Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: TM9SF2 Sequence: fasta or formatted (663aa) NCBI GI: 4758874
Description:

transmembrane 9 superfamily member 2

Referenced in:

Lysosomes and Related Organelles

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             5.9         39           2
 C cysteine            2.9         19           1
 D aspartate           3.9         26           2
 E glutamate           4.8         32           2
 F phenylalanine       8.9         59           2
 G glycine             6.5         43           2
 H histidine           2.7         18           2
 I isoleucine          7.7         51           2
 K lysine              5.4         36           2
 L leucine            10.1         67           4
 M methionine          3.0         20           1
 N asparagine          2.6         17           1
 P proline             5.0         33           2
 Q glutamine           2.4         16           1
 R arginine            3.3         22           2
 S serine              6.5         43           2
 T threonine           5.6         37           1
 V valine              6.2         41           2
 W tryptophan          2.3         15           1
 Y tyrosine            4.4         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   transmembrane 9 superfamily member 2 
TM9SF4                0.387   transmembrane 9 superfamily protein member 4 
TM9SF3                0.209   transmembrane 9 superfamily member 3 
TM9SF1                0.207   transmembrane 9 superfamily member 1 isoform a [Homo...
TM9SF1                0.128   transmembrane 9 superfamily member 1 isoform b [Homo...
DPY19L2               0.008   dpy-19-like 2 
FLT1                  0.007   fms-related tyrosine kinase 1 isoform 1 precursor [...
LOC100131203          0.006   PREDICTED: similar to serine/threonine-protein kina...
LOC100131203          0.006   PREDICTED: similar to serine/threonine-protein kina...
DPY19L1               0.005   dpy-19-like 1 
ADAMTS8               0.004   ADAM metallopeptidase with thrombospondin type 1 mo...
ATP10A                0.004   ATPase, class V, type 10A 
KDR                   0.004   kinase insert domain receptor precursor 
ATP8B1                0.004   ATPase, class I, type 8B, member 1 
LOC100134353          0.004   PREDICTED: hypothetical protein 
P2RY8                 0.004   G-protein coupled purinergic receptor P2Y8 
ATP11B                0.004   ATPase, class VI, type 11B 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press