Search of human proteins with 4827036

Search of human proteins with 4827036

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4827036 peptidoglycan recognition protein 1 [Homo sapiens]
         (196 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4827036 peptidoglycan recognition protein 1 [Homo sapiens]         418   e-117
gi|16418405 peptidoglycan recognition protein 3 precursor [Homo ...   172   2e-43
gi|56550073 peptidoglycan recognition protein-I-beta precursor [...   162   2e-40
gi|156616294 peptidoglycan recognition protein 2 precursor [Homo...   135   2e-32
gi|8923444 nucleolar protein family A, member 2 isoform a [Homo ...    31   0.59 
gi|238859658 LIM and senescent cell antigen-like domains 2 isofo...    29   2.9  
gi|238776788 LIM and senescent cell antigen-like domains 2 isofo...    29   2.9  
gi|238776786 LIM and senescent cell antigen-like domains 2 isofo...    29   2.9  
gi|40804748 LIM and senescent cell antigen-like domains 2 isofor...    29   2.9  
gi|239757282 PREDICTED: similar to Fc fragment of IgG binding pr...    29   2.9  
gi|13518026 LIM and senescent cell antigen-like domains 1 [Homo ...    29   2.9  
gi|186928844 Cdc42 GTPase-activating protein [Homo sapiens]            29   2.9  
gi|4505121 methyl-CpG binding domain protein 4 [Homo sapiens]          28   6.5  
gi|239742474 PREDICTED: hypothetical protein [Homo sapiens]            27   8.5  
gi|40217817 slit and trk like 1 protein [Homo sapiens]                 27   8.5  
gi|117190342 PHD finger protein 2 [Homo sapiens]                       27   8.5  

>gi|4827036 peptidoglycan recognition protein 1 [Homo sapiens]
          Length = 196

 Score =  418 bits (1074), Expect = e-117
 Identities = 196/196 (100%), Positives = 196/196 (100%)

Query: 1   MSRRSMLLAWALPSLLRLGAAQETEDPACCSPIVPRNEWKALASECAQHLSLPLRYVVVS 60
           MSRRSMLLAWALPSLLRLGAAQETEDPACCSPIVPRNEWKALASECAQHLSLPLRYVVVS
Sbjct: 1   MSRRSMLLAWALPSLLRLGAAQETEDPACCSPIVPRNEWKALASECAQHLSLPLRYVVVS 60

Query: 61  HTAGSSCNTPASCQQQARNVQHYHMKTLGWCDVGYNFLIGEDGLVYEGRGWNFTGAHSGH 120
           HTAGSSCNTPASCQQQARNVQHYHMKTLGWCDVGYNFLIGEDGLVYEGRGWNFTGAHSGH
Sbjct: 61  HTAGSSCNTPASCQQQARNVQHYHMKTLGWCDVGYNFLIGEDGLVYEGRGWNFTGAHSGH 120

Query: 121 LWNPMSIGISFMGNYMDRVPTPQAIRAAQGLLACGVAQGALRSNYVLKGHRDVQRTLSPG 180
           LWNPMSIGISFMGNYMDRVPTPQAIRAAQGLLACGVAQGALRSNYVLKGHRDVQRTLSPG
Sbjct: 121 LWNPMSIGISFMGNYMDRVPTPQAIRAAQGLLACGVAQGALRSNYVLKGHRDVQRTLSPG 180

Query: 181 NQLYHLIQNWPHYRSP 196
           NQLYHLIQNWPHYRSP
Sbjct: 181 NQLYHLIQNWPHYRSP 196


>gi|16418405 peptidoglycan recognition protein 3 precursor [Homo
           sapiens]
          Length = 341

 Score =  172 bits (435), Expect = 2e-43
 Identities = 77/186 (41%), Positives = 120/186 (64%), Gaps = 6/186 (3%)

Query: 13  PSLLRLGAAQETEDPAC----CSPIVPRNEWKALASECAQHLSLPLRYVVVSHTAGSSCN 68
           P LL+     + + P      C  I+ R+ W+A  + C + ++LP +YV++ HTAG+SC 
Sbjct: 157 PLLLKEETCLDPQHPVMPRKVCPNIIKRSAWEARETHCPK-MNLPAKYVIIIHTAGTSCT 215

