Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 47271479
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|47271479 Na+/H+ exchanger domain containing 2 [Homo sapiens]
(537 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|47271479 Na+/H+ exchanger domain containing 2 [Homo sapiens] 1054 0.0
gi|66793392 Na+/H+ exchanger domain containing 1 isoform 1 [Homo... 563 e-160
gi|154937338 Na+/H+ exchanger domain containing 1 isoform 2 [Hom... 508 e-144
gi|169194717 PREDICTED: similar to Na+/H+ exchanger domain conta... 313 3e-85
gi|169194736 PREDICTED: similar to hCG1988827 [Homo sapiens] 69 8e-12
gi|89030918 PREDICTED: similar to hCG1988827 [Homo sapiens] 69 8e-12
gi|13540547 solute carrier family 2 member 10 [Homo sapiens] 34 0.29
gi|8394402 taste receptor T2R4 [Homo sapiens] 32 1.1
gi|4758012 clathrin heavy chain 1 [Homo sapiens] 31 3.3
gi|59806361 hypothetical protein LOC387104 [Homo sapiens] 30 4.3
gi|94721259 solute carrier family 26, member 6 isoform 4 [Homo s... 30 7.3
gi|94721257 solute carrier family 26, member 6 isoform 3 [Homo s... 30 7.3
gi|94721255 solute carrier family 26, member 6 isoform 2 [Homo s... 30 7.3
gi|94721253 solute carrier family 26, member 6 isoform 1 [Homo s... 30 7.3
gi|91208428 protein tyrosine phosphatase, receptor-type, zeta1 p... 29 9.5
gi|50726952 retinol dehydrogenase 5 (11-cis and 9-cis) [Homo sap... 29 9.5
>gi|47271479 Na+/H+ exchanger domain containing 2 [Homo sapiens]
Length = 537
Score = 1054 bits (2725), Expect = 0.0
Identities = 537/537 (100%), Positives = 537/537 (100%)
Query: 1 MGDEDKRITYEDSEPSTGMNYTPSMHQEAQEETVMKLKGIDANEPTEGSILLKSSEKKLQ 60
MGDEDKRITYEDSEPSTGMNYTPSMHQEAQEETVMKLKGIDANEPTEGSILLKSSEKKLQ
Sbjct: 1 MGDEDKRITYEDSEPSTGMNYTPSMHQEAQEETVMKLKGIDANEPTEGSILLKSSEKKLQ 60
Query: 61 ETPTEANHVQRLRQMLACPPHGLLDRVITNVTIIVLLWAVVWSITGSECLPGGNLFGIII 120
ETPTEANHVQRLRQMLACPPHGLLDRVITNVTIIVLLWAVVWSITGSECLPGGNLFGIII
Sbjct: 61 ETPTEANHVQRLRQMLACPPHGLLDRVITNVTIIVLLWAVVWSITGSECLPGGNLFGIII 120
Query: 121 LFYCAIIGGKLLGLIKLPTLPPLPSLLGMLLAGFLIRNIPVINDNVQIKHKWSSSLRSIA 180
LFYCAIIGGKLLGLIKLPTLPPLPSLLGMLLAGFLIRNIPVINDNVQIKHKWSSSLRSIA
Sbjct: 121 LFYCAIIGGKLLGLIKLPTLPPLPSLLGMLLAGFLIRNIPVINDNVQIKHKWSSSLRSIA 180
Query: 181 LSIILVRAGLGLDSKALKKLKGVCVRLSMGPCIVEACTSALLAHYLLGLPWQWGFILGFV 240
LSIILVRAGLGLDSKALKKLKGVCVRLSMGPCIVEACTSALLAHYLLGLPWQWGFILGFV
Sbjct: 181 LSIILVRAGLGLDSKALKKLKGVCVRLSMGPCIVEACTSALLAHYLLGLPWQWGFILGFV 240
Query: 241 LGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFDDILAITGFNTCLGIAFSTGSTV 300
LGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFDDILAITGFNTCLGIAFSTGSTV
Sbjct: 241 LGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFDDILAITGFNTCLGIAFSTGSTV 300
Query: 301 FNVLRGVLEVVIGVATGSVLGFFIQYFPSRDQDKLVCKRTFLVLGLSVLAVFSSVHFGFP 360
FNVLRGVLEVVIGVATGSVLGFFIQYFPSRDQDKLVCKRTFLVLGLSVLAVFSSVHFGFP
Sbjct: 301 FNVLRGVLEVVIGVATGSVLGFFIQYFPSRDQDKLVCKRTFLVLGLSVLAVFSSVHFGFP 360
Query: 361 GSGGLCTLVMAFLAGMGWTSEKAEVEKIIAVAWDIFQPLLFGLIGAEVSIASLRPETVGL 420
GSGGLCTLVMAFLAGMGWTSEKAEVEKIIAVAWDIFQPLLFGLIGAEVSIASLRPETVGL
Sbjct: 361 GSGGLCTLVMAFLAGMGWTSEKAEVEKIIAVAWDIFQPLLFGLIGAEVSIASLRPETVGL 420
Query: 421 CVATVGIAVLIRILTTFLMVCFAGFNLKEKIFISFAWLPKATVQAAIGSVALDTARSHGE 480
CVATVGIAVLIRILTTFLMVCFAGFNLKEKIFISFAWLPKATVQAAIGSVALDTARSHGE
Sbjct: 421 CVATVGIAVLIRILTTFLMVCFAGFNLKEKIFISFAWLPKATVQAAIGSVALDTARSHGE 480
Query: 481 KQLEDYGMDVLTVAFLSILITAPIGSLLIGLLGPRLLQKVEHQNKDEEVQGETSVQV 537
KQLEDYGMDVLTVAFLSILITAPIGSLLIGLLGPRLLQKVEHQNKDEEVQGETSVQV
Sbjct: 481 KQLEDYGMDVLTVAFLSILITAPIGSLLIGLLGPRLLQKVEHQNKDEEVQGETSVQV 537
>gi|66793392 Na+/H+ exchanger domain containing 1 isoform 1 [Homo
sapiens]
Length = 515
Score = 563 bits (1452), Expect = e-160
Identities = 274/466 (58%), Positives = 357/466 (76%), Gaps = 7/466 (1%)
Query: 60 QETPTEANHVQRLRQM------LACPPHGLLDRVITNVTIIVLLWAVVWSITGSECLPGG 113
+ET T + + ++ ++CP G+L+ +ITN I+ ++W + WSI GSE LPGG
Sbjct: 34 EETKTVLSDTEEIKPQTKKETYISCPLRGVLNVIITNGVILFVIWCMTWSILGSEALPGG 93
Query: 114 NLFGIIILFYCAIIGGKLLGLIKLPTLPPLPSLLGMLLAGFLIRNIPVINDNVQIKHKWS 173
NLFG+ I+FY AIIGGK+L LI++P +PPLP LLGMLLAGF IRN+P IN++V + + WS
Sbjct: 94 NLFGLFIIFYSAIIGGKILQLIRIPLVPPLPPLLGMLLAGFTIRNVPFINEHVHVPNTWS 153
Query: 174 SSLRSIALSIILVRAGLGLDSKALKKLKGVCVRLSMGPCIVEACTSALLAHYLLGLPWQW 233
S LRSIAL+IIL+RAGLGLD +AL+ LK VC RL++GPC++EA +A+ +H+++ PWQW
Sbjct: 154 SILRSIALTIILIRAGLGLDPQALRHLKVVCFRLAVGPCLMEASAAAVFSHFIMKFPWQW 213
Query: 234 GFILGFVLGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFDDILAITGFNTCLGIA 293
F+LGFVLGAVSPAVVVP M++LQ GYGVE+G+PTLLMAA S DDILAITGFNTCL I
Sbjct: 214 AFLLGFVLGAVSPAVVVPYMMVLQENGYGVEEGIPTLLMAASSMDDILAITGFNTCLSIV 273
Query: 294 FSTGSTVFNVLRGVLEVVIGVATGSVLGFFIQYFPSRDQDKLVCKRTFLVLGLSVLAVFS 353
FS+G + N + + V I + G VLGFF++YFPS DQ KL KR FLVL + V AV
Sbjct: 274 FSSGGILNNAIASIRNVCISLLAGIVLGFFVRYFPSEDQKKLTLKRGFLVLTMCVSAVLG 333
Query: 354 SVHFGFPGSGGLCTLVMAFLAGMGWTSEKAEVEKIIAVAWDIFQPLLFGLIGAEVSIASL 413
S G GSGGLCTLV++F+AG W+ EK +V+KII WDIFQPLLFGL+GAEVS++SL
Sbjct: 334 SQRIGLHGSGGLCTLVLSFIAGTKWSQEKMKVQKIITTVWDIFQPLLFGLVGAEVSVSSL 393
