Search of human proteins with 4757714

Search of human proteins with 4757714

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4757714 acid phosphatase 1, soluble isoform c [Homo sapiens]
         (158 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4757714 acid phosphatase 1, soluble isoform c [Homo sapiens]       329   5e-91
gi|6005988 acid phosphatase 1, soluble isoform b [Homo sapiens]       288   2e-78
gi|239753076 PREDICTED: similar to acid phosphatase 1, soluble [...   196   5e-51
gi|239747634 PREDICTED: hypothetical protein XP_002347914 [Homo ...   196   5e-51
gi|239741502 PREDICTED: hypothetical protein XP_002342217 [Homo ...   196   5e-51
gi|96304457 acid phosphatase 1, soluble isoform d [Homo sapiens]      163   5e-41
gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]                    32   0.29 
gi|5031877 lamin B1 [Homo sapiens]                                     31   0.38 
gi|106507301 DNA-directed DNA polymerase alpha 1 [Homo sapiens]        31   0.38 
gi|71565160 SMC1 structural maintenance of chromosomes 1-like 2 ...    30   0.66 
gi|9506675 glucose-fructose oxidoreductase domain containing 1 [...    28   4.3  
gi|239758017 PREDICTED: similar to pseudoautosomal GTP-binding p...    27   9.5  

>gi|4757714 acid phosphatase 1, soluble isoform c [Homo sapiens]
          Length = 158

 Score =  329 bits (844), Expect = 5e-91
 Identities = 158/158 (100%), Positives = 158/158 (100%)

Query: 1   MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG 60
           MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
Sbjct: 1   MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG 60

Query: 61  QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY 120
           QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY
Sbjct: 61  QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY 120

Query: 121 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 158
           DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
Sbjct: 121 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 158


>gi|6005988 acid phosphatase 1, soluble isoform b [Homo sapiens]
          Length = 158

 Score =  288 bits (736), Expect = 2e-78
 Identities = 138/158 (87%), Positives = 144/158 (91%)

Query: 1   MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG 60
           MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENW +DS A S + +G  PD R 
Sbjct: 1   MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWVIDSGAVSDWNVGRSPDPRA 60

Query: 61  QSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY 120
            SC++ HGI  +H ARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY
Sbjct: 61  VSCLRNHGIHTAHKARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSY 120

Query: 121 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 158
           DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH
Sbjct: 121 DPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 158


>gi|239753076 PREDICTED: similar to acid phosphatase 1, soluble
           [Homo sapiens]
          Length = 134

 Score =  196 bits (499), Expect = 5e-51
 Identities = 94/106 (88%), Positives = 97/106 (91%)

Query: 53  GNPPDYRGQSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKA 112
           G PPD RGQS  +RHGIPMSHVARQITKE+FA FDYI CMD+SNLRDLNRKSNQVKTCKA
Sbjct: 29  GTPPDSRGQSFTERHGIPMSHVARQITKENFAKFDYIPCMDDSNLRDLNRKSNQVKTCKA 88

Query: 113 KIELLGSYDPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 158
           KIELLGSYDPQKQLIIEDPYYGNDSDFE VYQ CVRC RAFLEKAH
Sbjct: 89  KIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQLCVRCYRAFLEKAH 134


>gi|239747634 PREDICTED: hypothetical protein XP_002347914 [Homo
           sapiens]
          Length = 215

 Score =  196 bits (499), Expect = 5e-51
 Identities = 94/106 (88%), Positives = 97/106 (91%)

Query: 53  GNPPDYRGQSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKA 112
           G PPD RGQS  +RHGIPMSHVARQITKE+FA FDYI CMD+SNLRDLNRKSNQVKTCKA
Sbjct: 110 GTPPDSRGQSFTERHGIPMSHVARQITKENFAKFDYIPCMDDSNLRDLNRKSNQVKTCKA 169

Query: 113 KIELLGSYDPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 158
           KIELLGSYDPQKQLIIEDPYYGNDSDFE VYQ CVRC RAFLEKAH
Sbjct: 170 KIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQLCVRCYRAFLEKAH 215


>gi|239741502 PREDICTED: hypothetical protein XP_002342217 [Homo
           sapiens]
          Length = 134

 Score =  196 bits (499), Expect = 5e-51
 Identities = 94/106 (88%), Positives = 97/106 (91%)

Query: 53  GNPPDYRGQSCMKRHGIPMSHVARQITKEDFATFDYILCMDESNLRDLNRKSNQVKTCKA 112
           G PPD RGQS  +RHGIPMSHVARQITKE+FA FDYI CMD+SNLRDLNRKSNQVKTCKA
Sbjct: 29  GTPPDSRGQSFTERHGIPMSHVARQITKENFAKFDYIPCMDDSNLRDLNRKSNQVKTCKA 88

Query: 113 KIELLGSYDPQKQLIIEDPYYGNDSDFETVYQQCVRCCRAFLEKAH 158
           KIELLGSYDPQKQLIIEDPYYGNDSDFE VYQ CVRC RAFLEKAH
Sbjct: 89  KIELLGSYDPQKQLIIEDPYYGNDSDFEMVYQLCVRCYRAFLEKAH 134


>gi|96304457 acid phosphatase 1, soluble isoform d [Homo sapiens]
          Length = 112

