Search of human proteins with 4826988

Search of human proteins with 4826988

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4826988 ribosomal protein L3-like [Homo sapiens]
         (407 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4826988 ribosomal protein L3-like [Homo sapiens]                   838   0.0  
gi|4506649 ribosomal protein L3 isoform a [Homo sapiens]              666   0.0  
gi|76496472 ribosomal protein L3 isoform b [Homo sapiens]             560   e-160
gi|169215858 PREDICTED: similar to ribosomal protein L3, partial...   184   1e-46
gi|6005862 mitochondrial ribosomal protein L3 [Homo sapiens]           41   0.002
gi|110578649 cache domain containing 1 [Homo sapiens]                  37   0.042
gi|222418570 hypothetical protein LOC728591 isoform b [Homo sapi...    31   1.8  
gi|222418567 hypothetical protein LOC728591 isoform b [Homo sapi...    31   1.8  
gi|49355778 inter-alpha trypsin inhibitor heavy chain precursor ...    30   3.0  
gi|153945780 inter-alpha trypsin inhibitor heavy chain precursor...    30   3.0  
gi|153945711 inter-alpha trypsin inhibitor heavy chain precursor...    30   3.0  
gi|222418572 hypothetical protein LOC728591 isoform c [Homo sapi...    30   3.9  
gi|20336726 ceramide kinase [Homo sapiens]                             29   6.7  

>gi|4826988 ribosomal protein L3-like [Homo sapiens]
          Length = 407

 Score =  838 bits (2164), Expect = 0.0
 Identities = 407/407 (100%), Positives = 407/407 (100%)

Query: 1   MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
           MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV
Sbjct: 1   MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60

Query: 61  HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
           HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK
Sbjct: 61  HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120

Query: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
           DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI
Sbjct: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180

Query: 181 MEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL 240
           MEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL
Sbjct: 181 MEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL 240

Query: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVK 300
           PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVK
Sbjct: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVK 300

Query: 301 NNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAV 360
           NNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAV
Sbjct: 301 NNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAV 360

Query: 361 ENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKETPETSGDL 407
           ENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKETPETSGDL
Sbjct: 361 ENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKKHLEKETPETSGDL 407


>gi|4506649 ribosomal protein L3 isoform a [Homo sapiens]
          Length = 403

 Score =  666 bits (1719), Expect = 0.0
 Identities = 311/394 (78%), Positives = 359/394 (91%)

Query: 1   MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
           MSHRKFSAPRHG LGFLP KRS RHRGKVK++P+DDPS+PVHLTAFLGYKAGMTH +REV
Sbjct: 1   MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60

Query: 61  HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
            RPG K++K+E VEAVTIVETPP+VVVG+VGYV TPRGLR+FKT+FAEH+SDEC+RRFYK
Sbjct: 61  DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120

Query: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
           +WHKSKKKAFTK CK+W+D DGKKQL+KDF++MKKYC+VIRVI HTQM+LLP RQKKAH+
Sbjct: 121 NWHKSKKKAFTKYCKKWQDEDGKKQLEKDFSSMKKYCQVIRVIAHTQMRLLPLRQKKAHL 180

Query: 181 MEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL 240
           MEIQ+NGGTVAEK+ WA+ RLE+QVPV+ VF Q E+IDVI VTKG+G KGVTSRWHTKKL
Sbjct: 181 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 240

Query: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVK 300
           PRKTH+GLRKVACIGAWHPARV  S+ARAGQKGYHHRTE+NKKI++IG+G  ++DGKL+K
Sbjct: 241 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 300

Query: 301 NNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAV 360
           NNAST YD++ KSI PLGGF HYGEV NDFVMLKGC+ GTKKRV+TLRKSLLV   R+A+
Sbjct: 301 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 360

Query: 361 ENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK 394
           E I+LKFIDTTSKFGHGRFQT +EK+AFMGP KK
Sbjct: 361 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKK 394


>gi|76496472 ribosomal protein L3 isoform b [Homo sapiens]
          Length = 354