Query: 414 RPETVGLCVATVGIAVLIRILTTFLMVCFAGFNLKEKIFISFAWLPKATVQAAIGSVALD 473
VG+ VAT+ +A+ +RILTT+L++CFAGF+ KEKIFI+ AW+PKATVQA +G +AL+
Sbjct: 394 ESNIVGISVATLSLALCVRILTTYLLMCFAGFSFKEKIFIALAWMPKATVQAVLGPLALE 453
Query: 474 TARSHGEKQLEDYGMDVLTVAFLSILITAPIGSLLIGLLGPRLLQK 519
TAR LE Y DV+TVAFL+ILITAP G+LL+G+LGP++L +
Sbjct: 454 TARV-SAPHLEPYAKDVMTVAFLAILITAPNGALLMGILGPKMLTR 498
>gi|154937338 Na+/H+ exchanger domain containing 1 isoform 2 [Homo
sapiens]
Length = 475
Score = 508 bits (1307), Expect = e-144
Identities = 243/411 (59%), Positives = 315/411 (76%), Gaps = 6/411 (1%)
Query: 60 QETPTEANHVQRLRQM------LACPPHGLLDRVITNVTIIVLLWAVVWSITGSECLPGG 113
+ET T + + ++ ++CP G+L+ +ITN I+ ++W + WSI GSE LPGG
Sbjct: 34 EETKTVLSDTEEIKPQTKKETYISCPLRGVLNVIITNGVILFVIWCMTWSILGSEALPGG 93
Query: 114 NLFGIIILFYCAIIGGKLLGLIKLPTLPPLPSLLGMLLAGFLIRNIPVINDNVQIKHKWS 173
NLFG+ I+FY AIIGGK+L LI++P +PPLP LLGMLLAGF IRN+P IN++V + + WS
Sbjct: 94 NLFGLFIIFYSAIIGGKILQLIRIPLVPPLPPLLGMLLAGFTIRNVPFINEHVHVPNTWS 153
Query: 174 SSLRSIALSIILVRAGLGLDSKALKKLKGVCVRLSMGPCIVEACTSALLAHYLLGLPWQW 233
S LRSIAL+IIL+RAGLGLD +AL+ LK VC RL++GPC++EA +A+ +H+++ PWQW
Sbjct: 154 SILRSIALTIILIRAGLGLDPQALRHLKVVCFRLAVGPCLMEASAAAVFSHFIMKFPWQW 213
Query: 234 GFILGFVLGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFDDILAITGFNTCLGIA 293
F+LGFVLGAVSPAVVVP M++LQ GYGVE+G+PTLLMAA S DDILAITGFNTCL I
Sbjct: 214 AFLLGFVLGAVSPAVVVPYMMVLQENGYGVEEGIPTLLMAASSMDDILAITGFNTCLSIV 273
Query: 294 FSTGSTVFNVLRGVLEVVIGVATGSVLGFFIQYFPSRDQDKLVCKRTFLVLGLSVLAVFS 353
FS+G + N + + V I + G VLGFF++YFPS DQ KL KR FLVL + V AV
Sbjct: 274 FSSGGILNNAIASIRNVCISLLAGIVLGFFVRYFPSEDQKKLTLKRGFLVLTMCVSAVLG 333
Query: 354 SVHFGFPGSGGLCTLVMAFLAGMGWTSEKAEVEKIIAVAWDIFQPLLFGLIGAEVSIASL 413
S G GSGGLCTLV++F+AG W+ EK +V+KII WDIFQPLLFGL+GAEVS++SL
Sbjct: 334 SQRIGLHGSGGLCTLVLSFIAGTKWSQEKMKVQKIITTVWDIFQPLLFGLVGAEVSVSSL 393
Query: 414 RPETVGLCVATVGIAVLIRILTTFLMVCFAGFNLKEKIFISFAWLPKATVQ 464
VG+ VAT+ +A+ +RILTT+L++CFAGF+ KEKIFI+ AW+PKATVQ
Sbjct: 394 ESNIVGISVATLSLALCVRILTTYLLMCFAGFSFKEKIFIALAWMPKATVQ 444
>gi|169194717 PREDICTED: similar to Na+/H+ exchanger domain
containing 1 [Homo sapiens]
Length = 271
Score = 313 bits (801), Expect = 3e-85
Identities = 158/286 (55%), Positives = 198/286 (69%), Gaps = 23/286 (8%)
Query: 100 VVWSITGSECLPGGNLFGIIILFYCAIIGGKLLGLIKLPTLPPLPSLLGMLLAGFLIRNI 159
+ WSI GSE LPGGNLFG++I+FY AIIGGK L LI++P +PP P LLGMLLAGF IRN+
Sbjct: 1 MTWSILGSEALPGGNLFGLLIIFYSAIIGGKNLQLIRIPLVPPFPPLLGMLLAGFTIRNV 60
Query: 160 PVINDNVQIKHKWSSSLRSIALSIILVRAGLGLDSKALKKLKGVCVRLSMGPCIVEACTS 219
