Search of human proteins with 4758442

Search of human proteins with 4758442

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4758442 glia maturation factor, beta [Homo sapiens]
         (142 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4758442 glia maturation factor, beta [Homo sapiens]                288   8e-79
gi|4758440 glia maturation factor, gamma [Homo sapiens]               244   2e-65
gi|14719392 cofilin 2 [Homo sapiens]                                   37   0.006
gi|33946278 cofilin 2 [Homo sapiens]                                   37   0.006
gi|5031635 cofilin 1 (non-muscle) [Homo sapiens]                       35   0.016
gi|4503729 FK506 binding protein 52 [Homo sapiens]                     28   3.3  
gi|114155142 nuclear pore complex-associated protein TPR [Homo s...    28   3.3  
gi|197333809 joined to JAZF1 [Homo sapiens]                            27   7.4  
gi|4505463 contactin associated protein 1 precursor [Homo sapiens]     27   7.4  
gi|34147456 TBC domain-containing protein kinase-like [Homo sapi...    27   7.4  
gi|66346733 chloride intracellular channel 2 [Homo sapiens]            27   7.4  
gi|91208420 bassoon protein [Homo sapiens]                             26   9.7  
gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens]                26   9.7  
gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens]                26   9.7  
gi|168823435 hypothetical protein LOC79747 [Homo sapiens]              26   9.7  

>gi|4758442 glia maturation factor, beta [Homo sapiens]
          Length = 142

 Score =  288 bits (738), Expect = 8e-79
 Identities = 142/142 (100%), Positives = 142/142 (100%)

Query: 1   MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDE 60
           MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDE
Sbjct: 1   MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDE 60

Query: 61  LPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV 120
           LPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV
Sbjct: 61  LPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV 120

Query: 121 FEIRNTEDLTEEWLREKLGFFH 142
           FEIRNTEDLTEEWLREKLGFFH
Sbjct: 121 FEIRNTEDLTEEWLREKLGFFH 142


>gi|4758440 glia maturation factor, gamma [Homo sapiens]
          Length = 142

 Score =  244 bits (622), Expect = 2e-65
 Identities = 116/141 (82%), Positives = 131/141 (92%)

Query: 1   MSESLVVCDVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDE 60
           MS+SLVVC+V  +L EKLRKFRFRKET+NAAIIMK+DKD+++VVL+EE + ISP+ELK E
Sbjct: 1   MSDSLVVCEVDPELTEKLRKFRFRKETDNAAIIMKVDKDRQMVVLEEEFQNISPEELKME 60

Query: 61  LPERQPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKV 120
           LPERQPRF+VYSYKY HDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKN+LVQTAELTKV
Sbjct: 61  LPERQPRFVVYSYKYVHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNRLVQTAELTKV 120

Query: 121 FEIRNTEDLTEEWLREKLGFF 141
           FEIR T+DLTE WL+EKL FF
Sbjct: 121 FEIRTTDDLTEAWLQEKLSFF 141


>gi|14719392 cofilin 2 [Homo sapiens]
          Length = 166

 Score = 37.0 bits (84), Expect = 0.006
 Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 15/137 (10%)

Query: 17  KLRKFRFRKETNNA--AIIMKIDKDKRLVVLDEE---LEGISPDELKDE-------LPER 64
           K+RK   ++E      A++  +  DKR ++++E    L G   D ++D        LP  
Sbjct: 19  KVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLN 78

Query: 65  QPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQT-AELTKVFEI 123
             R+ +Y   Y+  + +    L FIF +P     + +M+YA SK+ + +    +   +++
Sbjct: 79  DCRYALYDATYETKESKKE-DLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQV 137

Query: 124 RNTEDLTE-EWLREKLG 139
              +D+ +   L EKLG
Sbjct: 138 NGLDDIKDRSTLGEKLG 154


>gi|33946278 cofilin 2 [Homo sapiens]
          Length = 166

 Score = 37.0 bits (84), Expect = 0.006
 Identities = 34/137 (24%), Positives = 65/137 (47%), Gaps = 15/137 (10%)

