Search of human proteins with 4885397

Search of human proteins with 4885397

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4885397 hemoglobin, zeta [Homo sapiens]
         (142 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4885397 hemoglobin, zeta [Homo sapiens]                            282   8e-77
gi|4504347 alpha 1 globin [Homo sapiens]                              172   8e-44
gi|4504345 alpha 2 globin [Homo sapiens]                              172   8e-44
gi|4885395 theta 1 globin [Homo sapiens]                              148   1e-36
gi|51510893 hemoglobin mu chain [Homo sapiens]                        132   1e-31
gi|28302131 A-gamma globin [Homo sapiens]                             110   5e-25
gi|6715607 G-gamma globin [Homo sapiens]                              110   5e-25
gi|4885393 epsilon globin [Homo sapiens]                              107   3e-24
gi|4504351 delta globin [Homo sapiens]                                101   2e-22
gi|4504349 beta globin [Homo sapiens]                                  98   3e-21
gi|19549331 cytoglobin [Homo sapiens]                                  83   7e-17
gi|44955888 myoglobin [Homo sapiens]                                   70   8e-13
gi|44955885 myoglobin [Homo sapiens]                                   70   8e-13
gi|4885477 myoglobin [Homo sapiens]                                    70   8e-13

>gi|4885397 hemoglobin, zeta [Homo sapiens]
          Length = 142

 Score =  282 bits (721), Expect = 8e-77
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG 60
           MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG
Sbjct: 1   MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG 60

Query: 61  SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA 120
           SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA
Sbjct: 61  SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA 120

Query: 121 EAHAAWDKFLSVVSSVLTEKYR 142
           EAHAAWDKFLSVVSSVLTEKYR
Sbjct: 121 EAHAAWDKFLSVVSSVLTEKYR 142


>gi|4504347 alpha 1 globin [Homo sapiens]
          Length = 142

 Score =  172 bits (436), Expect = 8e-44
 Identities = 85/142 (59%), Positives = 104/142 (73%)

Query: 1   MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG 60
           M L+  ++T + + W K+   A   G E LER+FLS P TKTYFPHFDL  GSAQ++ HG
Sbjct: 1   MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG 60

Query: 61  SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA 120
            KV  A+ +AV  +DD+  ALS LS+LHA+ LRVDPVNFKLLSHCLLVTLAA  PA+FT 
Sbjct: 61  KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120

Query: 121 EAHAAWDKFLSVVSSVLTEKYR 142
             HA+ DKFL+ VS+VLT KYR
Sbjct: 121 AVHASLDKFLASVSTVLTSKYR 142


>gi|4504345 alpha 2 globin [Homo sapiens]
          Length = 142

 Score =  172 bits (436), Expect = 8e-44
 Identities = 85/142 (59%), Positives = 104/142 (73%)

Query: 1   MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG 60
           M L+  ++T + + W K+   A   G E LER+FLS P TKTYFPHFDL  GSAQ++ HG
Sbjct: 1   MVLSPADKTNVKAAWGKVGAHAGEYGAEALERMFLSFPTTKTYFPHFDLSHGSAQVKGHG 60

Query: 61  SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA 120
            KV  A+ +AV  +DD+  ALS LS+LHA+ LRVDPVNFKLLSHCLLVTLAA  PA+FT 
Sbjct: 61  KKVADALTNAVAHVDDMPNALSALSDLHAHKLRVDPVNFKLLSHCLLVTLAAHLPAEFTP 120

Query: 121 EAHAAWDKFLSVVSSVLTEKYR 142
             HA+ DKFL+ VS+VLT KYR
Sbjct: 121 AVHASLDKFLASVSTVLTSKYR 142


>gi|4885395 theta 1 globin [Homo sapiens]
          Length = 142

 Score =  148 bits (374), Expect = 1e-36
 Identities = 74/142 (52%), Positives = 96/142 (67%)

Query: 1   MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHG 60
           M+L+  +R ++ ++W K+ +      TE LER FL+ P TKTYF H DL PGS+Q+RAHG
Sbjct: 1   MALSAEDRALVRALWKKLGSNVGVYTTEALERTFLAFPATKTYFSHLDLSPGSSQVRAHG 60

Query: 61  SKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTA 120
            KV  A+  AV+ +DD+  ALS LS LHA  LRVDP +F+LL HCLLVTLA  +P DF+ 
Sbjct: 61  QKVADALSLAVERLDDLPHALSALSHLHACQLRVDPASFQLLGHCLLVTLARHYPGDFSP 120

Query: 121 EAHAAWDKFLSVVSSVLTEKYR 142
              A+ DKFLS V S L  +YR
Sbjct: 121 ALQASLDKFLSHVISALVSEYR 142


>gi|51510893 hemoglobin mu chain [Homo sapiens]
          Length = 141

 Score =  132 bits (331), Expect = 1e-31
 Identities = 67/140 (47%), Positives = 88/140 (62%)

