR 280
Score = 46.6 bits (109), Expect = 3e-05
Identities = 39/150 (26%), Positives = 65/150 (43%), Gaps = 6/150 (4%)
Query: 88 PASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKR 147
P SR A R SSP P K+R P R+ + + + R RSRS E R
Sbjct: 1663 PKSRTARRGSRSSPE-PKTKSRT----PPRRRSSRSSPELTRKARLSRRSRSASSSPETR 1717
Query: 148 KKKS-RKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRK 206
+ R S + S+ E+S+ RRR+ SS + ++S S S S R
Sbjct: 1718 SRTPPRHRRSPSVSSPEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRS 1777
Query: 207 KRGKYKDKRRKKKKKRKKLKKKGKEKAEAQ 236
+R K + RR+ + + + ++++ ++
Sbjct: 1778 RREKTRTTRRRDRSGSSQSTSRRRQRSRSR 1807
Score = 45.8 bits (107), Expect = 5e-05
Identities = 51/218 (23%), Positives = 81/218 (37%), Gaps = 53/218 (24%)
Query: 86 SRPASRAAPRP--------EASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRS 137
+R A + AP P E+SS P K + GR + + RK+S +
Sbjct: 157 AREAKQPAPEPPKPYSLVRESSSSRSPTPKQKKKKKKKDRGRRSESSSPRRERKKSSKKK 216
Query: 138 RSRGRGSEKRKK---------KSRKDTSRNCSASTSQERSKQKARRRTRS-SSSSSSSSS 187
+ R K++K + KD R S ST+ ++A R T + S+SSS +S
Sbjct: 217 KHRSESESKKRKHRSPTPKSKRKSKDKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSR 276
Query: 188 SSSSSSSSSS--------SSSSSDGRKKRG---------------------------KYK 212
S S S+++ + S S + GR+ G Y+
Sbjct: 277 SRSRSAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYE 336
Query: 213 DKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWH 250
DK + KK+K E++ P P L + H
Sbjct: 337 DKDKDKKEKSATRPSPSPERSSTGPEPPAPTPLLAERH 374
Score = 44.7 bits (104), Expect = 1e-04
Identities = 45/185 (24%), Positives = 78/185 (42%), Gaps = 24/185 (12%)
Query: 77 TKGSGAALPSRPASRAAPRP----EASSPPLPLEKARGGLSGPQG---------GRARGA 123
TK S A S + + AP P E SS P ++ G + GR+R
Sbjct: 428 TKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSP 487
Query: 124 MAHVGSRKRSRS---RSRSRGRGSEKRKKKSRKDTSRNCS-----ASTSQER---SKQKA 172
R RSR+ R SR R + R+ +S + R+ S S S +R S+ +
Sbjct: 488 ATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSRSRN 547
Query: 173 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
+R S S+ S S S ++ S S + R+ R + + R++ + R +++ + +
Sbjct: 548 TQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRSRSR 607
Query: 233 AEAQQ 237
A++
Sbjct: 608 TPARR 612
Score = 44.7 bits (104), Expect = 1e-04
Identities = 47/178 (26%), Positives = 73/178 (41%), Gaps = 43/178 (24%)
Query: 85 PSRPASRAAPR--------------PEASS--------PPLPLEKARGGLSGPQGGRARG 122
P PA RA PR PE SS PP RG S P+
Sbjct: 1624 PKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRTARRGSRSSPEPK---- 1679
Query: 123 AMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSS 182
++ R+ R RS R S + +K+R ++S+ + RS+ R R S SS
Sbjct: 1680 ------TKSRTPPRRRS-SRSSPELTRKARLSRRSRSASSSPETRSRTPPRHRRSPSVSS 1732
Query: 183 ------SSSSSSSSSSSSSSSSSSSSDGR----KKRGKYKDKRRKKKKKRKKLKKKGK 230
S SS S+SS + ++S GR K RG + + R +++K + +++ +
Sbjct: 1733 PEPAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDR 1790
Score = 44.7 bits (104), Expect = 1e-04
Identities = 38/123 (30%), Positives = 57/123 (46%), Gaps = 11/123 (8%)
Query: 87 RPASRAAP----RPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRS----- 137
R SR +P R + + P+ ++R S R+R + R+RSRSR+
Sbjct: 1981 RSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSR-SRTPPAIRRRSRSRTPLLPR 2039
Query: 138 -RSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSS 196
RSR R +++SR T R S RS RRR+ S SSS S S++ ++ +
Sbjct: 2040 KRSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNH 2099
Query: 197 SSS 199
S S
Sbjct: 2100 SGS 2102
Score = 44.3 bits (103), Expect = 2e-04
Identities = 59/254 (23%), Positives = 94/254 (37%), Gaps = 48/254 (18%)
Query: 83 ALPS--RPASRAAPRPEASSPPLPLEKARGGLSG----------PQGGRARGAMAH---- 126
ALP RP SR+ PE ++ L ++ R G P G R+R +
Sbjct: 1488 ALPQTPRPRSRSPSSPELNNKCLTPQRERSGSESSVDQKTVARTPLGQRSRSGSSQELDV 1547
Query: 127 ---VGSRKRSRS--------------RSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSK 169
++RS S R RSR S + KSR R+ S S+ + + K
Sbjct: 1548 KPSASPQERSESDSSPDSKAKTRTPLRQRSRSGSSPEVDSKSRLSPRRSRSGSSPEVKDK 1607
Query: 170 QKARRRTRSSSSSSSSSSSSSSSS----SSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKL 225
+A R +S S SS + + + S S SSS G G + + + +
Sbjct: 1608 PRAAPRAQSGSDSSPEPKAPAPRALPRRSRSGSSSKGRGPSPEGSSSTESSPEHPPKSRT 1667
Query: 226 KKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDE----QKSRIQAMKPMTKEEW 281
++G + + ++ P RS+ P LT + ++SR + P T+
Sbjct: 1668 ARRGSRSSPEPKTKSRTPPR----RRSS---RSSPELTRKARLSRRSRSASSSPETRSRT 1720
Query: 282 DARQSIIRKVVDPE 295
R V PE