P IN++V + + WSS LRSIAL+IIL+RAGLGLD +A + LK VC RL++GPC++EA +
Sbjct: 61 PFINEHVHVPNAWSSILRSIALNIILIRAGLGLDPQAWRHLKVVCFRLAVGPCLMEASAA 120
Query: 220 ALLAHYLLGLPWQWGFILGFVLGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFDD 279
A+ +H+++ PWQW +LGFVLGAVSP VVV M++LQ GYGVE+ +PTLLMAA S DD
Sbjct: 121 AVFSHFIMKFPWQWAILLGFVLGAVSPVVVVLYMMVLQENGYGVEEDIPTLLMAASSMDD 180
Query: 280 ILAITGFNTCLGIAFSTGSTVFNVLRGVLEVVIGVATGSVLGFFIQYFPSRDQDKLVCKR 339
ILAITGFNTCL I F +G + N + + KL KR
Sbjct: 181 ILAITGFNTCLSIVFFSGGMLNNAIASI-----------------------RNKKLTLKR 217
Query: 340 TFLVLGLSVLAVFSSVHFGFPGSGGLCTLVMAFLAGMGWTSEKAEV 385
FLVL V AV SS G GSGGLCTLV++F+AG W+ EK +
Sbjct: 218 GFLVLTTCVSAVLSSQRIGLHGSGGLCTLVLSFIAGTKWSQEKVNI 263
>gi|169194736 PREDICTED: similar to hCG1988827 [Homo sapiens]
Length = 92
Score = 69.3 bits (168), Expect = 8e-12
Identities = 32/44 (72%), Positives = 37/44 (84%)
Query: 254 LLLQGGGYGVEKGVPTLLMAAGSFDDILAITGFNTCLGIAFSTG 297
++LQ GYGVE+ +PTLLMAA S DDILAITGFNTCL I FS+G
Sbjct: 1 MVLQENGYGVEEDIPTLLMAASSMDDILAITGFNTCLSIVFSSG 44
>gi|89030918 PREDICTED: similar to hCG1988827 [Homo sapiens]
Length = 92
Score = 69.3 bits (168), Expect = 8e-12
Identities = 32/44 (72%), Positives = 37/44 (84%)
Query: 254 LLLQGGGYGVEKGVPTLLMAAGSFDDILAITGFNTCLGIAFSTG 297
++LQ GYGVE+ +PTLLMAA S DDILAITGFNTCL I FS+G
Sbjct: 1 MVLQENGYGVEEDIPTLLMAASSMDDILAITGFNTCLSIVFSSG 44
>gi|13540547 solute carrier family 2 member 10 [Homo sapiens]
Length = 541
Score = 34.3 bits (77), Expect = 0.29
Identities = 44/163 (26%), Positives = 65/163 (39%), Gaps = 33/163 (20%)
Query: 116 FGIIILFYCAIIGGKLLGLIKLPTLPPLPSLLGMLLAGFLI----RNIPVINDNV----- 166
FG+ L ++G LLG +LL L+ GFLI R ++ N+
Sbjct: 40 FGLSCLEQEFLVGSLLLG-----------ALLASLVGGFLIDCYGRKQAILGSNLVLLAG 88
Query: 167 QIKHKWSSSLRSIALSIILVRAGLGLDSKAL---------KKLKGVCVRLSMGPCIVEAC 217
+ + SL + L +V + L S A + +GV V L V
Sbjct: 89 SLTLGLAGSLAWLVLGRAVVGFAISLSSMACCIYVSELVGPRQRGVLVSLYEAGITVGIL 148
Query: 218 TSALLAHYLLGLPWQWGFILGFVLGAVSPAVVVP-SMLLLQGG 259
S L + L G PW W + G+ A +PAV+ S+L L G
Sbjct: 149 LSYALNYALAGTPWGWRHMFGW---ATAPAVLQSLSLLFLPAG 188
>gi|8394402 taste receptor T2R4 [Homo sapiens]
Length = 299
Score = 32.3 bits (72), Expect = 1.1
Identities = 22/69 (31%), Positives = 31/69 (44%), Gaps = 17/69 (24%)
Query: 267 VPTLLMAAGSFDDILAITGFNTCLGIAFSTGS-----------TVFNVLRGVLEVVIGVA 315
+P LL+A + I+ F TCL I S S T FN+ G+L +V+ +
Sbjct: 129 IPRLLLAC------VLISAFTTCLYITLSQASPFPELVTTRNNTSFNISEGILSLVVSLV 182
Query: 316 TGSVLGFFI 324
S L F I
Sbjct: 183 LSSSLQFII 191