Query: 17  KLRKFRFRKETNNA--AIIMKIDKDKRLVVLDEE---LEGISPDELKDE-------LPER 64
           K+RK   ++E      A++  +  DKR ++++E    L G   D ++D        LP  
Sbjct: 19  KVRKSSTQEEIKKRKKAVLFCLSDDKRQIIVEEAKQILVGDIGDTVEDPYTSFVKLLPLN 78

Query: 65  QPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQT-AELTKVFEI 123
             R+ +Y   Y+  + +    L FIF +P     + +M+YA SK+ + +    +   +++
Sbjct: 79  DCRYALYDATYETKESKKE-DLVFIFWAPESAPLKSKMIYASSKDAIKKKFTGIKHEWQV 137

Query: 124 RNTEDLTE-EWLREKLG 139
              +D+ +   L EKLG
Sbjct: 138 NGLDDIKDRSTLGEKLG 154


>gi|5031635 cofilin 1 (non-muscle) [Homo sapiens]
          Length = 166

 Score = 35.4 bits (80), Expect = 0.016
 Identities = 27/107 (25%), Positives = 53/107 (49%), Gaps = 13/107 (12%)

Query: 17  KLRKFRFRKETNNA--AIIMKIDKDKRLVVLDEELEGISPD--ELKDE--------LPER 64
           K+RK    +E      A++  + +DK+ ++L+E  E +  D  +  D+        LP++
Sbjct: 19  KVRKSSTPEEVKKRKKAVLFCLSEDKKNIILEEGKEILVGDVGQTVDDPYATFVKMLPDK 78

Query: 65  QPRFIVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKL 111
             R+ +Y   Y+  + +    L FIF +P     + +M+YA SK+ +
Sbjct: 79  DCRYALYDATYETKESKKE-DLVFIFWAPESAPLKSKMIYASSKDAI 124


>gi|4503729 FK506 binding protein 52 [Homo sapiens]
          Length = 459

 Score = 27.7 bits (60), Expect = 3.3
 Identities = 18/42 (42%), Positives = 23/42 (54%), Gaps = 4/42 (9%)

Query: 94  VGCKPEQQMMYAGSKNKLVQTAEL---TKVFEIRNTEDLTEE 132
           + CKPE     AGS  K+   A L    ++FE +  EDLTEE
Sbjct: 105 ITCKPEYAYGSAGSPPKIPPNATLVFEVELFEFKG-EDLTEE 145


>gi|114155142 nuclear pore complex-associated protein TPR [Homo
           sapiens]
          Length = 2363

 Score = 27.7 bits (60), Expect = 3.3
 Identities = 18/57 (31%), Positives = 31/57 (54%), Gaps = 3/57 (5%)

Query: 1   MSESLVVCDVAEDLVEK--LRKF-RFRKETNNAAIIMKIDKDKRLVVLDEELEGISP 54
           + + L+  + ++D +EK  L K  R  KE  NA  ++   K K  ++ +EEL  +SP
Sbjct: 324 IQDHLLEVEQSKDQMEKEMLEKIGRLEKELENANDLLSATKRKGAILSEEELAAMSP 380


>gi|197333809 joined to JAZF1 [Homo sapiens]
          Length = 739

 Score = 26.6 bits (57), Expect = 7.4
 Identities = 35/124 (28%), Positives = 58/124 (46%), Gaps = 10/124 (8%)

Query: 9   DVAEDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDELPERQPRF 68
           DV E+L  + ++ R   E    A +   DK++RL +LD E E ++  E+ +E P  + R 
Sbjct: 275 DVNEELPARRKRNREDGEKTFVAQMTVFDKNRRLQLLDGEYE-VAMQEM-EECPISKKR- 331

Query: 69  IVYSYKYQHDDGRVSYPLCFIFSSPVGCKPEQQMMYAGSKNKLVQTAELTKVFEIRNTED 128
              +++   D  R+  P    FS   G   +  + + G  N    TA + K    RN+E 
Sbjct: 332 --ATWETILDGKRL--PPFETFSQ--GPTLQFTLRWTGETND-KSTAPIAKPLATRNSES 384