Sbjct: 1721 PPRHRRSPSVSSPE 1734
Score = 42.4 bits (98), Expect = 6e-04
Identities = 58/254 (22%), Positives = 98/254 (38%), Gaps = 23/254 (9%)
Query: 56 PAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASR-----AAPRPEASS--PPLPLEKA 108
P P S + + GS + S P S+ A R ++ S P + ++
Sbjct: 425 PQPTKVSRHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRS 484
Query: 109 RGGLSGPQG-GRARGAMAHVGSRKRS----RSRSRSR-GRG-SEKRKKKSRKDTSRNCSA 161
R + +G R+R SR RS RSRS R GR S +R+ +SR S
Sbjct: 485 RSPATAKRGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGRSRSPQRPGWSR 544
Query: 162 STSQER---SKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKK 218
S + +R S+ R R+ S S ++ S S + + S S + R++ RR+
Sbjct: 545 SRNTQRRGRSRSARRGRSHSRSPATRGRSRSRTPARRGRSRSRTPARRRSRSRTPTRRRS 604
Query: 219 KKKRKKLKKKGKEKAEAQQVEALPGP------SLDQWHRSAGEEEDGPVLTDEQKSRIQA 272
+ + + + + + A++ P S RS P +SR A
Sbjct: 605 RSRTPARRGRSRSRTPARRRSRTRSPVRRRSRSRSPARRSGRSRSRTPARRGRSRSRTPA 664
Query: 273 MKPMTKEEWDARQS 286
+ ++ AR+S
Sbjct: 665 RRGRSRSRTPARRS 678
Score = 41.6 bits (96), Expect = 0.001
Identities = 50/194 (25%), Positives = 83/194 (42%), Gaps = 19/194 (9%)
Query: 56 PAPLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEA-----SSPPLPLEKARG 110
PAP S R+R R S L SR SR+ P + S + ++R
Sbjct: 1858 PAPWKRS----RSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRS 1913
Query: 111 GLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQ 170
S R+R V +R+RSRSR+ + R S R + SR+ + ++ RS+
Sbjct: 1914 RASPVSRRRSRSRTPPV-TRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRS 1972
Query: 171 K----ARRRTRSSSS-----SSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKK 221
+ RRR+RS +S S S +S + S S +S R+ R + R++ +
Sbjct: 1973 RTSPITRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRS 2032
Query: 222 RKKLKKKGKEKAEA 235
R L + + ++ +
Sbjct: 2033 RTPLLPRKRSRSRS 2046
Score = 40.8 bits (94), Expect = 0.002
Identities = 47/168 (27%), Positives = 71/168 (42%), Gaps = 33/168 (19%)
Query: 67 RARDGTWGVRTKGSGAALPS---RPASRAAP----RPEASSPPLPLEKARGGLSGPQGGR 119
R+R T V + S + P+ R SR P R + +PP+ ++R S R
Sbjct: 1922 RSRSRTPPVTRRRSRSRTPTTRRRSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPITRRR 1981
Query: 120 ARGAMAHVGSRKRSRSRS------RSRGRGSEKRKKKSRKDT------------------ 155
+R + V +R+RSRSR+ RSR R S +++SR T
Sbjct: 1982 SRSRTSPV-TRRRSRSRTSPVTRRRSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRK 2040
Query: 156 -SRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSS 202
SR+ S + RS+ + R R S + S + S+S SSS S
Sbjct: 2041 RSRSRSPLAIRRRSRSRTPRTARGKRSLTRSPPAIRRRSASGSSSDRS 2088
Score = 40.4 bits (93), Expect = 0.002
Identities = 44/213 (20%), Positives = 77/213 (36%), Gaps = 10/213 (4%)
Query: 85 PSRPASRAAPRPEASSPPLPLEKARGGLSGP-----QGGRARGAMAHVGS-RKRSRS-RS 137
P+ + + R ASSP RG P Q R+R + R+R RS S
Sbjct: 1735 PAEKSRSSRRRRSASSPRTKTTSRRGRSPSPKPRGLQRSRSRSRREKTRTTRRRDRSGSS 1794
Query: 138 RSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSS 197
+S R ++ + +SR R + ++ RT S S + +S S S
Sbjct: 1795 QSTSRRRQRSRSRSRVTRRRRGGSGYHSRSPARQESSRTSSRRRRGRSRTPPTSRKRSRS 1854
Query: 198 SSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEE 257
+S + ++ R + ++ + R L + + ++ V S R
Sbjct: 1855 RTSPAPWKRSRSRASPATHRRSRSRTPLISRRRSRSRTSPVSRRRSRSRTSVTRRRSRSR 1914
Query: 258 DGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRK 290
PV +SR P+T+ +R R+
Sbjct: 1915 ASPVSRRRSRSR---TPPVTRRRSRSRTPTTRR 1944
Score = 39.7 bits (91), Expect = 0.004
Identities = 63/282 (22%), Positives = 94/282 (33%), Gaps = 82/282 (29%)
Query: 41 AASADTGVRGCGARGPAPLLASAGGGRA---RDGTWGVRTKGSGAALPSRPAS------- 90
+A+A T R P+P G G A GT + S +P+S
Sbjct: 281 SAAAKTHTTALAGRSPSPASGRRGEGDAPFSEPGTTSTQRPSSPETATKQPSSPYEDKDK 340
Query: 91 --------RAAPRPEASS----PPLP---LEKARGGLSGPQGGRARGAMAHVGSRKRSRS 135
R +P PE SS PP P L + GG P
Sbjct: 341 DKKEKSATRPSPSPERSSTGPEPPAPTPLLAERHGGSPQPLA------------------ 382
Query: 136 RSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSS---------- 185
S++ + AS +++RS K+ + SSSS SS
Sbjct: 383 -----------TTPLSQEPVNPPSEASPTRDRSPPKSPEKLPQSSSSESSPPSPQPTKVS 431
Query: 186 --SSSSSSS-------------SSSSSSSSSSDGRKKRGK---YKDKRRKKKKKRKKLKK 227
+SSS S SSS +S + S GR KR K + RR + + K
Sbjct: 432 RHASSSPESPKPAPAPGSHREISSSPTSKNRSHGRAKRDKSHSHTPSRRMGRSRSPATAK 491
Query: 228 KGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSR 269
+G+ ++ QW RS + G + +++ R
Sbjct: 492 RGRSRSRTPTKRGHSRSRSPQWRRSRSAQRWGRSRSPQRRGR 533
Score = 39.3 bits (90), Expect = 0.005
Identities = 39/148 (26%), Positives = 65/148 (43%), Gaps = 9/148 (6%)