>gi|4758012 clathrin heavy chain 1 [Homo sapiens]
Length = 1675
Score = 30.8 bits (68), Expect = 3.3
Identities = 24/103 (23%), Positives = 38/103 (36%), Gaps = 12/103 (11%)
Query: 2 GDEDKRITYEDSEPSTGMNYTPSMHQE---AQEETVMKLKGIDANEPTEGSILLKSSEKK 58
G + ++ +D EP + + E Q+ T L + N P+EG + + E
Sbjct: 529 GQQFAQMLVQDEEPLADITQIVDVFMEYNLIQQCTAFLLDALKNNRPSEGPLQTRLLEMN 588
Query: 59 LQETPTEAN---------HVQRLRQMLACPPHGLLDRVITNVT 92
L P A+ H R C GLL R + + T
Sbjct: 589 LMHAPQVADAILGNQMFTHYDRAHIAQLCEKAGLLQRALEHFT 631
>gi|59806361 hypothetical protein LOC387104 [Homo sapiens]
Length = 947
Score = 30.4 bits (67), Expect = 4.3
Identities = 21/66 (31%), Positives = 32/66 (48%), Gaps = 3/66 (4%)
Query: 4 EDKRITYEDSEPSTGMNYTP-SMHQEAQEETVMKLKGIDANEPTEGSILLKSSEKKLQET 62
E+KR T ED + ++A + + K+K + GS L SEKK Q+T
Sbjct: 459 EEKRTTTEDENEKLRQQLIEVEIAKQALQNELEKMKELSLKR--RGSKDLPKSEKKAQQT 516
Query: 63 PTEANH 68
PTE ++
Sbjct: 517 PTEEDN 522
>gi|94721259 solute carrier family 26, member 6 isoform 4 [Homo
sapiens]
Length = 738
Score = 29.6 bits (65), Expect = 7.3
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 13/145 (8%)
Query: 220 ALLAHYLLGLPWQWGF-ILGFVLGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFD 278
ALL +L L W + + ++LG + + V M L QG Y + G+P + SF
Sbjct: 48 ALLLQHLPVLVWLPRYPVRDWLLGDLLSGLSVAIMQLPQGLAYALLAGLPPVFGLYSSFY 107
Query: 279 DILAITGFNTCLGIAFSTGSTVFNVLRGVLEVVIGVATGSV----LGFFIQYFPSRDQDK 334
+ F T I+ T + V+ V++G T S+ L + +RD +
Sbjct: 108 PVFIYFLFGTSRHISVGTFA--------VMSVMVGSVTESLAPQALNDSMINETARDAAR 159
Query: 335 LVCKRTFLVLGLSVLAVFSSVHFGF 359
+ T VL +HFGF
Sbjct: 160 VQVASTLSVLVGLFQVGLGLIHFGF 184
>gi|94721257 solute carrier family 26, member 6 isoform 3 [Homo
sapiens]
Length = 740
Score = 29.6 bits (65), Expect = 7.3
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 13/145 (8%)
Query: 220 ALLAHYLLGLPWQWGF-ILGFVLGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFD 278
ALL +L L W + + ++LG + + V M L QG Y + G+P + SF
Sbjct: 69 ALLLQHLPVLVWLPRYPVRDWLLGDLLSGLSVAIMQLPQGLAYALLAGLPPVFGLYSSFY 128
Query: 279 DILAITGFNTCLGIAFSTGSTVFNVLRGVLEVVIGVATGSV----LGFFIQYFPSRDQDK 334
+ F T I+ T + V+ V++G T S+ L + +RD +
Sbjct: 129 PVFIYFLFGTSRHISVGTFA--------VMSVMVGSVTESLAPQALNDSMINETARDAAR 180
Query: 335 LVCKRTFLVLGLSVLAVFSSVHFGF 359
+ T VL +HFGF
Sbjct: 181 VQVASTLSVLVGLFQVGLGLIHFGF 205
>gi|94721255 solute carrier family 26, member 6 isoform 2 [Homo
sapiens]
Length = 758
Score = 29.6 bits (65), Expect = 7.3
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 13/145 (8%)