 Score =  560 bits (1443), Expect = e-160
 Identities = 273/394 (69%), Positives = 314/394 (79%), Gaps = 49/394 (12%)

Query: 1   MSHRKFSAPRHGHLGFLPHKRSHRHRGKVKTWPRDDPSQPVHLTAFLGYKAGMTHTLREV 60
           MSHRKFSAPRHG LGFLP KRS RHRGKVK++P+DDPS+PVHLTAFLGYKAGMTH +REV
Sbjct: 1   MSHRKFSAPRHGSLGFLPRKRSSRHRGKVKSFPKDDPSKPVHLTAFLGYKAGMTHIVREV 60

Query: 61  HRPGLKISKREEVEAVTIVETPPLVVVGVVGYVATPRGLRSFKTIFAEHLSDECRRRFYK 120
            RPG K++K+E VEAVTIVETPP+VVVG+VGYV TPRGLR+FKT+FAEH+SDEC+RRFYK
Sbjct: 61  DRPGSKVNKKEVVEAVTIVETPPMVVVGIVGYVETPRGLRTFKTVFAEHISDECKRRFYK 120

Query: 121 DWHKSKKKAFTKACKRWRDTDGKKQLQKDFAAMKKYCKVIRVIVHTQMKLLPFRQKKAHI 180
           +WHKSK                                                 KKAH+
Sbjct: 121 NWHKSK-------------------------------------------------KKAHL 131

Query: 181 MEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKL 240
           MEIQ+NGGTVAEK+ WA+ RLE+QVPV+ VF Q E+IDVI VTKG+G KGVTSRWHTKKL
Sbjct: 132 MEIQVNGGTVAEKLDWARERLEQQVPVNQVFGQDEMIDVIGVTKGKGYKGVTSRWHTKKL 191

Query: 241 PRKTHKGLRKVACIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMEDGKLVK 300
           PRKTH+GLRKVACIGAWHPARV  S+ARAGQKGYHHRTE+NKKI++IG+G  ++DGKL+K
Sbjct: 192 PRKTHRGLRKVACIGAWHPARVAFSVARAGQKGYHHRTEINKKIYKIGQGYLIKDGKLIK 251

Query: 301 NNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAV 360
           NNAST YD++ KSI PLGGF HYGEV NDFVMLKGC+ GTKKRV+TLRKSLLV   R+A+
Sbjct: 252 NNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCVVGTKKRVLTLRKSLLVQTKRRAL 311

Query: 361 ENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK 394
           E I+LKFIDTTSKFGHGRFQT +EK+AFMGP KK
Sbjct: 312 EKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKK 345


>gi|169215858 PREDICTED: similar to ribosomal protein L3, partial
           [Homo sapiens]
          Length = 126

 Score =  184 bits (468), Expect = 1e-46
 Identities = 87/117 (74%), Positives = 103/117 (88%)

Query: 278 TELNKKIFRIGRGPHMEDGKLVKNNASTSYDVTAKSITPLGGFPHYGEVNNDFVMLKGCI 337
           TE+NKKI++IG+G  ++DGKL+KNNAST YD++ KSI PLGGF HYGEV NDFVMLKGC+
Sbjct: 1   TEINKKIYKIGQGYLIKDGKLIKNNASTDYDLSDKSINPLGGFVHYGEVTNDFVMLKGCV 60

Query: 338 AGTKKRVITLRKSLLVHHSRQAVENIELKFIDTTSKFGHGRFQTAQEKRAFMGPQKK 394
            GTKKRV+TLRKSLLV   R+A+E I+LKFIDTTSKFGHGRFQT +EK+AFMGP KK
Sbjct: 61  VGTKKRVLTLRKSLLVQTKRRALEKIDLKFIDTTSKFGHGRFQTMEEKKAFMGPLKK 117


>gi|6005862 mitochondrial ribosomal protein L3 [Homo sapiens]
          Length = 348