Query: 95 RPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRS------RSRGRGSEKRK 148
R + +PP+ ++R R+R + + +R+RSRSR+ RSR R S +
Sbjct: 1945 RSRSRTPPVTRRRSRSRTPPVTRRRSRSRTSPI-TRRRSRSRTSPVTRRRSRSRTSPVTR 2003
Query: 149 KKSRKDTSRNCSASTSQERSKQKARRRTRSSSS-SSSSSSSSSSSSSSSSSSSSSDGRKK 207
++SR TS + S+ R+ RRR+RS + S S S + S S R
Sbjct: 2004 RRSRSRTS-PVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLAIRRRSRSRTPRTA 2062
Query: 208 RGKYKDKRRKKKKKRKKLKKKGKEKAEA 235
RGK R +R+ +++ +
Sbjct: 2063 RGKRSLTRSPPAIRRRSASGSSSDRSRS 2090
Score = 37.7 bits (86), Expect = 0.015
Identities = 34/157 (21%), Positives = 62/157 (39%), Gaps = 6/157 (3%)
Query: 144 SEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSD 203
+EK+ ++ R + S Q+ R + + S SSSS S +
Sbjct: 128 NEKKNERLRAAFGISDSYVDGSSFDPQRRAREAKQPAPEPPKPYSLVRESSSSRSPTPKQ 187
Query: 204 GRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLT 263
+KK+ K + +R + R++ KK K+K + E S + HRS +
Sbjct: 188 KKKKKKKDRGRRSESSSPRRERKKSSKKKKHRSESE-----SKKRKHRSPTPKSKRK-SK 241
Query: 264 DEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTR 300
D+++ R ++ P K R + +T R+R
Sbjct: 242 DKKRKRSRSTTPAPKSRRAHRSTSADSASSSDTSRSR 278
Score = 37.7 bits (86), Expect = 0.015
Identities = 45/195 (23%), Positives = 66/195 (33%), Gaps = 33/195 (16%)
Query: 61 ASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRA 120
+S+ + + + G++LP +P A + S P P E R G
Sbjct: 2545 SSSSSSSSSSSSGSSSSDSEGSSLPVQP--EVALKRVPSPTPAPKEAVREGRPPEPTPAK 2602
Query: 121 RGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQK--------- 171
R + S S S S S S S +S + S+S+S S K
Sbjct: 2603 RKRRSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSSPSPAKPGPQALPKP 2662
Query: 172 --------ARRRTRSSSSSSSSSSSSSSSSSS--------------SSSSSSSDGRKKRG 209
RR+RS S S S S S SSSS+ +RG
Sbjct: 2663 ASPKKPPPGERRSRSPRKPIDSLRDSRSLSYSPVERRRPSPQPSPRDQQSSSSERGSRRG 2722
Query: 210 KYKDKRRKKKKKRKK 224
+ D R K+R++
Sbjct: 2723 QRGDSRSPSHKRRRE 2737
Score = 34.7 bits (78), Expect = 0.12
Identities = 40/151 (26%), Positives = 67/151 (44%), Gaps = 17/151 (11%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKA-----RGGLSGPQGG--- 118
+A+ T R++ S + P + + + + +SS P P K+ +G ++ PQ
Sbjct: 805 KAKSRTPPRRSRSSSSPPPKQKSKTPSRQSHSSSSPHPKVKSGTPPRQGSITSPQANEQS 864
Query: 119 ----RARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKA-- 172
R + +SR+ SR GS + KS ++ S S+S + K KA
Sbjct: 865 VTPQRRSCFESSPDPELKSRTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQ-PKVKAII 923
Query: 173 --RRRTRSSSSSSSSSSSSSSSSSSSSSSSS 201
R+R+ S SSS S S +S ++ S S S
Sbjct: 924 SPRQRSHSGSSSPSPSRVTSRTTPRRSRSVS 954
Score = 34.3 bits (77), Expect = 0.16
Identities = 34/121 (28%), Positives = 56/121 (46%), Gaps = 10/121 (8%)
Query: 87 RPASRAAP----RPEASSPPLPLEKARGG--LSGPQGGRARGAMAHVGSRKRSRSRSRSR 140
R SR +P R + +PP ++R L + R+R +A R+RSRSR+
Sbjct: 2005 RSRSRTSPVTRRRSRSRTPPAIRRRSRSRTPLLPRKRSRSRSPLA---IRRRSRSRTPRT 2061
Query: 141 GRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSS 200
RG ++ +S R ++ +S +RS+ TR+ S S + + +SS S S
Sbjct: 2062 ARG-KRSLTRSPPAIRRRSASGSSSDRSRSATPPATRNHSGSRTPPVALNSSRMSCFSRP 2120
Query: 201 S 201
S
Sbjct: 2121 S 2121
Score = 33.1 bits (74), Expect = 0.36
Identities = 39/176 (22%), Positives = 68/176 (38%), Gaps = 8/176 (4%)
Query: 76 RTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGG-----RARGAMAHVGSR 130
R+K R S ++P P+ S P ++R G S P+ R + + +
Sbjct: 766 RSKAKSRLSLRRSLSGSSPCPKQKSQTPP-RRSRSGSSQPKAKSRTPPRRSRSSSSPPPK 824
Query: 131 KRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSS 190
++S++ SR + S K + T + TS + ++Q + RS SS S
Sbjct: 825 QKSKTPSR-QSHSSSSPHPKVKSGTPPRQGSITSPQANEQSVTPQRRSCFESSPDPELKS 883
Query: 191 SSSSSSSSSSSSDGR-KKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPS 245
+ S S S SS R K + + + K+K + + + P PS
Sbjct: 884 RTPSRHSCSGSSPPRVKSSTPPRQSPSRSSSPQPKVKAIISPRQRSHSGSSSPSPS 939
Score = 32.0 bits (71), Expect = 0.81
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 4/124 (3%)
Query: 77 TKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSR 136
+ S ++ S +S ++P P P + A P R+R + S + SRS
Sbjct: 2632 SSSSSSSSSSSSSSSSSPSPAKPGPQALPKPASPKKPPPGERRSRSPRKPIDSLRDSRSL 2691
Query: 137 SRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSS 196
S S +R++ S + + R+ +S+S+ S++ R +RS S + S
Sbjct: 2692 SYS----PVERRRPSPQPSPRDQQSSSSERGSRRGQRGDSRSPSHKRRRETPSPRPMRHR 2747
Query: 197 SSSS 200
SS S
Sbjct: 2748 SSRS 2751
Score = 30.0 bits (66), Expect = 3.1
Identities = 29/119 (24%), Positives = 46/119 (38%), Gaps = 5/119 (4%)
Query: 94 PRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSR-GRGSEKRKKKSR 152
