Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: KCNJ2 Sequence: fasta or formatted (427aa) NCBI GI: 4504835
Description:

potassium inwardly-rectifying channel J2

Referenced in:

Potassium Channels

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.6         28           2
 C cysteine            3.0         13           1
 D aspartate           6.1         26           2
 E glutamate           7.3         31           2
 F phenylalanine       5.4         23           2
 G glycine             5.4         23           1
 H histidine           2.6         11           1
 I isoleucine          7.3         31           2
 K lysine              5.2         22           2
 L leucine             7.7         33           2
 M methionine          2.6         11           1
 N asparagine          4.2         18           1
 P proline             3.3         14           2
 Q glutamine           2.6         11           2
 R arginine            5.4         23           2
 S serine              7.5         32           2
 T threonine           5.2         22           2
 V valine              8.4         36           2
 W tryptophan          1.4          6           1
 Y tyrosine            3.0         13           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   potassium inwardly-rectifying channel J2 
KCNJ12                0.711   potassium inwardly-rectifying channel, subfamily J, ...
LOC100134444          0.698   PREDICTED: similar to thyrotoxic periodic paralysis...
LOC100131509          0.675   PREDICTED: similar to inward rectifying K+ channel ...
LOC100131509          0.675   PREDICTED: similar to inward rectifying K+ channel ...
LOC100290070          0.675   PREDICTED: hypothetical protein XP_002347768 
KCNJ4                 0.591   potassium inwardly-rectifying channel J4 
KCNJ4                 0.591   potassium inwardly-rectifying channel J4 
KCNJ14                0.569   potassium inwardly-rectifying channel J14 
KCNJ14                0.569   potassium inwardly-rectifying channel J14 
KCNJ5                 0.430   potassium inwardly-rectifying channel J5 
KCNJ9                 0.424   potassium inwardly-rectifying channel subfamily J9 [...
KCNJ6                 0.423   potassium inwardly-rectifying channel J6 
KCNJ3                 0.420   potassium inwardly-rectifying channel J3 
KCNJ8                 0.368   potassium inwardly-rectifying channel J8 
KCNJ11                0.365   potassium inwardly-rectifying channel J11 
KCNJ1                 0.353   potassium inwardly-rectifying channel J1 isoform b [...
KCNJ1                 0.353   potassium inwardly-rectifying channel J1 isoform b [...
KCNJ1                 0.353   potassium inwardly-rectifying channel J1 isoform a [H...
KCNJ1                 0.353   potassium inwardly-rectifying channel J1 isoform b ...
KCNJ1                 0.353   potassium inwardly-rectifying channel J1 isoform b [...
KCNJ16                0.352   potassium inwardly-rectifying channel J16 
KCNJ16                0.352   potassium inwardly-rectifying channel J16 
KCNJ16                0.352   potassium inwardly-rectifying channel J16 
KCNJ15                0.296   potassium inwardly-rectifying channel J15 
KCNJ15                0.296   potassium inwardly-rectifying channel J15 
KCNJ15                0.296   potassium inwardly-rectifying channel J15 
KCNJ10                0.289   potassium inwardly-rectifying channel, subfamily J, ...
KCNJ13                0.204   potassium inwardly-rectifying channel J13 
SLC44A5               0.011   solute carrier family 44, member 5 isoform B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press