 Score =  163 bits (413), Expect = 5e-41
 Identities = 81/95 (85%), Positives = 83/95 (87%), Gaps = 2/95 (2%)

Query: 1  MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG 60
          MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG
Sbjct: 1  MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG 60

Query: 61 QSCMKRHGIPMSHVARQITKEDFATFDYILCMDES 95
          QSCMKRHGIPMSHVARQ+   D      +LC   S
Sbjct: 61 QSCMKRHGIPMSHVARQVPSLDLKL--CVLCFSGS 93


>gi|46049114 M-phase phosphoprotein 1 [Homo sapiens]
          Length = 1780

 Score = 31.6 bits (70), Expect = 0.29
 Identities = 22/73 (30%), Positives = 39/73 (53%), Gaps = 6/73 (8%)

Query: 92   MDESNLRDLNRKSNQVKTCKAKIELLGS-YDPQKQL---IIEDPYYGND--SDFETVYQQ 145
            +D  NLRDL+  S +      +++LLG+ Y   KQ+    I++P   N   S  E ++++
Sbjct: 964  IDLLNLRDLSNGSEEDNLPNTQLDLLGNDYLVSKQVKEYRIQEPNRENSFHSSIEAIWEE 1023

Query: 146  CVRCCRAFLEKAH 158
            C    +A  +K+H
Sbjct: 1024 CKEIVKASSKKSH 1036


>gi|5031877 lamin B1 [Homo sapiens]
          Length = 586

 Score = 31.2 bits (69), Expect = 0.38
 Identities = 28/121 (23%), Positives = 51/121 (42%), Gaps = 6/121 (4%)

Query: 5   ATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRGQSCM 64
           A +++L V L N C+S   +  FRK + ++ I+E  R         + G   +Y  +   
Sbjct: 185 ADETLLKVDLENRCQSLTEDLEFRKSMYEEEINETRRKHETRLVEVDSGRQIEYEYKLAQ 244

Query: 65  KRHGIPMSHVAR-QITKEDF-----ATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLG 118
             H +   H A+ ++ KE+      A  +      E N   +N    ++   + +IE L 
Sbjct: 245 ALHEMREQHDAQVRLYKEELEQTYHAKLENARLSSEMNTSTVNSAREELMESRMRIESLS 304

Query: 119 S 119
           S
Sbjct: 305 S 305


>gi|106507301 DNA-directed DNA polymerase alpha 1 [Homo sapiens]
          Length = 1462

 Score = 31.2 bits (69), Expect = 0.38
 Identities = 27/103 (26%), Positives = 41/103 (39%), Gaps = 9/103 (8%)

Query: 1    MAEQATKSVLFVCLGNICRSPIAEAVFRKLVTDQNISENWRVDSAATSGYEIGNPPDYRG 60
            +A+     V+   L +  R  I E + ++L+    I EN    S   S +EI        
Sbjct: 1087 LAKDTGNFVIGQILSDQSRDTIVENIQKRLI---EIGENVLNGSVPVSQFEINKALTKDP 1143

Query: 61   QSCMKRHGIPMSHVARQITKEDFA------TFDYILCMDESNL 97
            Q    +  +P  HVA  I  +         T  Y++C D SNL
Sbjct: 1144 QDYPDKKSLPHVHVALWINSQGGRKVKAGDTVSYVICQDGSNL 1186


>gi|71565160 SMC1 structural maintenance of chromosomes 1-like 2
           [Homo sapiens]
          Length = 1235

 Score = 30.4 bits (67), Expect = 0.66
 Identities = 13/50 (26%), Positives = 30/50 (60%)

Query: 80  KEDFATFDYILCMDESNLRDLNRKSNQVKTCKAKIELLGSYDPQKQLIIE 129
           KE+ A  +  L +D  +++ +N +  ++K CK  I+++ +  PQ + +I+
Sbjct: 561 KEERAEPETFLALDYLDIKPINERLRELKGCKMVIDVIKTQFPQLKKVIQ 610


>gi|9506675 glucose-fructose oxidoreductase domain containing 1
           [Homo sapiens]
          Length = 390

 Score = 27.7 bits (60), Expect = 4.3
 Identities = 15/39 (38%), Positives = 20/39 (51%), Gaps = 8/39 (20%)

Query: 60  GQSCMKRHGIPMSHVA--------RQITKEDFATFDYIL 90
           GQ  +K HG+  + V         RQIT +DF TF  +L
Sbjct: 189 GQKAVKVHGLLKTFVKQTDHIKGIRQITSDDFCTFQMVL 227


>gi|239758017 PREDICTED: similar to pseudoautosomal GTP-binding
           protein-like protein [Homo sapiens]
          Length = 411

 Score = 26.6 bits (57), Expect = 9.5
 Identities = 9/21 (42%), Positives = 13/21 (61%)

Query: 54  NPPDYRGQSCMKRHGIPMSHV 74
           +PP +R   C+ RHG P  H+
Sbjct: 107 DPPRHRPHLCLSRHGSPPHHL 127


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.134    0.410 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,080,376
Number of Sequences: 37866
Number of extensions: 239407
Number of successful extensions: 576
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 9
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 566
Number of HSP's gapped (non-prelim): 13
length of query: 158
length of database: 18,247,518
effective HSP length: 94
effective length of query: 64
effective length of database: 14,688,114
effective search space: 940039296
effective search space used: 940039296
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.