 Score = 40.8 bits (94), Expect = 0.002
 Identities = 29/95 (30%), Positives = 44/95 (46%), Gaps = 9/95 (9%)

Query: 199 ARLEKQVPVHSV-FSQSEVIDVIAVTKGRGVKGVTSRWHTKKLP-----RKTHKGLRKVA 252
           A ++   P+++  F   + +DV A T G+G +GV  RW  K  P      KTH   R+  
Sbjct: 185 AAIKPGTPLYAAHFRPGQYVDVTAKTIGKGFQGVMKRWGFKGQPATHGQTKTH---RRPG 241

Query: 253 CIGAWHPARVGCSIARAGQKGYHHRTELNKKIFRI 287
            +      RV       G+ G  +RTE   K++RI
Sbjct: 242 AVATGDIGRVWPGTKMPGKMGNIYRTEYGLKVWRI 276


>gi|110578649 cache domain containing 1 [Homo sapiens]
          Length = 1223

 Score = 36.6 bits (83), Expect = 0.042
 Identities = 31/96 (32%), Positives = 42/96 (43%), Gaps = 9/96 (9%)

Query: 33  PRDDPSQPVHLTAFLGYKAGMTHTLREVHRPGLKISKREEV--------EAVTIVETPPL 84
           P +  SQP        Y A ++   R +  PGLK S R EV        E +T +E   L
Sbjct: 614 PYEHLSQPETKRMVEHYTAYLSDNTRLIANPGLKFSVRNEVMATSHVTDEWMTQMEMSSL 673

Query: 85  VVVGVVGYVATPRG-LRSFKTIFAEHLSDECRRRFY 119
               V  Y+ATP G LR +     +   D  RR++Y
Sbjct: 674 NTYIVRRYIATPNGVLRIYPGSLMDKAFDPTRRQWY 709


>gi|222418570 hypothetical protein LOC728591 isoform b [Homo
           sapiens]
          Length = 139

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 4/117 (3%)

Query: 171 LPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKG 230
           +P       + +++    T+  +V +   +LE++   +   +      +  +++G G+  
Sbjct: 1   MPVESLNTLLKQLEEEKKTLESQVKYYALKLEQESKAYQKINNERRTYLAEMSQGSGLHQ 60

Query: 231 VTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGC----SIARAGQKGYHHRTELNKK 283
           V+ R    +LPR     ++ +       P +V C      + AG  G  +RT L +K
Sbjct: 61  VSKRQQVDQLPRMQENLVKTLLLKEELDPLKVSCLETLGFSAAGVAGPENRTCLGQK 117


>gi|222418567 hypothetical protein LOC728591 isoform b [Homo
           sapiens]
          Length = 139

 Score = 31.2 bits (69), Expect = 1.8
 Identities = 22/117 (18%), Positives = 49/117 (41%), Gaps = 4/117 (3%)

Query: 171 LPFRQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKG 230
           +P       + +++    T+  +V +   +LE++   +   +      +  +++G G+  
Sbjct: 1   MPVESLNTLLKQLEEEKKTLESQVKYYALKLEQESKAYQKINNERRTYLAEMSQGSGLHQ 60

Query: 231 VTSRWHTKKLPRKTHKGLRKVACIGAWHPARVGC----SIARAGQKGYHHRTELNKK 283
           V+ R    +LPR     ++ +       P +V C      + AG  G  +RT L +K
Sbjct: 61  VSKRQQVDQLPRMQENLVKTLLLKEELDPLKVSCLETLGFSAAGVAGPENRTCLGQK 117


>gi|49355778 inter-alpha trypsin inhibitor heavy chain precursor 5
           isoform 3 [Homo sapiens]
          Length = 702

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 174 RQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTS 233
           R  K +I  +   GGT          RL  +   HS      V  ++ +T G+   G T 
Sbjct: 356 RDGKVYIHHMSPTGGTDINGALQRAIRLLNKYVAHSGIGDRSVSLIVFLTDGKPTVGET- 414