Query: 69  TPASCQQQARNVQHYHMKTLGWCDVGYNFLIGEDGLVYEGRGWNFTGAHSGHLWNPMSIG 128
               CQ   RN+Q +HM T  +CD+GY+FL+G+DG VYEG GW+  G+H+ + +N +++G
Sbjct: 216 VSTDCQTVVRNIQSFHMDTRNFCDIGYHFLVGQDGGVYEGVGWHIQGSHT-YGFNDIALG 274

Query: 129 ISFMGNYMDRVPTPQAIRAAQGLLACGVAQGALRSNYVLKGHRDVQRTLSPGNQLYHLIQ 188
           I+F+G ++++ P   A+ AAQ L+ C V +G L  NY+L GH DV   LSPG  LY++I 
Sbjct: 275 IAFIGYFVEKPPNAAALEAAQDLIQCAVVEGYLTPNYLLMGHSDVVNILSPGQALYNIIS 334

Query: 189 NWPHYR 194
            WPH++
Sbjct: 335 TWPHFK 340



 Score =  124 bits (311), Expect = 5e-29
 Identities = 56/134 (41%), Positives = 81/134 (60%), Gaps = 1/134 (0%)

Query: 33  IVPRNEWKALASECAQHLSLPLRYVVVSHTAGSSCNTPASCQQQARNVQHYHMKTLGWCD 92
           IV R EW A    C   L+LP+ Y++     G  C   + C Q  R +Q + + T+GWCD
Sbjct: 23  IVSRKEWGARPLACRALLTLPVAYIITDQLPGMQCQQQSVCSQMLRGLQSHSVYTIGWCD 82

Query: 93  VGYNFLIGEDGLVYEGRGWNFTGAHSGHLWNPMSIGISFMGNYMDRVPTPQAIRAAQGLL 152
           V YNFL+G+DG VYEG GWN  G H+   +N +S+GI+F GN +   P+P A+ AA+GL+
Sbjct: 83  VAYNFLVGDDGRVYEGVGWNIQGLHT-QGYNNISLGIAFFGNKIGSSPSPAALSAAEGLI 141

Query: 153 ACGVAQGALRSNYV 166
           +  + +G L   Y+
Sbjct: 142 SYAIQKGHLSPRYI 155


>gi|56550073 peptidoglycan recognition protein-I-beta precursor
           [Homo sapiens]
          Length = 373

 Score =  162 bits (409), Expect = 2e-40
 Identities = 74/177 (41%), Positives = 112/177 (63%), Gaps = 2/177 (1%)

Query: 18  LGAAQETEDPACCSPIVPRNEWKALASECAQHLSLPLRYVVVSHTAGSSCNTPASCQQQA 77
           L   Q+T     C  +VPR+ W A  + C + ++LP +Y ++ HTAG +CN    C+   
Sbjct: 198 LAPRQKTSLKKACPGVVPRSVWGARETHCPR-MTLPAKYGIIIHTAGRTCNISDECRLLV 256

Query: 78  RNVQHYHMKTLGWCDVGYNFLIGEDGLVYEGRGWNFTGAHSGHLWNPMSIGISFMGNYMD 137
           R++Q +++  L  CD+GYNFL+G+DG +YEG GWN  G+ S   ++ +++GI+FMG +  
Sbjct: 257 RDIQSFYIDRLKSCDIGYNFLVGQDGAIYEGVGWNVQGS-STPGYDDIALGITFMGTFTG 315

Query: 138 RVPTPQAIRAAQGLLACGVAQGALRSNYVLKGHRDVQRTLSPGNQLYHLIQNWPHYR 194
             P   A+ AAQ L+ C + +G L  NY+L GH DV RTLSPG  LY++I  WPH++
Sbjct: 316 IPPNAAALEAAQDLIQCAMVKGYLTPNYLLVGHSDVARTLSPGQALYNIISTWPHFK 372



 Score =  110 bits (276), Expect = 6e-25
 Identities = 54/140 (38%), Positives = 77/140 (55%), Gaps = 1/140 (0%)

Query: 27  PACCSPIVPRNEWKALASECAQHLSLPLRYVVVSHTAGSSCNTPASCQQQARNVQHYHMK 86
           P   S  V R  W A A  C+  L+ P+  +V+ H  G  C+    C Q+ R +Q +H+ 
Sbjct: 49  PTDVSTTVSRKAWGAEAVGCSIQLTTPVNVLVIHHVPGLECHDQTVCSQRLRELQAHHVH 108

