Guide to the Human Genome
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Name: KCNJ8 Sequence: fasta or formatted (424aa) NCBI GI: 4826802
Description:

potassium inwardly-rectifying channel J8

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.8         29           2
 C cysteine            1.9          8           1
 D aspartate           3.1         13           1
 E glutamate           6.4         27           3
 F phenylalanine       4.5         19           1
 G glycine             4.5         19           2
 H histidine           2.1          9           1
 I isoleucine          9.4         40           2
 K lysine              4.7         20           2
 L leucine             8.5         36           2
 M methionine          3.5         15           2
 N asparagine          5.2         22           2
 P proline             3.3         14           1
 Q glutamine           3.5         15           1
 R arginine            7.5         32           2
 S serine              7.8         33           2
 T threonine           6.1         26           3
 V valine              8.3         35           2
 W tryptophan          1.2          5           2
 Y tyrosine            1.7          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium inwardly-rectifying channel J8 
KCNJ11                0.629   potassium inwardly-rectifying channel J11 
KCNJ6                 0.401   potassium inwardly-rectifying channel J6 
KCNJ9                 0.391   potassium inwardly-rectifying channel subfamily J9 [...
KCNJ5                 0.386   potassium inwardly-rectifying channel J5 
KCNJ2                 0.384   potassium inwardly-rectifying channel J2 
KCNJ12                0.380   potassium inwardly-rectifying channel, subfamily J, ...
KCNJ3                 0.376   potassium inwardly-rectifying channel J3 
LOC100134444          0.376   PREDICTED: similar to thyrotoxic periodic paralysis...
KCNJ4                 0.376   potassium inwardly-rectifying channel J4 
KCNJ4                 0.376   potassium inwardly-rectifying channel J4 
LOC100131509          0.365   PREDICTED: similar to inward rectifying K+ channel ...
LOC100131509          0.365   PREDICTED: similar to inward rectifying K+ channel ...
LOC100290070          0.365   PREDICTED: hypothetical protein XP_002347768 
KCNJ14                0.338   potassium inwardly-rectifying channel J14 
KCNJ14                0.338   potassium inwardly-rectifying channel J14 
KCNJ1                 0.330   potassium inwardly-rectifying channel J1 isoform b [...
KCNJ1                 0.330   potassium inwardly-rectifying channel J1 isoform b [...
KCNJ1                 0.330   potassium inwardly-rectifying channel J1 isoform a [H...
KCNJ1                 0.330   potassium inwardly-rectifying channel J1 isoform b ...
KCNJ1                 0.330   potassium inwardly-rectifying channel J1 isoform b [...
KCNJ16                0.298   potassium inwardly-rectifying channel J16 
KCNJ16                0.298   potassium inwardly-rectifying channel J16 
KCNJ16                0.298   potassium inwardly-rectifying channel J16 
KCNJ10                0.271   potassium inwardly-rectifying channel, subfamily J, ...
KCNJ15                0.250   potassium inwardly-rectifying channel J15 
KCNJ15                0.250   potassium inwardly-rectifying channel J15 
KCNJ15                0.250   potassium inwardly-rectifying channel J15 
KCNJ13                0.167   potassium inwardly-rectifying channel J13 
CTAGE5                0.006   CTAGE family, member 5 isoform 3 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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