P S P P EK++ L G+++ K S S G S + K +S+
Sbjct: 1007 PSLSGSKSPCPQEKSKDSLVQS----CPGSLSLCAGVKSSTPPGESYFGVSSLQLKGQSQ 1062
Query: 153 KDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKY 211
S+ + R +S S +S S SSS + +S S R+ RG++
Sbjct: 1063 TSPDHRSDTSSPEVRQSHSESPSLQSKSQTSPKGGRSRSSSPVTELASRSPIRQDRGEF 1121
Score = 29.6 bits (65), Expect = 4.0
Identities = 58/284 (20%), Positives = 104/284 (36%), Gaps = 40/284 (14%)
Query: 57 APLLASAGGGRARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQ 116
A + +S G + G ++ KG P + ++P S P +++ S P+
Sbjct: 1037 AGVKSSTPPGESYFGVSSLQLKGQSQTSPDHRSDTSSPEVRQSHSESPSLQSKSQTS-PK 1095
Query: 117 GGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRT 176
GGR+R + RS R + RG S KS S E+S R
Sbjct: 1096 GGRSRSSSPVTELASRSPIR-QDRGEFSASPMLKS----------GMSPEQS------RF 1138
Query: 177 RSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQ 236
+S SSS + S+S S ++ S + +D ++ K+K
Sbjct: 1139 QSDSSSYPTVDSNSLLGQSRLETAESKEKMALPPQEDATASPPRQ--------KDKFSPF 1190
Query: 237 QVEALPGPSL--DQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDP 294
V+ P SL R+ E G + E K + A+ +++E ++ K +P
Sbjct: 1191 PVQDRPESSLVFKDTLRTPPRERSGAGSSPETKEQNSALPTSSQDE--ELMEVVEKSEEP 1248
Query: 295 ETGRTRLIKGDGEVLEEIVTKERHREINKVGVAPLPAIRPQLCL 338
G++L + ++ + + +P RP + L
Sbjct: 1249 A----------GQILSHLSSELKEMSTSNFESSPEVEERPAVSL 1282
>gi|41327773 DEAD (Asp-Glu-Ala-Asp) box polypeptide 46 [Homo
sapiens]
Length = 1031
Score = 63.2 bits (152), Expect = 3e-10
Identities = 36/108 (33%), Positives = 54/108 (50%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
SR R + RSRSR R +R + +D SR S S++R + ++R R R S SSS + S
Sbjct: 52 SRSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKS 111
Query: 189 SSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQ 236
+ + S S + G + K KDK K+ +K K + K E +
Sbjct: 112 KKTENRSRSKEKTDGGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEE 159
Score = 62.4 bits (150), Expect = 6e-10
Identities = 37/111 (33%), Positives = 56/111 (50%)
Query: 118 GRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTR 177
G R + + R+R RSRSR + R + +K+ R+ SR S + RS+ + RRR+R
Sbjct: 35 GDDRRSRSRDRDRRRERSRSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSR 94
Query: 178 SSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKK 228
S S S SSS + S + + S K G K +KK K K+ +K+
Sbjct: 95 SRSRGRRSRSSSPGNKSKKTENRSRSKEKTDGGESSKEKKKDKDDKEDEKE 145
Score = 62.0 bits (149), Expect = 7e-10
Identities = 40/108 (37%), Positives = 54/108 (50%), Gaps = 5/108 (4%)
Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSS 189
R RSR R R R R + K++SR + S S+ER + + RRR+RS S S S
Sbjct: 39 RSRSRDRDRRRERSRSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSR 98
Query: 190 SSSSSSSSSSSSSDGRKKRGKYKDK-----RRKKKKKRKKLKKKGKEK 232
S SSS + S + R + K+K K+KKK K K+ KEK
Sbjct: 99 GRRSRSSSPGNKSKKTENRSRSKEKTDGGESSKEKKKDKDDKEDEKEK 146
Score = 58.2 bits (139), Expect = 1e-08
Identities = 47/174 (27%), Positives = 75/174 (43%), Gaps = 11/174 (6%)
Query: 117 GGRARGAMAHVGSRKRSRSRSRSRG-------RGSEKRKKKSRKDTSRNCSASTSQERSK 169
G +R SR RS SRSRSR RG ++R + +D R S S + RS+
Sbjct: 2 GRESRHYRKRSASRGRSGSRSRSRSPSDKRSKRGDDRRSRSRDRDRRRERSRSRDKRRSR 61
Query: 170 QKAR---RRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLK 226
+ R RR+RS S S S S S S GR+ R + KK + R + K
Sbjct: 62 SRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSRSK 121
Query: 227 KKGKEKAEAQQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEE 280
+K +++ + D+ + AG + L +E + R + ++ +E+
Sbjct: 122 EKTDGGESSKEKKKDKDDKEDEKEKDAGNFDQNK-LEEEMRKRKERVEKWREEQ 174
Score = 57.4 bits (137), Expect = 2e-08
Identities = 47/208 (22%), Positives = 88/208 (42%), Gaps = 13/208 (6%)
Query: 106 EKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQ 165
E++R R R + SR+R RSR R R R ++R+ +SR R+ S+S
Sbjct: 50 ERSRSRDKRRSRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGN 109
Query: 166 ERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSD-GRKKRGKYKDKRRKKKKK--- 221
+ K + R R++ + SS D G + K +++ RK+K++
Sbjct: 110 KSKKTENRSRSKEKTDGGESSKEKKKDKDDKEDEKEKDAGNFDQNKLEEEMRKRKERVEK 169
Query: 222 -RKKLKKKGKEKAEAQQVEALPGPSLDQWH-RSAGEEEDGPVLTDEQKSRIQAMKPMTKE 279
R++ +KK E + E +W ++ED P +++ + ++ E
Sbjct: 170 WREEQRKKAMENIGELKKEIEEMKQGKKWSLEDDDDDEDDPAEAEKEGNEMEG------E 223
Query: 280 EWDARQSIIRKVVDP-ETGRTRLIKGDG 306
E D + + +V + + R +KG G
Sbjct: 224 ELDPLDAYMEEVKEEVKKFNMRSVKGGG 251
Score = 47.8 bits (112), Expect = 1e-05
Identities = 48/197 (24%), Positives = 80/197 (40%), Gaps = 24/197 (12%)