Query: 3   LTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPGSAQLRAHGSK 62
           L+  ER  I  +W  I+      G E L RLF  +P TK YFPH      + QL +HG +
Sbjct: 2   LSAQERAQIAQVWDLIAGHEAQFGAELLLRLFTVYPSTKVYFPHLSACQDATQLLSHGQR 61

Query: 63  VVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPADFTAEA 122
           ++AAVG AV+ +D++  ALS L++LHA +LRVDP NF LL  C  V LA+    +FT + 
Sbjct: 62  MLAAVGAAVQHVDNLRAALSPLADLHALVLRVDPANFPLLIQCFHVVLASHLQDEFTVQM 121

Query: 123 HAAWDKFLSVVSSVLTEKYR 142
            AAWDKFL+ V+ VLTEKYR
Sbjct: 122 QAAWDKFLTGVAVVLTEKYR 141


>gi|28302131 A-gamma globin [Homo sapiens]
          Length = 147

 Score =  110 bits (274), Expect = 5e-25
 Identities = 56/144 (38%), Positives = 87/144 (60%), Gaps = 8/144 (5%)

Query: 4   TKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSAQLR 57
           T+ ++  I S+W K++ +    G ETL RL + +P T+ +F  F          G+ +++
Sbjct: 5   TEEDKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVK 62

Query: 58  AHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPAD 117
           AHG KV+ ++GDA K +DD+ G  ++LSELH   L VDP NFKLL + L+  LA  F  +
Sbjct: 63  AHGKKVLTSLGDATKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKE 122

Query: 118 FTAEAHAAWDKFLSVVSSVLTEKY 141
           FT E  A+W K ++ V+S L+ +Y
Sbjct: 123 FTPEVQASWQKMVTAVASALSSRY 146


>gi|6715607 G-gamma globin [Homo sapiens]
          Length = 147

 Score =  110 bits (274), Expect = 5e-25
 Identities = 56/144 (38%), Positives = 88/144 (61%), Gaps = 8/144 (5%)

Query: 4   TKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSAQLR 57
           T+ ++  I S+W K++ +    G ETL RL + +P T+ +F  F          G+ +++
Sbjct: 5   TEEDKATITSLWGKVNVE--DAGGETLGRLLVVYPWTQRFFDSFGNLSSASAIMGNPKVK 62

Query: 58  AHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPAD 117
           AHG KV+ ++GDA+K +DD+ G  ++LSELH   L VDP NFKLL + L+  LA  F  +
Sbjct: 63  AHGKKVLTSLGDAIKHLDDLKGTFAQLSELHCDKLHVDPENFKLLGNVLVTVLAIHFGKE 122

Query: 118 FTAEAHAAWDKFLSVVSSVLTEKY 141
           FT E  A+W K ++ V+S L+ +Y
Sbjct: 123 FTPEVQASWQKMVTGVASALSSRY 146


>gi|4885393 epsilon globin [Homo sapiens]
          Length = 147

 Score =  107 bits (267), Expect = 3e-24
 Identities = 56/144 (38%), Positives = 86/144 (59%), Gaps = 8/144 (5%)

Query: 4   TKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSAQLR 57
           T  E+  + S+W+K++ +    G E L RL + +P T+ +F  F          G+ +++
Sbjct: 5   TAEEKAAVTSLWSKMNVEE--AGGEALGRLLVVYPWTQRFFDSFGNLSSPSAILGNPKVK 62

Query: 58  AHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPAD 117
           AHG KV+ + GDA+K++D++  A +KLSELH   L VDP NFKLL + +++ LA  F  +
Sbjct: 63  AHGKKVLTSFGDAIKNMDNLKPAFAKLSELHCDKLHVDPENFKLLGNVMVIILATHFGKE 122

Query: 118 FTAEAHAAWDKFLSVVSSVLTEKY 141
           FT E  AAW K +S V+  L  KY
Sbjct: 123 FTPEVQAAWQKLVSAVAIALAHKY 146


>gi|4504351 delta globin [Homo sapiens]
          Length = 147

 Score =  101 bits (252), Expect = 2e-22
 Identities = 54/145 (37%), Positives = 85/145 (58%), Gaps = 8/145 (5%)

Query: 3   LTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSAQL 56
           LT  E+T + ++W K++   D +G E L RL + +P T+ +F  F      D   G+ ++
Sbjct: 4   LTPEEKTAVNALWGKVNV--DAVGGEALGRLLVVYPWTQRFFESFGDLSSPDAVMGNPKV 61

Query: 57  RAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPA 116
           +AHG KV+ A  D +  +D++ G  S+LSELH   L VDP NF+LL + L+  LA  F  
Sbjct: 62  KAHGKKVLGAFSDGLAHLDNLKGTFSQLSELHCDKLHVDPENFRLLGNVLVCVLARNFGK 121

Query: 117 DFTAEAHAAWDKFLSVVSSVLTEKY 141
           +FT +  AA+ K ++ V++ L  KY
Sbjct: 122 EFTPQMQAAYQKVVAGVANALAHKY 146


>gi|4504349 beta globin [Homo sapiens]
          Length = 147

 Score = 97.8 bits (242), Expect = 3e-21
 Identities = 52/145 (35%), Positives = 83/145 (57%), Gaps = 8/145 (5%)

