Guide to the Human Genome
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Name: POLR1C Sequence: fasta or formatted (346aa) NCBI GI: 42560246
Description:

RNA polymerase I subunit isoform 1

Referenced in:

RNA Polymerase and General Transcription Factors

Other entries for this name:
alt prot [342aa] RNA polymerase I subunit isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.5         26           2
 C cysteine            1.2          4           1
 D aspartate           7.8         27           2
 E glutamate           8.1         28           2
 F phenylalanine       4.3         15           1
 G glycine             5.2         18           1
 H histidine           3.2         11           1
 I isoleucine          5.5         19           1
 K lysine              4.0         14           2
 L leucine             9.0         31           2
 M methionine          2.6          9           1
 N asparagine          4.0         14           2
 P proline             4.9         17           2
 Q glutamine           3.5         12           1
 R arginine            7.8         27           2
 S serine              4.3         15           2
 T threonine           4.0         14           2
 V valine             10.1         35           2
 W tryptophan          0.6          2           1
 Y tyrosine            2.3          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   RNA polymerase I subunit isoform 1 
POLR1C                0.889   RNA polymerase I subunit isoform 2 
POLR2C                0.112   DNA directed RNA polymerase II polypeptide C 
RANBP6                0.007   RAN binding protein 6 
IPO13                 0.006   importin 13 
AGRN                  0.006   agrin 
SNX29                 0.006   sorting nexin 29 
ARHGAP11A             0.006   Rho GTPase activating protein 11A isoform 1 
ARHGAP11A             0.006   Rho GTPase activating protein 11A isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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