Query: 126 HVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSS 185
H R SR RS SR R K+S++ R + RS+ + RRR RS S
Sbjct: 7 HYRKRSASRGRSGSRSRSRSPSDKRSKRGDDR-------RSRSRDRDRRRERSRSRDKRR 59
Query: 186 SSSSSSSSSSSSSSSSSD--GRKKRGKYKDKRRKKKKKRKKL--------KKKGKEKAEA 235
S S S S D ++R + +D+RR + + R + K K E
Sbjct: 60 SRSRDRKRLRRSRSRERDRSRERRRSRSRDRRRSRSRSRGRRSRSSSPGNKSKKTENRSR 119
Query: 236 QQVEALPGPSLDQWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPE 295
+ + G S + + ++ED +++K + +EE R+ + K E
Sbjct: 120 SKEKTDGGESSKEKKKDKDDKED-----EKEKDAGNFDQNKLEEEMRKRKERVEKW--RE 172
Query: 296 TGRTRLIKGDGEVLEEI 312
R + ++ GE+ +EI
Sbjct: 173 EQRKKAMENIGELKKEI 189
>gi|42741684 zinc finger protein 265 isoform 1 [Homo sapiens]
Length = 330
Score = 63.2 bits (152), Expect = 3e-10
Identities = 44/102 (43%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Query: 129 SRKRSRS-RSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
SR +SRS SRS R S +SR SR+ S+S+SQ RS+ +R R+RS S S SSS
Sbjct: 202 SRSKSRSSHSRSSSRSSSPSSSRSRS-RSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSS 260
Query: 188 SSSSSSSS------SSSSSSSDGRKKRGKYKDKRRKKKKKRK 223
S SSS SSSSSS + +KR + + +KKR+
Sbjct: 261 RSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRR 302
Score = 56.2 bits (134), Expect = 4e-08
Identities = 34/91 (37%), Positives = 48/91 (52%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
SR RSRSRSRS + + SR+ + S S S RS + + + S SSSSSS
Sbjct: 223 SRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPE 282
Query: 189 SSSSSSSSSSSSSSDGRKKRGKYKDKRRKKK 219
+ S S SSSS D +K+R + + R+ +
Sbjct: 283 RNRKRSRSRSSSSGDRKKRRTRSRSPERRHR 313
Score = 55.5 bits (132), Expect = 7e-08
Identities = 41/144 (28%), Positives = 69/144 (47%), Gaps = 10/144 (6%)
Query: 133 SRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSS-SSSSSSS 191
S ++ + + + + KSR SR+ S S+S S+ ++R R+RSSSSS S S SSS
Sbjct: 188 SEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRE 247
Query: 192 SSSSSSSSSSSDGRKKRGKYKDKRR-------KKKKKRKKLKKKGKEKAEAQQVEALPGP 244
S S S S S R RG ++R ++ RK+ + + + ++
Sbjct: 248 RSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKK-RRTRSR 306
Query: 245 SLDQWHR-SAGEEEDGPVLTDEQK 267
S ++ HR S+G G + ++K
Sbjct: 307 SPERRHRSSSGSSHSGSRSSSKKK 330
Score = 50.8 bits (120), Expect = 2e-06
Identities = 38/117 (32%), Positives = 56/117 (47%), Gaps = 6/117 (5%)
Query: 90 SRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSRSRG-RGSEKRK 148
SR++ R + S ++R S R+R + + S+SRS SR RGS +
Sbjct: 211 SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPR 270
Query: 149 KKSRKDTSRNCSASTSQERSK-----QKARRRTRSSSSSSSSSSSSSSSSSSSSSSS 200
K+S +S + + + RS+ + +RRTRS S SSS SS S S SSS
Sbjct: 271 KRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRSPERRHRSSSGSSHSGSRSSS 327
Score = 50.1 bits (118), Expect = 3e-06
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 158 NCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRK 217
N AS ++ +K+K+ RR+RS S SS S SSS SSS SSS S S + R + R
Sbjct: 184 NLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRS--RSRSSSSSQSRS 241
Query: 218 KKKKRKKLKKKG-KEKAEAQQVEALPGPSLDQWHRSAGEEE 257
+ R++ + +G K ++ ++ P + S+ E
Sbjct: 242 RSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPE 282
Score = 48.1 bits (113), Expect = 1e-05
Identities = 43/142 (30%), Positives = 60/142 (42%), Gaps = 20/142 (14%)
Query: 76 RTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRS 135
R++ + SR +SR+ SSP ++R ++R SR SR
Sbjct: 201 RSRSKSRSSHSRSSSRS------SSPSSSRSRSRSRSRSSSSSQSR-------SRSSSRE 247
Query: 136 RSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSS-------SSS 188
RSRSRG S + R +S + +S S ++ R+R+RS SSSS S S
Sbjct: 248 RSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRS 307
Query: 189 SSSSSSSSSSSSSSDGRKKRGK 210
SSS SS S R K
Sbjct: 308 PERRHRSSSGSSHSGSRSSSKK 329
>gi|42741682 zinc finger protein 265 isoform 2 [Homo sapiens]
Length = 320
Score = 63.2 bits (152), Expect = 3e-10
Identities = 44/102 (43%), Positives = 58/102 (56%), Gaps = 8/102 (7%)
Query: 129 SRKRSRS-RSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
SR +SRS SRS R S +SR SR+ S+S+SQ RS+ +R R+RS S S SSS
Sbjct: 202 SRSKSRSSHSRSSSRSSSPSSSRSRS-RSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSS 260
Query: 188 SSSSSSSS------SSSSSSSDGRKKRGKYKDKRRKKKKKRK 223
S SSS SSSSSS + +KR + + +KKR+
Sbjct: 261 RSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRR 302
Score = 54.7 bits (130), Expect = 1e-07
Identities = 36/112 (32%), Positives = 53/112 (47%), Gaps = 12/112 (10%)