Query: 87  TLGWCDVGYNFLIGEDGLVYEGRGWNFTGAHSGHLWNPMSIGISFMGNYMDRVPTPQAIR 146
               CDV YNFL+G+DG VYEG GWN  G H+   +N +S+G +F G      P+P A+ 
Sbjct: 109 NNSGCDVAYNFLVGDDGRVYEGVGWNIQGVHT-QGYNNISLGFAFFGTKKGHSPSPAALS 167

Query: 147 AAQGLLACGVAQGALRSNYV 166
           A + L+   V +G L S+YV
Sbjct: 168 AMENLITYAVQKGHLSSSYV 187


>gi|156616294 peptidoglycan recognition protein 2 precursor [Homo
           sapiens]
          Length = 576

 Score =  135 bits (340), Expect = 2e-32
 Identities = 70/169 (41%), Positives = 95/169 (56%), Gaps = 7/169 (4%)

Query: 30  CSPIVPRNEWKALASECAQHL-SLPLRYVVVSHT--AGSSCNTPASCQQQARNVQHYHMK 86
           C  I PR  W A        L  LPL ++ V HT      C     C    R++Q YH  
Sbjct: 379 CPAIHPRCRWGAAPYRGRPKLLQLPLGFLYVHHTYVPAPPCTDFTRCAANMRSMQRYHQD 438

Query: 87  TLGWCDVGYNFLIGEDGLVYEGRGWNFTGAHS-GHLWNPMSIGISFMGNYMDRVPTPQAI 145
           T GW D+GY+F++G DG VYEGRGW++ GAH+ GH  N    G++ +GNY   +PT  A+
Sbjct: 439 TQGWGDIGYSFVVGSDGYVYEGRGWHWVGAHTLGH--NSRGFGVAIVGNYTAALPTEAAL 496

Query: 146 RAAQGLL-ACGVAQGALRSNYVLKGHRDVQRTLSPGNQLYHLIQNWPHY 193
           R  +  L +C V  G LR +Y L GHR + RT  PG+ L+ L++ WPH+
Sbjct: 497 RTVRDTLPSCAVRAGLLRPDYALLGHRQLVRTDCPGDALFDLLRTWPHF 545


>gi|8923444 nucleolar protein family A, member 2 isoform a [Homo
           sapiens]
          Length = 153

 Score = 31.2 bits (69), Expect = 0.59
 Identities = 16/44 (36%), Positives = 24/44 (54%), Gaps = 1/44 (2%)

Query: 12  LPSLLRLGAAQETEDPACCSPIVPRNEWKALASECAQHL-SLPL 54
           +PS   LGAA  ++ P C   + P  E++    EC + + SLPL
Sbjct: 108 IPSKTDLGAAAGSKRPTCVIMVKPHEEYQEAYDECLEEVQSLPL 151


>gi|238859658 LIM and senescent cell antigen-like domains 2 isoform
           1 [Homo sapiens]
          Length = 363

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 71  ASCQQQARNVQHYHMKTLGWCDVGYNFLIGE 101
           A C++     +HY  K L +C+  YN L G+
Sbjct: 247 AKCEKPFLGHRHYEKKGLAYCETHYNQLFGD 277


>gi|238776788 LIM and senescent cell antigen-like domains 2 isoform
           5 [Homo sapiens]
          Length = 336

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 71  ASCQQQARNVQHYHMKTLGWCDVGYNFLIGE 101
           A C++     +HY  K L +C+  YN L G+
Sbjct: 220 AKCEKPFLGHRHYEKKGLAYCETHYNQLFGD 250


>gi|238776786 LIM and senescent cell antigen-like domains 2 isoform
           3 [Homo sapiens]
          Length = 341

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 71  ASCQQQARNVQHYHMKTLGWCDVGYNFLIGE 101
           A C++     +HY  K L +C+  YN L G+
Sbjct: 225 AKCEKPFLGHRHYEKKGLAYCETHYNQLFGD 255


>gi|40804748 LIM and senescent cell antigen-like domains 2 isoform 2
           [Homo sapiens]
          Length = 365

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 71  ASCQQQARNVQHYHMKTLGWCDVGYNFLIGE 101
           A C++     +HY  K L +C+  YN L G+
Sbjct: 249 AKCEKPFLGHRHYEKKGLAYCETHYNQLFGD 279


>gi|239757282 PREDICTED: similar to Fc fragment of IgG binding
           protein [Homo sapiens]
          Length = 1403

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 23/113 (20%), Positives = 45/113 (39%), Gaps = 15/113 (13%)