Query: 3   LTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSAQL 56
           LT  E++ + ++W K++   D +G E L RL + +P T+ +F  F      D   G+ ++
Sbjct: 4   LTPEEKSAVTALWGKVNV--DEVGGEALGRLLVVYPWTQRFFESFGDLSTPDAVMGNPKV 61

Query: 57  RAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARFPA 116
           +AHG KV+ A  D +  +D++ G  + LSELH   L VDP NF+LL + L+  LA  F  
Sbjct: 62  KAHGKKVLGAFSDGLAHLDNLKGTFATLSELHCDKLHVDPENFRLLGNVLVCVLAHHFGK 121

Query: 117 DFTAEAHAAWDKFLSVVSSVLTEKY 141
           +FT    AA+ K ++ V++ L  KY
Sbjct: 122 EFTPPVQAAYQKVVAGVANALAHKY 146


>gi|19549331 cytoglobin [Homo sapiens]
          Length = 190

 Score = 83.2 bits (204), Expect = 7e-17
 Identities = 46/149 (30%), Positives = 76/149 (51%), Gaps = 9/149 (6%)

Query: 3   LTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHFDLHPG------SAQL 56
           L++ ER  + +MWA++    + +G   L R F++ P  K YF  F           S QL
Sbjct: 19  LSEAERKAVQAMWARLYANCEDVGVAILVRFFVNFPSAKQYFSQFKHMEDPLEMERSPQL 78

Query: 57  RAHGSKVVAAVGDAVKSIDD---IGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAAR 113
           R H  +V+ A+   V+++ D   +   L+ + + HA   +V+PV FK+LS  +L  +A  
Sbjct: 79  RKHACRVMGALNTVVENLHDPDKVSSVLALVGKAHALKHKVEPVYFKILSGVILEVVAEE 138

Query: 114 FPADFTAEAHAAWDKFLSVVSSVLTEKYR 142
           F +DF  E   AW K   ++ S +T  Y+
Sbjct: 139 FASDFPPETQRAWAKLRGLIYSHVTAAYK 167


>gi|44955888 myoglobin [Homo sapiens]
          Length = 154

 Score = 69.7 bits (169), Expect = 8e-13
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 1   MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSA 54
           M L+  E  +++++W K+       G E L RLF  HP+T   F  F      D    S 
Sbjct: 1   MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60

Query: 55  QLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARF 114
            L+ HG+ V+ A+G  +K        +  L++ HA   ++     + +S C++  L ++ 
Sbjct: 61  DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120

Query: 115 PADFTAEAHAAWDKFLSVVSSVLTEKYR 142
           P DF A+A  A +K L +    +   Y+
Sbjct: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148


>gi|44955885 myoglobin [Homo sapiens]
          Length = 154

 Score = 69.7 bits (169), Expect = 8e-13
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 1   MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSA 54
           M L+  E  +++++W K+       G E L RLF  HP+T   F  F      D    S 
Sbjct: 1   MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60

Query: 55  QLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARF 114
            L+ HG+ V+ A+G  +K        +  L++ HA   ++     + +S C++  L ++ 
Sbjct: 61  DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120

Query: 115 PADFTAEAHAAWDKFLSVVSSVLTEKYR 142
           P DF A+A  A +K L +    +   Y+
Sbjct: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148


>gi|4885477 myoglobin [Homo sapiens]
          Length = 154

 Score = 69.7 bits (169), Expect = 8e-13
 Identities = 40/148 (27%), Positives = 69/148 (46%), Gaps = 6/148 (4%)

Query: 1   MSLTKTERTIIVSMWAKISTQADTIGTETLERLFLSHPQTKTYFPHF------DLHPGSA 54
           M L+  E  +++++W K+       G E L RLF  HP+T   F  F      D    S 
Sbjct: 1   MGLSDGEWQLVLNVWGKVEADIPGHGQEVLIRLFKGHPETLEKFDKFKHLKSEDEMKASE 60

Query: 55  QLRAHGSKVVAAVGDAVKSIDDIGGALSKLSELHAYILRVDPVNFKLLSHCLLVTLAARF 114
            L+ HG+ V+ A+G  +K        +  L++ HA   ++     + +S C++  L ++ 
Sbjct: 61  DLKKHGATVLTALGGILKKKGHHEAEIKPLAQSHATKHKIPVKYLEFISECIIQVLQSKH 120

Query: 115 PADFTAEAHAAWDKFLSVVSSVLTEKYR 142
           P DF A+A  A +K L +    +   Y+
Sbjct: 121 PGDFGADAQGAMNKALELFRKDMASNYK 148


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.132    0.385 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,639,890
Number of Sequences: 37866
Number of extensions: 158127
Number of successful extensions: 369
Number of sequences better than 10.0: 14
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 0
Number of HSP's that attempted gapping in prelim test: 350
Number of HSP's gapped (non-prelim): 14
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.