Query: 129 LTEE 132
           L +E
Sbjct: 385 LHQE 388


>gi|4505463 contactin associated protein 1 precursor [Homo sapiens]
          Length = 1384

 Score = 26.6 bits (57), Expect = 7.4
 Identities = 14/45 (31%), Positives = 22/45 (48%)

Query: 45   LDEELEGISPDELKDELPERQPRFIVYSYKYQHDDGRVSYPLCFI 89
            L E   G  P  + +  PE  P ++   + Y HD+G V+  L F+
Sbjct: 1245 LSESNCGAMPRLVSEVPPELDPWYLPPDFPYYHDEGWVAILLGFL 1289


>gi|34147456 TBC domain-containing protein kinase-like [Homo
          sapiens]
          Length = 830

 Score = 26.6 bits (57), Expect = 7.4
 Identities = 16/59 (27%), Positives = 29/59 (49%), Gaps = 4/59 (6%)

Query: 15 VEKLRKFRFRKETNNAAIIMKID----KDKRLVVLDEELEGISPDELKDELPERQPRFI 69
          ++ L +F+  K   +  +   +D    K +RLVV+ E  E    D L++  P R P ++
Sbjct: 36 IKILGRFQILKTITHPRLCQYVDISRGKHERLVVVAEHCERSLEDLLRERKPVRYPSYL 94


>gi|66346733 chloride intracellular channel 2 [Homo sapiens]
          Length = 247

 Score = 26.6 bits (57), Expect = 7.4
 Identities = 11/25 (44%), Positives = 16/25 (64%)

Query: 54 PDELKDELPERQPRFIVYSYKYQHD 78
          P+ELKD  P   P F+VY+ + + D
Sbjct: 58 PEELKDLAPGTNPPFLVYNKELKTD 82


>gi|91208420 bassoon protein [Homo sapiens]
          Length = 3926

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 14/57 (24%), Positives = 32/57 (56%), Gaps = 3/57 (5%)

Query: 15   VEKLRKFRFRKETNNAAIIMKIDKDKRLVVLD---EELEGISPDELKDELPERQPRF 68
            +EKLR+ R ++E     + ++  +++  +++    +EL+ I    L+ +  ERQ +F
Sbjct: 2382 LEKLRQLRLQEELERERVELQRHREEEQLLVQRELQELQTIKHHVLQQQQEERQAQF 2438


>gi|62177112 katanin p60 subunit A-like 1 [Homo sapiens]
          Length = 490

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 7/47 (14%)

Query: 12  EDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELK 58
           ED+ EK+  +       + A I  + +D  L+ +   + G+SP+E++
Sbjct: 406 EDIAEKIEGY-------SGADITNVCRDASLMAMRRRINGLSPEEIR 445


>gi|14149767 katanin p60 subunit A-like 1 [Homo sapiens]
          Length = 490

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 12/47 (25%), Positives = 25/47 (53%), Gaps = 7/47 (14%)

Query: 12  EDLVEKLRKFRFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELK 58
           ED+ EK+  +       + A I  + +D  L+ +   + G+SP+E++
Sbjct: 406 EDIAEKIEGY-------SGADITNVCRDASLMAMRRRINGLSPEEIR 445


>gi|168823435 hypothetical protein LOC79747 [Homo sapiens]
          Length = 1667

 Score = 26.2 bits (56), Expect = 9.7
 Identities = 15/56 (26%), Positives = 29/56 (51%), Gaps = 2/56 (3%)

Query: 22   RFRKETNNAAIIMKIDKDKRLVVLDEELEGISPDELKDELPERQPRFIVYSYKYQH 77
            +FR+       I  ID+++RL + DE L+     E++D L E + +      +Y++
Sbjct: 1572 QFRQHRTRVLSIRNIDQEERLKLKDEVLDMYK--EMQDSLDEARQKIFDIREEYRN 1625


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.397 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,180,857
Number of Sequences: 37866
Number of extensions: 221657
Number of successful extensions: 533
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 528
Number of HSP's gapped (non-prelim): 16
length of query: 142
length of database: 18,247,518
effective HSP length: 92
effective length of query: 50
effective length of database: 14,763,846
effective search space: 738192300
effective search space used: 738192300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.