Query: 234 RWHTKKLPRKTHKGLRKVACI 254
             HT K+   T +  R   CI
Sbjct: 415 --HTLKILNNTREAARGQVCI 433


>gi|153945780 inter-alpha trypsin inhibitor heavy chain precursor 5
           isoform 1 [Homo sapiens]
          Length = 956

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 174 RQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTS 233
           R  K +I  +   GGT          RL  +   HS      V  ++ +T G+   G T 
Sbjct: 356 RDGKVYIHHMSPTGGTDINGALQRAIRLLNKYVAHSGIGDRSVSLIVFLTDGKPTVGET- 414

Query: 234 RWHTKKLPRKTHKGLRKVACI 254
             HT K+   T +  R   CI
Sbjct: 415 --HTLKILNNTREAARGQVCI 433


>gi|153945711 inter-alpha trypsin inhibitor heavy chain precursor 5
           isoform 2 [Homo sapiens]
          Length = 742

 Score = 30.4 bits (67), Expect = 3.0
 Identities = 22/81 (27%), Positives = 31/81 (38%), Gaps = 3/81 (3%)

Query: 174 RQKKAHIMEIQLNGGTVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTS 233
           R  K +I  +   GGT          RL  +   HS      V  ++ +T G+   G T 
Sbjct: 142 RDGKVYIHHMSPTGGTDINGALQRAIRLLNKYVAHSGIGDRSVSLIVFLTDGKPTVGET- 200

Query: 234 RWHTKKLPRKTHKGLRKVACI 254
             HT K+   T +  R   CI
Sbjct: 201 --HTLKILNNTREAARGQVCI 219


>gi|222418572 hypothetical protein LOC728591 isoform c [Homo
           sapiens]
          Length = 141

 Score = 30.0 bits (66), Expect = 3.9
 Identities = 21/99 (21%), Positives = 43/99 (43%), Gaps = 4/99 (4%)

Query: 189 TVAEKVAWAQARLEKQVPVHSVFSQSEVIDVIAVTKGRGVKGVTSRWHTKKLPRKTHKGL 248
           T+  +V +   +LE++   +   +      +  +++G G+  V+ R    +LPR     +
Sbjct: 21  TLESQVKYYALKLEQESKAYQKINNERRTYLAEMSQGSGLHQVSKRQQVDQLPRMQENLV 80

Query: 249 RKVACIGAWHPARVGC----SIARAGQKGYHHRTELNKK 283
           + +       P +V C      + AG  G  +RT L +K
Sbjct: 81  KTLLLKEELDPLKVSCLETLGFSAAGVAGPENRTCLGQK 119


>gi|20336726 ceramide kinase [Homo sapiens]
          Length = 537

 Score = 29.3 bits (64), Expect = 6.7
 Identities = 25/116 (21%), Positives = 49/116 (42%), Gaps = 15/116 (12%)

Query: 259 PARVGCSIARAGQKGYHHRTELNKKIFRIGRGPHMED-----GKLVKNNASTSYDVTAKS 313
           P R GC + R  ++      E  K ++ +     +E+     GK +  NA+       +S
Sbjct: 346 PCRAGCFVCRQSKQQLEE--EQKKALYGLEAAEDVEEWQVVCGKFLAINATNMSCACRRS 403

Query: 314 ITPLGGFPHYGEVNNDFVMLKGCIAGTKKRVITLRKSLLVHHSRQAVENIELKFID 369
              L    H G+ ++D ++++ C      R   LR   L+ H+ Q  +  +  F++
Sbjct: 404 PRGLSPAAHLGDGSSDLILIRKC-----SRFNFLR--FLIRHTNQQ-DQFDFTFVE 451


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 16,154,954
Number of Sequences: 37866
Number of extensions: 703610
Number of successful extensions: 1333
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 5
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 1325
Number of HSP's gapped (non-prelim): 16
length of query: 407
length of database: 18,247,518
effective HSP length: 105
effective length of query: 302
effective length of database: 14,271,588
effective search space: 4310019576
effective search space used: 4310019576
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.