Query: 133 SRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSS-SSSSSSS 191
S ++ + + + + KSR SR+ S S+S S+ ++R R+RSSSSS S S SSS
Sbjct: 188 SEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSRE 247
Query: 192 SSSSSSSSSSSDGRKKRGKYKDKR-----------RKKKKKRKKLKKKGKEK 232
S S S S S R RG ++ R +K+ R + G K
Sbjct: 248 RSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRK 299
Score = 51.6 bits (122), Expect = 1e-06
Identities = 37/96 (38%), Positives = 49/96 (51%), Gaps = 11/96 (11%)
Query: 113 SGPQGGRARGAMAHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKA 172
S P R+R SR RSRS S S+ R +++SR S++ S+S S S
Sbjct: 218 SSPSSSRSR-------SRSRSRSSSSSQSRSRSSSRERSRSRGSKSRSSSRSHRGSSSPR 270
Query: 173 RRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKR 208
+R S SSSSSS + S S SSSS D +K+R
Sbjct: 271 KR----SYSSSSSSPERNRKRSRSRSSSSGDRKKRR 302
Score = 50.1 bits (118), Expect = 3e-06
Identities = 32/101 (31%), Positives = 51/101 (50%), Gaps = 3/101 (2%)
Query: 158 NCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRK 217
N AS ++ +K+K+ RR+RS S SS S SSS SSS SSS S S + R + R
Sbjct: 184 NLDASEEEDSNKKKSNRRSRSKSRSSHSRSSSRSSSPSSSRSRSRS--RSRSSSSSQSRS 241
Query: 218 KKKKRKKLKKKG-KEKAEAQQVEALPGPSLDQWHRSAGEEE 257
+ R++ + +G K ++ ++ P + S+ E
Sbjct: 242 RSSSRERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPE 282
Score = 47.0 bits (110), Expect = 2e-05
Identities = 37/132 (28%), Positives = 57/132 (43%), Gaps = 13/132 (9%)
Query: 76 RTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRS 135
R++ + SR +SR+ SSP ++R ++R SR SR
Sbjct: 201 RSRSKSRSSHSRSSSRS------SSPSSSRSRSRSRSRSSSSSQSR-------SRSSSRE 247
Query: 136 RSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSS 195
RSRSRG S + R +S + +S S ++ R+R+RS SSSS + S S
Sbjct: 248 RSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPERNRKRSRSRSSSSGDRKKRRTRSRS 307
Query: 196 SSSSSSSDGRKK 207
S + K+
Sbjct: 308 PESQVIGENTKQ 319
Score = 40.4 bits (93), Expect = 0.002
Identities = 30/96 (31%), Positives = 43/96 (44%), Gaps = 1/96 (1%)
Query: 144 SEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSD 203
SE+ +K R+ S S S S+ +R + SSS S S S S SSSSS S S SSS
Sbjct: 188 SEEEDSNKKKSNRRSRSKSRSSH-SRSSSRSSSPSSSRSRSRSRSRSSSSSQSRSRSSSR 246
Query: 204 GRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVE 239
R + K + + + +K + + E
Sbjct: 247 ERSRSRGSKSRSSSRSHRGSSSPRKRSYSSSSSSPE 282
>gi|20127499 arginine/serine-rich splicing factor 6 [Homo sapiens]
Length = 344
Score = 62.8 bits (151), Expect = 4e-10
Identities = 38/126 (30%), Positives = 62/126 (49%), Gaps = 13/126 (10%)
Query: 125 AHVGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSS 184
++ GSR RSRSR RSR R + +SR S S S+ RS+ +++ R+RS S
Sbjct: 190 SYSGSRSRSRSRRRSRSRSRRSSRSRSR-------SISKSRSRSRSRSKGRSRSRSKGRK 242
Query: 185 SSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKK------LKKKGKEKAEAQQV 238
S S S S S S S + + +Y+ R + + + K +K K + +++++
Sbjct: 243 SRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRSRSQSRSN 302
Query: 239 EALPGP 244
LP P
Sbjct: 303 SPLPVP 308
Score = 55.1 bits (131), Expect = 9e-08
Identities = 32/90 (35%), Positives = 47/90 (52%)
Query: 145 EKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSSSSSSDG 204
+K + R+ S + S S S+ RS+ ++RR +RS S S S S S S S S S S S G
Sbjct: 181 DKPRTSHRRSYSGSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSRSRSRSKGRSRSRSKG 240
Query: 205 RKKRGKYKDKRRKKKKKRKKLKKKGKEKAE 234
RK R K K K + + + + K++ E
Sbjct: 241 RKSRSKSKSKPKSDRGSHSHSRSRSKDEYE 270
Score = 55.1 bits (131), Expect = 9e-08
Identities = 47/165 (28%), Positives = 69/165 (41%), Gaps = 25/165 (15%)
Query: 79 GSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSR 138
GS + SR SR+ R + S + K+R SR RS+ RSR
Sbjct: 193 GSRSRSRSRRRSRSRSRRSSRSRSRSISKSRSR-----------------SRSRSKGRSR 235
Query: 139 SRGRGSEKRKKKSRKDTSRNCSASTSQERSK---QKARRRTRSSSSSSSSSSSSSSSSSS 195
SR +G + R K K S S S S+ RSK +K+R R+RS S + S S S
Sbjct: 236 SRSKGRKSRSKSKSKPKSDRGSHSHSRSRSKDEYEKSRSRSRSRSPKENGKGDIKSKSRS 295
Query: 196 SSSSSSSD-----GRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEA 235
S S S+ K R +R + R + + K + ++ +
Sbjct: 296 RSQSRSNSPLPVPPSKARSVSPPPKRATSRSRSRSRSKSRSRSRS 340
>gi|52426743 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 62.4 bits (150), Expect = 6e-10
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSS 189
R++ R+R R R + S R + S + + R CS S +RS+ + RRR+RS S S
Sbjct: 279 REKERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDR 338
Query: 190 SSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQW 249
S RK R + +D+RR K + RK K + K + Q
