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Search of human proteins with 4885181
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4885181 defensin, beta 1 preproprotein [Homo sapiens]
(68 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4885181 defensin, beta 1 preproprotein [Homo sapiens] 149 6e-37
gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo ... 34 0.022
gi|239743453 PREDICTED: hypothetical protein XP_002342852 [Homo ... 33 0.049
gi|4826692 defensin, beta 4 precursor [Homo sapiens] 33 0.049
gi|62988324 tenascin N [Homo sapiens] 28 2.0
gi|66346695 fibrillin 2 precursor [Homo sapiens] 27 2.7
gi|224282178 GDNF family receptor alpha 1 isoform b preproprotei... 27 3.5
gi|22035692 GDNF family receptor alpha 1 isoform b preproprotein... 27 3.5
gi|4885269 GDNF family receptor alpha 1 isoform a preproprotein ... 27 3.5
gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo ... 27 3.5
gi|14042925 ring finger protein 26 [Homo sapiens] 27 3.5
gi|4507065 secretory leukocyte peptidase inhibitor precursor [Ho... 26 5.9
gi|126012573 low density lipoprotein-related protein 2 [Homo sap... 26 5.9
>gi|4885181 defensin, beta 1 preproprotein [Homo sapiens]
Length = 68
Score = 149 bits (375), Expect = 6e-37
Identities = 68/68 (100%), Positives = 68/68 (100%)
Query: 1 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSACPIFTKIQGTCY 60
MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSACPIFTKIQGTCY
Sbjct: 1 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSACPIFTKIQGTCY 60
Query: 61 RGKAKCCK 68
RGKAKCCK
Sbjct: 61 RGKAKCCK 68
>gi|239742274 PREDICTED: hypothetical protein XP_002342470 [Homo
sapiens]
Length = 87
Score = 34.3 bits (77), Expect = 0.022
Identities = 24/63 (38%), Positives = 29/63 (46%), Gaps = 4/63 (6%)
Query: 6 LLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSACPIFTKIQGTCYRGKAK 65
L L L LL S + S GN GLG H C++ G C C + G C R K K
Sbjct: 3 LHLLLLILLFSILLSPGN-KGGLGPAEGH--CLNLSGVCRRDVCKVVEDQIGAC-RRKMK 58
Query: 66 CCK 68
CC+
Sbjct: 59 CCR 61
>gi|239743453 PREDICTED: hypothetical protein XP_002342852 [Homo
sapiens]
Length = 64
Score = 33.1 bits (74), Expect = 0.049
Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 1 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSACPIFTKIQGTCY 60
MR YLL L + L + G+G D C+ SG C CP K GTC
Sbjct: 1 MRVLYLLFSFLFIFLMPLPG---VFGGIG---DPVTCLKSGAICHPVFCPRRYKQIGTCG 54
Query: 61 RGKAKCCK 68
KCCK
Sbjct: 55 LPGTKCCK 62
>gi|4826692 defensin, beta 4 precursor [Homo sapiens]
Length = 64
Score = 33.1 bits (74), Expect = 0.049
Identities = 24/68 (35%), Positives = 28/68 (41%), Gaps = 6/68 (8%)
Query: 1 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSACPIFTKIQGTCY 60
MR YLL L + L + G+G D C+ SG C CP K GTC
Sbjct: 1 MRVLYLLFSFLFIFLMPLPG---VFGGIG---DPVTCLKSGAICHPVFCPRRYKQIGTCG 54
Query: 61 RGKAKCCK 68
KCCK
Sbjct: 55 LPGTKCCK 62
>gi|62988324 tenascin N [Homo sapiens]
Length = 1299
Score = 27.7 bits (60), Expect = 2.0
Identities = 16/47 (34%), Positives = 17/47 (36%), Gaps = 9/47 (19%)
Query: 29 GHRSDHYNCVSS---------GGQCLYSACPIFTKIQGTCYRGKAKC 66
G S H CV G C Y ACP G C RG +C
Sbjct: 173 GACSGHGRCVDGRCLCHEPYVGADCGYPACPENCSGHGECVRGVCQC 219
>gi|66346695 fibrillin 2 precursor [Homo sapiens]
Length = 2912
Score = 27.3 bits (59), Expect = 2.7
Identities = 14/40 (35%), Positives = 18/40 (45%)
