Search of human proteins with 4885443

Search of human proteins with 4885443

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4885443 potassium voltage-gated channel, Isk-related family,
member 3 [Homo sapiens]
         (103 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4885443 potassium voltage-gated channel, Isk-related family, ...   213   3e-56
gi|6912442 potassium voltage-gated channel, Isk-related family, ...    46   6e-06
gi|154448884 potassium voltage-gated channel, Isk-related family...    37   0.003
gi|189095241 potassium voltage-gated channel, Isk-related family...    37   0.004
gi|189095239 potassium voltage-gated channel, Isk-related family...    37   0.004
gi|189095237 potassium voltage-gated channel, Isk-related family...    37   0.004
gi|60218915 potassium voltage-gated channel, Isk-related family,...    37   0.004
gi|27436978 potassium voltage-gated channel, Isk-related family,...    32   0.082
gi|7657544 sodium channel, voltage gated, type VIII, alpha [Homo...    26   5.9  
gi|157694524 plexin D1 [Homo sapiens]                                  26   5.9  

>gi|4885443 potassium voltage-gated channel, Isk-related family,
           member 3 [Homo sapiens]
          Length = 103

 Score =  213 bits (541), Expect = 3e-56
 Identities = 103/103 (100%), Positives = 103/103 (100%)

Query: 1   METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY 60
           METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY
Sbjct: 1   METTNGTETWYESLHAVLKALNATLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMY 60

Query: 61  ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI 103
           ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI
Sbjct: 61  ILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKNRVSMI 103


>gi|6912442 potassium voltage-gated channel, Isk-related family,
          member 1-like [Homo sapiens]
          Length = 142

 Score = 46.2 bits (108), Expect = 6e-06
 Identities = 23/59 (38%), Positives = 32/59 (54%)

Query: 32 RPGPGLGPDNQTEERRASLPGRDDNSYMYILFVMFLFAVTVGSLILGYTRSRKVDKRSD 90
          RP  G+G        R     + D++Y+YIL +M  +A   G LIL YTRSRK+ +  D
Sbjct: 34 RPSMGMGVVPDPFVGREVTSAKGDDAYLYILLIMIFYACLAGGLILAYTRSRKLVEAKD 92


>gi|154448884 potassium voltage-gated channel, Isk-related family,
          member 4 [Homo sapiens]
          Length = 170

 Score = 37.0 bits (84), Expect = 0.003
 Identities = 20/62 (32%), Positives = 34/62 (54%), Gaps = 1/62 (1%)

Query: 35 PGLGPDNQTEERRASLPGRDD-NSYMYILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYH 93
          PG    +   E RA+  G  + N Y YIL VM  + + +  ++LGY +S++ +K+S    
Sbjct: 12 PGTAASSSPLESRAAGGGSGNGNEYFYILVVMSFYGIFLIGIMLGYMKSKRREKKSSLLL 71

Query: 94 VY 95
          +Y
Sbjct: 72 LY 73


>gi|189095241 potassium voltage-gated channel, Isk-related family,
          member 1 [Homo sapiens]
          Length = 129

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 14/40 (35%), Positives = 27/40 (67%)

Query: 59 MYILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKN 98
          +Y+L V+  F      ++L Y RS+K++  +DP++VYI++
Sbjct: 45 LYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIES 84


>gi|189095239 potassium voltage-gated channel, Isk-related family,
          member 1 [Homo sapiens]
          Length = 129

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 14/40 (35%), Positives = 27/40 (67%)

Query: 59 MYILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKN 98
          +Y+L V+  F      ++L Y RS+K++  +DP++VYI++
Sbjct: 45 LYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIES 84


>gi|189095237 potassium voltage-gated channel, Isk-related family,
          member 1 [Homo sapiens]
          Length = 129

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 14/40 (35%), Positives = 27/40 (67%)

Query: 59 MYILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKN 98
          +Y+L V+  F      ++L Y RS+K++  +DP++VYI++
Sbjct: 45 LYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIES 84


>gi|60218915 potassium voltage-gated channel, Isk-related family,
          member 1 [Homo sapiens]
          Length = 129

 Score = 36.6 bits (83), Expect = 0.004
 Identities = 14/40 (35%), Positives = 27/40 (67%)

Query: 59 MYILFVMFLFAVTVGSLILGYTRSRKVDKRSDPYHVYIKN 98
          +Y+L V+  F      ++L Y RS+K++  +DP++VYI++
Sbjct: 45 LYVLMVLGFFGFFTLGIMLSYIRSKKLEHSNDPFNVYIES 84


>gi|27436978 potassium voltage-gated channel, Isk-related family,
          member 2 [Homo sapiens]
          Length = 123

 Score = 32.3 bits (72), Expect = 0.082
 Identities = 18/60 (30%), Positives = 34/60 (56%), Gaps = 4/60 (6%)

Query: 41 NQTEERRASLPGRD-DNSYMYILFVMFL---FAVTVGSLILGYTRSRKVDKRSDPYHVYI 96
          N T E+ A     D +N Y  IL++M +   F+  + ++++   +S++ +  +DPYH YI
Sbjct: 29 NTTAEQEALQAKVDAENFYYVILYLMVMIGMFSFIIVAILVSTVKSKRREHSNDPYHQYI 88


>gi|7657544 sodium channel, voltage gated, type VIII, alpha [Homo
            sapiens]
          Length = 1980

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 10/17 (58%), Positives = 13/17 (76%)

Query: 51   PGRDDNSYMYILFVMFL 67
            P  +DN YMYI FV+F+
Sbjct: 1432 PKYEDNIYMYIYFVIFI 1448


>gi|157694524 plexin D1 [Homo sapiens]
          Length = 1925

 Score = 26.2 bits (56), Expect = 5.9
 Identities = 13/50 (26%), Positives = 24/50 (48%)

Query: 24  TLHSNLLCRPGPGLGPDNQTEERRASLPGRDDNSYMYILFVMFLFAVTVG 73
           T+   ++C  GP  GP +      AS  G+  + + Y+L ++     T+G
Sbjct: 942 TVSEEIVCVTGPAPGPLSGVVTVNASKEGKSRDRFSYVLPLVHSLEPTMG 991


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.320    0.136    0.406 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,136,632
Number of Sequences: 37866
Number of extensions: 160623
Number of successful extensions: 443
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 433
Number of HSP's gapped (non-prelim): 10
length of query: 103
length of database: 18,247,518
effective HSP length: 74
effective length of query: 29
effective length of database: 15,445,434
effective search space: 447917586
effective search space used: 447917586
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.