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Search of human proteins with 46275835
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|46275835 hypothetical protein LOC404636 [Homo sapiens]
(357 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|46275835 hypothetical protein LOC404636 [Homo sapiens] 713 0.0
gi|122937185 hypothetical protein LOC57189 [Homo sapiens] 40 0.003
gi|226246554 hypothetical protein LOC643677 [Homo sapiens] 30 4.3
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap... 30 4.3
gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap... 30 4.3
gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap... 30 4.3
gi|94721327 basonuclin 2 [Homo sapiens] 29 5.7
gi|21450863 attractin isoform 2 [Homo sapiens] 29 7.4
gi|21450861 attractin isoform 1 [Homo sapiens] 29 7.4
gi|109240536 DC-STAMP domain containing 2 [Homo sapiens] 29 7.4
gi|57529131 AVL9 homolog (S. cerevisiase) [Homo sapiens] 29 7.4
gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens] 28 9.7
gi|115529449 upstream binding transcription factor, RNA polymera... 28 9.7
gi|115529451 upstream binding transcription factor, RNA polymera... 28 9.7
gi|7657671 upstream binding transcription factor, RNA polymerase... 28 9.7
>gi|46275835 hypothetical protein LOC404636 [Homo sapiens]
Length = 357
Score = 713 bits (1840), Expect = 0.0
Identities = 357/357 (100%), Positives = 357/357 (100%)
Query: 1 MAAAEVADTQLMLGVGLIEKDTNGEVLWVWCYPSTTATLRNLLLRKCCLTDENKLLHPFV 60
MAAAEVADTQLMLGVGLIEKDTNGEVLWVWCYPSTTATLRNLLLRKCCLTDENKLLHPFV
Sbjct: 1 MAAAEVADTQLMLGVGLIEKDTNGEVLWVWCYPSTTATLRNLLLRKCCLTDENKLLHPFV 60
Query: 61 FGQYRRTWFYITTIEVPDSSILKKVTHFSIVLTAKDFNPEKYAAFTRILCRMYLKHGSPV 120
FGQYRRTWFYITTIEVPDSSILKKVTHFSIVLTAKDFNPEKYAAFTRILCRMYLKHGSPV
Sbjct: 61 FGQYRRTWFYITTIEVPDSSILKKVTHFSIVLTAKDFNPEKYAAFTRILCRMYLKHGSPV 120
Query: 121 KMMESYIAVLTKGICQSEENGSFLSKDFDARKAYLAGSIKDIVSQFGMETVILHTALMLK 180
KMMESYIAVLTKGICQSEENGSFLSKDFDARKAYLAGSIKDIVSQFGMETVILHTALMLK
Sbjct: 121 KMMESYIAVLTKGICQSEENGSFLSKDFDARKAYLAGSIKDIVSQFGMETVILHTALMLK 180
Query: 181 KRIVVYHPKIEAVQEFTRTLPALVWHRQDWTILHSYVHLNADELEALQMCTGYVAGFVDL 240
KRIVVYHPKIEAVQEFTRTLPALVWHRQDWTILHSYVHLNADELEALQMCTGYVAGFVDL
Sbjct: 181 KRIVVYHPKIEAVQEFTRTLPALVWHRQDWTILHSYVHLNADELEALQMCTGYVAGFVDL 240
Query: 241 EVSNRPDLYDVFVNLAESEITIAPLAKEAMAMGKLHKEMGQLIVQSAEDPEKSESHVIQD 300
EVSNRPDLYDVFVNLAESEITIAPLAKEAMAMGKLHKEMGQLIVQSAEDPEKSESHVIQD
Sbjct: 241 EVSNRPDLYDVFVNLAESEITIAPLAKEAMAMGKLHKEMGQLIVQSAEDPEKSESHVIQD 300
Query: 301 IALKTREIFTNLAPFSEVSADGEKRVLNLEALKQKRFPPATENFLYHLAAAEQMLKI 357
IALKTREIFTNLAPFSEVSADGEKRVLNLEALKQKRFPPATENFLYHLAAAEQMLKI
Sbjct: 301 IALKTREIFTNLAPFSEVSADGEKRVLNLEALKQKRFPPATENFLYHLAAAEQMLKI 357
>gi|122937185 hypothetical protein LOC57189 [Homo sapiens]
Length = 455
Score = 40.0 bits (92), Expect = 0.003
Identities = 53/217 (24%), Positives = 90/217 (41%), Gaps = 29/217 (13%)
Query: 156 AGSIKDIVSQFGMETVILHTALMLKKRIVVYHPKIEAVQEF---------TRTLPALVWH 206
AG + + FG + +IL +L+KRI+++ P V + +LP +
Sbjct: 232 AGCMSQFIKFFGEQILILWKFALLRKRILIFSPPPVGVVCYRVYCCCCLANVSLPGI--- 288
Query: 207 RQDWTILHS--YVHLNADELEALQMCTGYVAGFVDLEVSNRPDLYDVFV---NLAESEIT 261
TI S + ++N ++E+L++ YVA + + +LYDV+V N+
Sbjct: 289 --GGTIPESKPFFYVNVADIESLEVEVSYVACTTEKIFEEKRELYDVYVDNQNVKTHHDH 346