Query: 220 ALLAHYLLGLPWQWGF-ILGFVLGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFD 278
ALL +L L W + + ++LG + + V M L QG Y + G+P + SF
Sbjct: 69 ALLLQHLPVLVWLPRYPVRDWLLGDLLSGLSVAIMQLPQGLAYALLAGLPPVFGLYSSFY 128
Query: 279 DILAITGFNTCLGIAFSTGSTVFNVLRGVLEVVIGVATGSV----LGFFIQYFPSRDQDK 334
+ F T I+ T + V+ V++G T S+ L + +RD +
Sbjct: 129 PVFIYFLFGTSRHISVGTFA--------VMSVMVGSVTESLAPQALNDSMINETARDAAR 180
Query: 335 LVCKRTFLVLGLSVLAVFSSVHFGF 359
+ T VL +HFGF
Sbjct: 181 VQVASTLSVLVGLFQVGLGLIHFGF 205
>gi|94721253 solute carrier family 26, member 6 isoform 1 [Homo
sapiens]
Length = 759
Score = 29.6 bits (65), Expect = 7.3
Identities = 37/145 (25%), Positives = 59/145 (40%), Gaps = 13/145 (8%)
Query: 220 ALLAHYLLGLPWQWGF-ILGFVLGAVSPAVVVPSMLLLQGGGYGVEKGVPTLLMAAGSFD 278
ALL +L L W + + ++LG + + V M L QG Y + G+P + SF
Sbjct: 69 ALLLQHLPVLVWLPRYPVRDWLLGDLLSGLSVAIMQLPQGLAYALLAGLPPVFGLYSSFY 128
Query: 279 DILAITGFNTCLGIAFSTGSTVFNVLRGVLEVVIGVATGSV----LGFFIQYFPSRDQDK 334
+ F T I+ T + V+ V++G T S+ L + +RD +
Sbjct: 129 PVFIYFLFGTSRHISVGTFA--------VMSVMVGSVTESLAPQALNDSMINETARDAAR 180
Query: 335 LVCKRTFLVLGLSVLAVFSSVHFGF 359
+ T VL +HFGF
Sbjct: 181 VQVASTLSVLVGLFQVGLGLIHFGF 205
>gi|91208428 protein tyrosine phosphatase, receptor-type, zeta1
precursor [Homo sapiens]
Length = 2315
Score = 29.3 bits (64), Expect = 9.5
Identities = 17/53 (32%), Positives = 25/53 (47%)
Query: 3 DEDKRITYEDSEPSTGMNYTPSMHQEAQEETVMKLKGIDANEPTEGSILLKSS 55
+ED R+T S+ TGM+ +P A + G + N+ GS LL S
Sbjct: 1482 EEDNRVTSVSSDSQTGMDRSPGKSPSANGLSQKHNDGKEENDIQTGSALLPLS 1534
>gi|50726952 retinol dehydrogenase 5 (11-cis and 9-cis) [Homo
sapiens]
Length = 318
Score = 29.3 bits (64), Expect = 9.5
Identities = 15/39 (38%), Positives = 21/39 (53%), Gaps = 2/39 (5%)
Query: 96 LLWAVVWSITGSECLPGGNLFGIIILFYCAIIGGKLLGL 134
LLWAV+W + + LP N F + + C G+LL L
Sbjct: 10 LLWAVLWLLRDRQSLPASNAF--VFITGCDSGFGRLLAL 46
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.141 0.420
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 19,676,921
Number of Sequences: 37866
Number of extensions: 859165
Number of successful extensions: 1894
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1883
Number of HSP's gapped (non-prelim): 17
length of query: 537
length of database: 18,247,518
effective HSP length: 107
effective length of query: 430
effective length of database: 14,195,856
effective search space: 6104218080
effective search space used: 6104218080
T: 11
A: 40
X1: 16 ( 7.5 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.