Guide to the Human Genome
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Name: LOC100291559 Sequence: fasta or formatted (134aa) NCBI GI: 239753076
Description:

PREDICTED: similar to acid phosphatase 1, soluble

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7          9           2
 C cysteine            3.0          4           1
 D aspartate           8.2         11           2
 E glutamate           6.0          8           1
 F phenylalanine       3.7          5           1
 G glycine             5.2          7           1
 H histidine           3.0          4           1
 I isoleucine          4.5          6           2
 K lysine              8.2         11           1
 L leucine             6.7          9           2
 M methionine          4.5          6           2
 N asparagine          3.7          5           1
 P proline             6.0          8           2
 Q glutamine           5.2          7           1
 R arginine            6.0          8           1
 S serine              6.7          9           1
 T threonine           5.2          7           1
 V valine              3.0          4           1
 W tryptophan          0.0          0           0
 Y tyrosine            4.5          6           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   PREDICTED: similar to acid phosphatase 1, soluble [... 
LOC100288820          1.000   PREDICTED: hypothetical protein XP_002342217 
LOC100290103          0.788   PREDICTED: hypothetical protein XP_002347914 
ACP1                  0.671   acid phosphatase 1, soluble isoform c 
ACP1                  0.596   acid phosphatase 1, soluble isoform b 
ACP1                  0.086   acid phosphatase 1, soluble isoform d 
KIF20B                0.016   M-phase phosphoprotein 1 
RAP2B                 0.008   RAP2B, member of RAS oncogene family 
RAP2A                 0.008   RAP2A, member of RAS oncogene family 
RAP2C                 0.008   RAP2C, member of RAS oncogene family 
RAP1B                 0.008   RAP1B, member of RAS oncogene family 
RAP1B                 0.008   RAP1B, member of RAS oncogene family 
RAP1A                 0.004   RAP1A, member of RAS oncogene family 
RAP1A                 0.004   RAP1A, member of RAS oncogene family 
UPF3B                 0.004   UPF3 regulator of nonsense transcripts homolog B iso...
HISPPD1               0.004   Histidine acid phosphatase domain containing 1 [Homo...
SHB                   0.004   Src homology 2 domain containing adaptor protein B ...
UPF3B                 0.004   UPF3 regulator of nonsense transcripts homolog B iso...
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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