Query: 28  ACCSPIVPRNEWKALASECAQHLSLPLRYVV----VSHTAGSSCNTPASCQQQARN---V 80
           AC +P +P  +W  +      +   PL+ ++         G +C    +C++Q      +
Sbjct: 9   ACSNPQIPGTDWVDMEGAAMLYNGQPLKVLLPLLSPDPCHGVTCRPQETCKEQGGQGVCL 68

Query: 81  QHYHMKTLGWCDVGYNFLIGEDGLVYEGRGWNFTGAHSGHLWNPMSIGISFMG 133
            +Y      W D  Y+         ++GR ++F G  +  L     +G+S  G
Sbjct: 69  PNYEATCWLWGDPHYH--------SFDGRKFDFQGTCNYVLATTGCLGVSTQG 113


>gi|13518026 LIM and senescent cell antigen-like domains 1 [Homo
           sapiens]
          Length = 325

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 11/31 (35%), Positives = 17/31 (54%)

Query: 71  ASCQQQARNVQHYHMKTLGWCDVGYNFLIGE 101
           A C++     +HY  K L +C+  YN L G+
Sbjct: 220 AKCEKPFLGHRHYERKGLAYCETHYNQLFGD 250


>gi|186928844 Cdc42 GTPase-activating protein [Homo sapiens]
          Length = 1444

 Score = 28.9 bits (63), Expect = 2.9
 Identities = 16/49 (32%), Positives = 24/49 (48%)

Query: 35  PRNEWKALASECAQHLSLPLRYVVVSHTAGSSCNTPASCQQQARNVQHY 83
           PRN+ KAL       +S+PLR   V  T  + C TP    Q   +++ +
Sbjct: 477 PRNQRKALNISEPFAVSVPLRVSAVISTNSTPCRTPPKELQSLSSLEEF 525


>gi|4505121 methyl-CpG binding domain protein 4 [Homo sapiens]
          Length = 580

 Score = 27.7 bits (60), Expect = 6.5
 Identities = 19/67 (28%), Positives = 26/67 (38%), Gaps = 3/67 (4%)

Query: 43  ASECAQHLSLPLRYVVVSHTAGSSCNTPASCQQQARNVQHYHMKTLGWCDVGYNFLIGED 102
           +SEC   L  P+       TAG+ C     C  +    Q    KT G  DV   + I   
Sbjct: 58  SSECNPLLQEPIASAQFGATAGTECRKSVPCGWERVVKQRLFGKTAGRFDV---YFISPQ 114

Query: 103 GLVYEGR 109
           GL +  +
Sbjct: 115 GLKFRSK 121


>gi|239742474 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 589

 Score = 27.3 bits (59), Expect = 8.5
 Identities = 9/22 (40%), Positives = 15/22 (68%)

Query: 107 EGRGWNFTGAHSGHLWNPMSIG 128
           +G  W   G+H+GH+ +P +IG
Sbjct: 413 QGGAWTAEGSHAGHIPDPPAIG 434


>gi|40217817 slit and trk like 1 protein [Homo sapiens]
          Length = 696

 Score = 27.3 bits (59), Expect = 8.5
 Identities = 12/36 (33%), Positives = 19/36 (52%)

Query: 151 LLACGVAQGALRSNYVLKGHRDVQRTLSPGNQLYHL 186
           + +C   +G L  +   KG   +QR  +P +Q YHL
Sbjct: 28  ICSCNEIEGDLHVDCEKKGFTSLQRFTAPTSQFYHL 63


>gi|117190342 PHD finger protein 2 [Homo sapiens]
          Length = 1096

 Score = 27.3 bits (59), Expect = 8.5
 Identities = 20/61 (32%), Positives = 29/61 (47%), Gaps = 2/61 (3%)

Query: 113  FTGAHSGHLWNPMSIGISFMGNYMDRVPTPQAIRAAQG-LLACGVAQGALRSNYVLKGHR 171
            FTGA +G    PM+ G+ F+        +P    AA+G     G+A    R   +LK HR
Sbjct: 1032 FTGAQAGRTSQPMAPGV-FLTQRRPSASSPNNNTAAKGKRTKKGMATAKQRLGKILKIHR 1090

Query: 172  D 172
            +
Sbjct: 1091 N 1091


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.134    0.444 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 8,240,009
Number of Sequences: 37866
Number of extensions: 359417
Number of successful extensions: 773
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 751
Number of HSP's gapped (non-prelim): 18
length of query: 196
length of database: 18,247,518
effective HSP length: 97
effective length of query: 99
effective length of database: 14,574,516
effective search space: 1442877084
effective search space used: 1442877084
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.