Sbjct: 339 SE-------------RKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQD------------ 373
Query: 250 HRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGE 307
+S +E+ G +D++KS +++ + E +S + G + IK +G+
Sbjct: 374 RKSKEKEKRG---SDDKKSSVKSGSREKQSEDTNTESKESDTKNEVNGTSEDIKSEGD 428
Score = 45.4 bits (106), Expect = 7e-05
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
RARD R + + SR +SR + R + S ++R R R + +H
Sbjct: 283 RARD-----RERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRR-SRSH 336
Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQER-SKQKARRRTRSSSSSSSS 185
S ++ RSRSR R R S+ R +KS K S+ S Q+R SK+K +R + SS S
Sbjct: 337 DRSERKHRSRSRDR-RRSKSRDRKSYKHRSK--SRDREQDRKSKEKEKRGSDDKKSSVKS 393
Query: 186 SSSSSSSSSSSSSSSSSDGRKK 207
S S +++ S SD + +
Sbjct: 394 GSREKQSEDTNTESKESDTKNE 415
Score = 33.1 bits (74), Expect = 0.36
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSR---------KDTSRNCSASTSQERSKQKARRRTRSS 179
SR R R RS+SR R S K + KSR + R S +S + ++ ++
Sbjct: 345 SRSRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTN 404
Query: 180 SSSSSSSSSSSSSSSSSSSSSSSD 203
+ S S + + + +S S D
Sbjct: 405 TESKESDTKNEVNGTSEDIKSEGD 428
>gi|19923485 cisplatin resistance-associated overexpressed protein
[Homo sapiens]
Length = 432
Score = 62.4 bits (150), Expect = 6e-10
Identities = 46/178 (25%), Positives = 78/178 (43%), Gaps = 28/178 (15%)
Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSS 189
R++ R+R R R + S R + S + + R CS S +RS+ + RRR+RS S S
Sbjct: 279 REKERARDRERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRRSRSHDR 338
Query: 190 SSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQW 249
S RK R + +D+RR K + RK K + K + Q
Sbjct: 339 SE-------------RKHRSRSRDRRRSKSRDRKSYKHRSKSRDREQD------------ 373
Query: 250 HRSAGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGE 307
+S +E+ G +D++KS +++ + E +S + G + IK +G+
Sbjct: 374 RKSKEKEKRG---SDDKKSSVKSGSREKQSEDTNTESKESDTKNEVNGTSEDIKSEGD 428
Score = 45.4 bits (106), Expect = 7e-05
Identities = 44/142 (30%), Positives = 67/142 (47%), Gaps = 10/142 (7%)
Query: 67 RARDGTWGVRTKGSGAALPSRPASRAAPRPEASSPPLPLEKARGGLSGPQGGRARGAMAH 126
RARD R + + SR +SR + R + S ++R R R + +H
Sbjct: 283 RARD-----RERRKRSRSRSRHSSRTSDRRCSRSRDHKRSRSRERRRSRSRDRRR-SRSH 336
Query: 127 VGSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQER-SKQKARRRTRSSSSSSSS 185
S ++ RSRSR R R S+ R +KS K S+ S Q+R SK+K +R + SS S
Sbjct: 337 DRSERKHRSRSRDR-RRSKSRDRKSYKHRSK--SRDREQDRKSKEKEKRGSDDKKSSVKS 393
Query: 186 SSSSSSSSSSSSSSSSSDGRKK 207
S S +++ S SD + +
Sbjct: 394 GSREKQSEDTNTESKESDTKNE 415
Score = 33.1 bits (74), Expect = 0.36
Identities = 22/84 (26%), Positives = 36/84 (42%), Gaps = 9/84 (10%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSR---------KDTSRNCSASTSQERSKQKARRRTRSS 179
SR R R RS+SR R S K + KSR + R S +S + ++ ++
Sbjct: 345 SRSRDRRRSKSRDRKSYKHRSKSRDREQDRKSKEKEKRGSDDKKSSVKSGSREKQSEDTN 404
Query: 180 SSSSSSSSSSSSSSSSSSSSSSSD 203
+ S S + + + +S S D
Sbjct: 405 TESKESDTKNEVNGTSEDIKSEGD 428
>gi|27734775 hypothetical protein LOC286499 [Homo sapiens]
Length = 248
Score = 62.0 bits (149), Expect = 7e-10
Identities = 46/152 (30%), Positives = 77/152 (50%), Gaps = 12/152 (7%)
Query: 128 GSRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSS 187
GS+ + + ++ +K K S N S+S +ER K++ ++ RSSSSS
Sbjct: 54 GSKALAEFEEKMNENWKKELEKSREKLLSGNESSSKKRERKKKRKKKSCRSSSSS----- 108
Query: 188 SSSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLD 247
SSS SSSSSS S D KK+GK +R+KKK + K + ++E++ E++
Sbjct: 109 --SSSDSSSSSSDSEDEEKKQGK---RRKKKKNRSYKSSQSSTHESESESKESVKKKKKS 163
Query: 248 QWHRSAGEEEDGPVLTDEQKSRIQAMKPMTKE 279
+ +E+D L+ ++K KP++ E
Sbjct: 164 K--DETEKEKDVRSLSKKRKKSYPDDKPLSSE 193
Score = 50.1 bits (118), Expect = 3e-06
Identities = 33/104 (31%), Positives = 50/104 (48%), Gaps = 5/104 (4%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
S + S S S + S K+KKKS+ +T + RS K R+++ SS SS
Sbjct: 141 SSQSSTHESESESKESVKKKKKSKDETEKE-----KDVRSLSKKRKKSYPDDKPLSSESS 195
Query: 189 SSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEK 232
S S + ++R + K+K +KKKKK+ K K K+K
Sbjct: 196 SESDYEEDVQAKKKRRCEEREQAKEKVKKKKKKQHKKHSKKKKK 239
Score = 49.3 bits (116), Expect = 5e-06
Identities = 37/133 (27%), Positives = 57/133 (42%), Gaps = 24/133 (18%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
S S S + +G ++KKK+R S S S+ SK+ +++ +S +
Sbjct: 114 SSSSSDSEDEEKKQGKRRKKKKNRSYKSSQSSTHESESESKESVKKKKKSKDETEKEKDV 173
Query: 189 SSSSSS-----------SSSSSSSSD------GRKKR-------GKYKDKRRKKKKKRKK 224