Query: 262 IAPLAKEAMAMGKLHK---EMGQLIVQSAEDPEK----SESHVIQDIALKTREIFTNLAP 314
+ PL K A + ++ E Q+++ S E E E + + IF L
Sbjct: 347 LQPLLKINSADREKYRRLNEQRQMLLYSQEVEEDYNPCEEDLFVLFFLEQNNRIFQTLL- 405
Query: 315 FSEVSADGEKRVLNLEALKQKRFPPATENFLYHLAAA 351
EVSA +K + A P +FL L A
Sbjct: 406 --EVSASQDKTLTAEHARGMGLDPQGDRSFLLDLLEA 440
>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
Length = 7081
Score = 29.6 bits (65), Expect = 4.3
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 272 MGKLHKEMGQLIVQSAEDPE----KSESHVIQDIALKTREIFTNLAPFSEVSADGEKRV- 326
M ++ K+ + +S PE K+E + I LKT+E+ N++ E + +GE +
Sbjct: 4630 MAQIQKDKANISEKSVMHPEYIAVKAEKSPLSHI-LKTKELQVNISQQGEKAQEGEVEIV 4688
Query: 327 ---------------LNLEALKQKRFPP-ATENFLYHLAAAEQM 354
L L+++K++ P T +F+ HL E +
Sbjct: 4689 VLLSKTCPFVTSSAFLELDSIKEEEGEPRITRSFMPHLEIQESL 4732
>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 29.6 bits (65), Expect = 4.3
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 272 MGKLHKEMGQLIVQSAEDPE----KSESHVIQDIALKTREIFTNLAPFSEVSADGEKRV- 326
M ++ K+ + +S PE K+E + I LKT+E+ N++ E + +GE +
Sbjct: 4478 MAQIQKDKANISEKSVMHPEYIAVKAEKSPLSHI-LKTKELQVNISQQGEKAQEGEVEIV 4536
Query: 327 ---------------LNLEALKQKRFPP-ATENFLYHLAAAEQM 354
L L+++K++ P T +F+ HL E +
Sbjct: 4537 VLLSKTCPFVTSSAFLELDSIKEEEGEPRITRSFMPHLEIQESL 4580
>gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 29.6 bits (65), Expect = 4.3
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 272 MGKLHKEMGQLIVQSAEDPE----KSESHVIQDIALKTREIFTNLAPFSEVSADGEKRV- 326
M ++ K+ + +S PE K+E + I LKT+E+ N++ E + +GE +
Sbjct: 4478 MAQIQKDKANISEKSVMHPEYIAVKAEKSPLSHI-LKTKELQVNISQQGEKAQEGEVEIV 4536
Query: 327 ---------------LNLEALKQKRFPP-ATENFLYHLAAAEQM 354
L L+++K++ P T +F+ HL E +
Sbjct: 4537 VLLSKTCPFVTSSAFLELDSIKEEEGEPRITRSFMPHLEIQESL 4580
>gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
Length = 6929
Score = 29.6 bits (65), Expect = 4.3
Identities = 25/104 (24%), Positives = 47/104 (45%), Gaps = 22/104 (21%)
Query: 272 MGKLHKEMGQLIVQSAEDPE----KSESHVIQDIALKTREIFTNLAPFSEVSADGEKRV- 326
M ++ K+ + +S PE K+E + I LKT+E+ N++ E + +GE +
Sbjct: 4478 MAQIQKDKANISEKSVMHPEYIAVKAEKSPLSHI-LKTKELQVNISQQGEKAQEGEVEIV 4536
Query: 327 ---------------LNLEALKQKRFPP-ATENFLYHLAAAEQM 354
L L+++K++ P T +F+ HL E +
Sbjct: 4537 VLLSKTCPFVTSSAFLELDSIKEEEGEPRITRSFMPHLEIQESL 4580
>gi|94721327 basonuclin 2 [Homo sapiens]
Length = 1099
Score = 29.3 bits (64), Expect = 5.7
Identities = 15/56 (26%), Positives = 32/56 (57%), Gaps = 1/56 (1%)
Query: 257 ESEITIAPLAKEAMAMGK-LHKEMGQLIVQSAEDPEKSESHVIQDIALKTREIFTN 311
ESE + L +E+M + +H E+ + ++ ++E P+++ S +K +E FT+
Sbjct: 725 ESESSEPKLGEESMEGDEHIHSEVSEKVLMNSERPDENHSEPSHQDVIKVKEEFTD 780
>gi|21450863 attractin isoform 2 [Homo sapiens]
Length = 1272
Score = 28.9 bits (63), Expect = 7.4
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 158 SIKDIVSQFGMETVILHTALMLKKRIVVYHPKIEAVQEFTRTLPALVWHRQDWTIL 213
S+ ++V ++G H+ + K +I +Y KI++ T L H + W +L
Sbjct: 385 SVNNVVVRYG------HSLALYKDKIYMYGGKIDSTGNVTNELRVFHIHNESWVLL 434
>gi|21450861 attractin isoform 1 [Homo sapiens]
Length = 1429
Score = 28.9 bits (63), Expect = 7.4
Identities = 14/56 (25%), Positives = 27/56 (48%), Gaps = 6/56 (10%)
Query: 158 SIKDIVSQFGMETVILHTALMLKKRIVVYHPKIEAVQEFTRTLPALVWHRQDWTIL 213