Query: 10 TLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSAC 49
TLC + A+ G+ LTG D C + G C Y C
Sbjct: 1050 TLCPRGAGFANRGDVLTGRPFYKDINECKAFPGMCTYGKC 1089
>gi|224282178 GDNF family receptor alpha 1 isoform b preproprotein
[Homo sapiens]
Length = 460
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 1 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCL-YSACPIFTKIQGTC 59
+ T Y L L LLLS SGG D +CV + QCL +C + C
Sbjct: 3 LATLYFALPLLDLLLSAEVSGG----------DRLDCVKASDQCLKEQSCSTKYRTLRQC 52
Query: 60 YRGK 63
GK
Sbjct: 53 VAGK 56
>gi|22035692 GDNF family receptor alpha 1 isoform b preproprotein
[Homo sapiens]
Length = 460
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 1 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCL-YSACPIFTKIQGTC 59
+ T Y L L LLLS SGG D +CV + QCL +C + C
Sbjct: 3 LATLYFALPLLDLLLSAEVSGG----------DRLDCVKASDQCLKEQSCSTKYRTLRQC 52
Query: 60 YRGK 63
GK
Sbjct: 53 VAGK 56
>gi|4885269 GDNF family receptor alpha 1 isoform a preproprotein
[Homo sapiens]
Length = 465
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/64 (32%), Positives = 26/64 (40%), Gaps = 11/64 (17%)
Query: 1 MRTSYLLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCL-YSACPIFTKIQGTC 59
+ T Y L L LLLS SGG D +CV + QCL +C + C
Sbjct: 3 LATLYFALPLLDLLLSAEVSGG----------DRLDCVKASDQCLKEQSCSTKYRTLRQC 52
Query: 60 YRGK 63
GK
Sbjct: 53 VAGK 56
>gi|239744548 PREDICTED: hypothetical protein XP_002343194 [Homo
sapiens]
Length = 192
Score = 26.9 bits (58), Expect = 3.5
Identities = 19/63 (30%), Positives = 26/63 (41%), Gaps = 9/63 (14%)
Query: 6 LLLFTLCLLLSEMASGGNFLTGLGHRSDHYNCVSSGGQCLYSACPIFTKIQGTCYRGKAK 65
L+L +LLS + LG H C+S G C C + G C R + K
Sbjct: 71 LILLLFSILLSPVRGA------LGPAEVH--CLSLSGVCRRDVCKVVEDQIGAC-RRRMK 121
Query: 66 CCK 68
CC+
Sbjct: 122 CCR 124
>gi|14042925 ring finger protein 26 [Homo sapiens]
Length = 433
Score = 26.9 bits (58), Expect = 3.5
Identities = 21/57 (36%), Positives = 22/57 (38%), Gaps = 13/57 (22%)
Query: 8 LFTLCLLLSEMASGGNFLTGLGHRSDH-------------YNCVSSGGQCLYSACPI 51
L LC LL SG L LGH + H N VSSG L AC I
Sbjct: 80 LQALCTLLYSCCSGLESLKLLGHLASHGALRSREILHRGVLNVVSSGHALLRQACDI 136
>gi|4507065 secretory leukocyte peptidase inhibitor precursor [Homo
sapiens]
Length = 132
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/31 (41%), Positives = 16/31 (51%), Gaps = 1/31 (3%)
Query: 37 CVSSGGQCLYSACPIFTKIQGTCYRGKAKCC 67
C + GQCL P F ++ G C R KCC
Sbjct: 89 CPVTYGQCLMLNPPNFCEMDGQCKR-DLKCC 118
>gi|126012573 low density lipoprotein-related protein 2 [Homo
sapiens]
Length = 4655
Score = 26.2 bits (56), Expect = 5.9
Identities = 13/40 (32%), Positives = 14/40 (35%), Gaps = 3/40 (7%)
Query: 30 HRSDHYNCVSSGGQ---CLYSACPIFTKIQGTCYRGKAKC 66
+R DH G C Y C T G CY KC
Sbjct: 125 YRCDHVRDCPDGADENDCQYPTCEQLTCDNGACYNTSQKC 164
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.140 0.467
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 2,702,292
Number of Sequences: 37866
Number of extensions: 96144
Number of successful extensions: 285
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 279
Number of HSP's gapped (non-prelim): 14
length of query: 68
length of database: 18,247,518
effective HSP length: 41
effective length of query: 27
effective length of database: 16,695,012
effective search space: 450765324
effective search space used: 450765324
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.