S S SS SSS SD +KKR K K K++KKK+ +K
Sbjct: 174 RSLSKKRKKSYPDDKPLSSESSSESDYEEDVQAKKKRRCEEREQAKEKVKKKKKKQHKKH 233
Query: 225 LKKKGKEKAEAQQ 237
KKK K+ + +
Sbjct: 234 SKKKKKKSGSSHK 246
>gi|168229156 NFKB activating protein [Homo sapiens]
Length = 415
Score = 61.6 bits (148), Expect = 1e-09
Identities = 52/181 (28%), Positives = 81/181 (44%), Gaps = 25/181 (13%)
Query: 134 RSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSS 193
+ + S E++KKKS S S+ERSK+ RR+ +SS S S S
Sbjct: 169 KKSTTSASTSEEEKKKKS----------SRSKERSKK--RRKKKSSKRKHKKYSEDSDSD 216
Query: 194 SSSSSSSSSDGRKKRGKYKDKRRKKKKKR-KKLKKKGKEKAEAQQVEALPGPSLDQWHRS 252
S S + SS + K+R K K+ KKKK R KK KKK +K+ + + S
Sbjct: 217 SDSETDSSDEDNKRRAKKAKKKEKKKKHRSKKYKKKRSKKSRKESSD------------S 264
Query: 253 AGEEEDGPVLTDEQKSRIQAMKPMTKEEWDARQSIIRKVVDPETGRTRLIKGDGEVLEEI 312
+ +E L + K R +A +P +A +++ + P L+ G+G + E
Sbjct: 265 SSKESQEEFLENPWKDRTKAEEPSDLIGPEAPKTLTSQDDKPLNYGHALLPGEGAAMAEY 324
Query: 313 V 313
V
Sbjct: 325 V 325
Score = 45.1 bits (105), Expect = 9e-05
Identities = 57/207 (27%), Positives = 86/207 (41%), Gaps = 27/207 (13%)
Query: 80 SGAALPSRPASRAAPRPEASSP-PLPLEKARGGLSGPQGGRARGAMAHVGSRKRSRSRSR 138
SG+ P R AS + R +SS P P + AR P+G R+R S S SR
Sbjct: 5 SGSRSPDREASGSGGRRRSSSKSPKPSKSARS----PRGRRSR-----------SHSCSR 49
Query: 139 SRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSSSSSSSSSSS 198
S R + SRN S RS+ ++R R R S+ +S+SSS S
Sbjct: 50 SGDRNGLTHQLGGLSQGSRNQSY-----RSRSRSRSRERPSAPRGIPFASASSSVYYGSY 104
Query: 199 SSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGK-EKAEAQQVEAL----PGPSLDQWHRSA 253
S K DK R++ ++K+L ++ + + A +V L P P D+ H
Sbjct: 105 SRPYGSDKPWPSLLDKEREESLRQKRLSERERIGELGAPEVWGLSPKNPEPDSDE-HTPV 163
Query: 254 GEEEDGPVLTDEQKSRIQAMKPMTKEE 280
+EE T S + K ++ +
Sbjct: 164 EDEEPKKSTTSASTSEEEKKKKSSRSK 190
Score = 37.4 bits (85), Expect = 0.019
Identities = 29/132 (21%), Positives = 53/132 (40%), Gaps = 31/132 (23%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSS 188
S+KR + +S S+++ KK +D S S S S +
Sbjct: 193 SKKRRKKKS------SKRKHKKYSED-------------------------SDSDSDSET 221
Query: 189 SSSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRKKLKKKGKEKAEAQQVEALPGPSLDQ 248
SS + + + ++K+ K++ K+ KKK+ +K K+ ++ Q E L P D+
Sbjct: 222 DSSDEDNKRRAKKAKKKEKKKKHRSKKYKKKRSKKSRKESSDSSSKESQEEFLENPWKDR 281
Query: 249 WHRSAGEEEDGP 260
+ GP
Sbjct: 282 TKAEEPSDLIGP 293
>gi|91206454 hypothetical protein LOC257415 isoform 2 [Homo sapiens]
Length = 237
Score = 61.6 bits (148), Expect = 1e-09
Identities = 55/173 (31%), Positives = 81/173 (46%), Gaps = 32/173 (18%)
Query: 130 RKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSSSSSSS 189
+K S++ + + +E KK+ K + S S S + +Q+ ++ + S SSSSSSS
Sbjct: 42 KKGSKALAEFEEKMNENWKKELEKHREKLLSGSESSSKKRQRKKKEKKKSGRYSSSSSSS 101
Query: 190 SSSSSSSSSSSSSDGRKKRGKYKDKRRKKKKKRK-----------------KLKKKGKEK 232
S SSSSSS S D KK+G KRRKKKK R LKKK K K
Sbjct: 102 SDSSSSSSDSEDED--KKQG----KRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSK 155
Query: 233 AEAQQVEALPGPSLDQWHRSAGEEEDGPVLTD-----EQKSRIQAMKPMTKEE 280
++ + + G S + S ED P+ ++ E ++A K + EE
Sbjct: 156 DGTEKEKDIKGLSKKRKMYS----EDKPLSSESLSESEYIEEVRAKKKKSSEE 204
Score = 48.9 bits (115), Expect = 6e-06
Identities = 36/132 (27%), Positives = 56/132 (42%), Gaps = 20/132 (15%)
Query: 129 SRKRSRSRSRSRGRGSEKRKKKSRKDTSRNCSASTSQERSKQKARRRTRSSSSSSS---- 184
S S S + +G ++KKK+R S S S ++ SK +++ +S +
Sbjct: 105 SSSSSDSEDEDKKQGKRRKKKKNRSHKSSESSMSETESDSKDSLKKKKKSKDGTEKEKDI 164
Query: 185 ----------SSSSSSSSSSSSSSSSSSDGRKKRGKYKDKRRK------KKKKRKKLKKK 228
S SS S S S + R K+ K ++R K KKKK KK KK
Sbjct: 165 KGLSKKRKMYSEDKPLSSESLSESEYIEEVRAKKKKSSEEREKATEKTKKKKKHKKHSKK 224
Query: 229 GKEKAEAQQVEA 240
K+KA + ++
Sbjct: 225 KKKKAASSSPDS 236
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.307 0.124 0.345
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,800,770
Number of Sequences: 37866
Number of extensions: 827473
Number of successful extensions: 36310
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 1004
Number of HSP's successfully gapped in prelim test: 1170
Number of HSP's that attempted gapping in prelim test: 12361
Number of HSP's gapped (non-prelim): 10932
length of query: 338
length of database: 18,247,518
effective HSP length: 103
effective length of query: 235
effective length of database: 14,347,320
effective search space: 3371620200
effective search space used: 3371620200
T: 11
A: 40
X1: 16 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.6 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.