S+ ++V ++G H+ + K +I +Y KI++ T L H + W +L
Sbjct: 385 SVNNVVVRYG------HSLALYKDKIYMYGGKIDSTGNVTNELRVFHIHNESWVLL 434
>gi|109240536 DC-STAMP domain containing 2 [Homo sapiens]
Length = 773
Score = 28.9 bits (63), Expect = 7.4
Identities = 20/62 (32%), Positives = 31/62 (50%), Gaps = 1/62 (1%)
Query: 266 AKEAMAMG-KLHKEMGQLIVQSAEDPEKSESHVIQDIALKTREIFTNLAPFSEVSADGEK 324
A EA+A G +L ++Q A+ P S + I+ IA KT+E+ + F DG K
Sbjct: 119 ASEAVACGAELALNQTAEVLQRAKQPLVSALNKIKAIARKTKEVADRVRKFFRSIMDGVK 178
Query: 325 RV 326
+
Sbjct: 179 HI 180
>gi|57529131 AVL9 homolog (S. cerevisiase) [Homo sapiens]
Length = 648
Score = 28.9 bits (63), Expect = 7.4
Identities = 16/71 (22%), Positives = 33/71 (46%), Gaps = 4/71 (5%)
Query: 140 NGSFLSKDFDARKAYLAGSIKDIVSQFGMETVILHTALMLKKRIVVY----HPKIEAVQE 195
N S + + YL S +D+V F + +IL ++L+K+++ Y + + A+
Sbjct: 161 NSSLGGASLEGSQVYLGLSPRDLVLHFRHKVLILFKLILLEKKVLFYISPVNKLVGALMT 220
Query: 196 FTRTLPALVWH 206
P ++ H
Sbjct: 221 VLSLFPGMIEH 231
>gi|153792694 baculoviral IAP repeat-containing 6 [Homo sapiens]
Length = 4857
Score = 28.5 bits (62), Expect = 9.7
Identities = 19/72 (26%), Positives = 34/72 (47%), Gaps = 3/72 (4%)
Query: 262 IAPLAKEAMAMGKLHKEMGQLIVQSAEDPEKSESHVIQDIALKTREIFTNLAPFSEVSAD 321
+AP+A EAM G + ++G S + ++S +++ I T P S + D
Sbjct: 2421 LAPVAAEAMEEGTVGDDVGATAGDSDDSLQQSSVQLLETIDEPLTHDITGAPPLSSLEKD 2480
Query: 322 GEKRVLNLEALK 333
E ++LE L+
Sbjct: 2481 KE---IDLELLQ 2489
>gi|115529449 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 28.5 bits (62), Expect = 9.7
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 274 KLHKEMGQLIVQSA------EDPEKSESHVIQDIALKTREIFTNLAPFSEVSAD 321
KLH EM L + E PEK + IQD + +E NLA F E D
Sbjct: 132 KLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPD 185
>gi|115529451 upstream binding transcription factor, RNA polymerase
I isoform b [Homo sapiens]
Length = 727
Score = 28.5 bits (62), Expect = 9.7
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 274 KLHKEMGQLIVQSA------EDPEKSESHVIQDIALKTREIFTNLAPFSEVSAD 321
KLH EM L + E PEK + IQD + +E NLA F E D
Sbjct: 132 KLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPD 185
>gi|7657671 upstream binding transcription factor, RNA polymerase I
isoform a [Homo sapiens]
Length = 764
Score = 28.5 bits (62), Expect = 9.7
Identities = 20/54 (37%), Positives = 24/54 (44%), Gaps = 6/54 (11%)
Query: 274 KLHKEMGQLIVQSA------EDPEKSESHVIQDIALKTREIFTNLAPFSEVSAD 321
KLH EM L + E PEK + IQD + +E NLA F E D
Sbjct: 132 KLHPEMSNLDLTKILSKKYKELPEKKKMKYIQDFQREKQEFERNLARFREDHPD 185
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.396
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,018,031
Number of Sequences: 37866
Number of extensions: 468828
Number of successful extensions: 1014
Number of sequences better than 10.0: 15
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 13
Number of HSP's that attempted gapping in prelim test: 1012
Number of HSP's gapped (non-prelim): 15
length of query: 357
length of database: 18,247,518
effective HSP length: 103
effective length of query: 254
effective length of database: 14,347,320
effective search space: 3644219280
effective search space used: 3644219280
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.