Guide to the Human Genome
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Name: PAPSS1 Sequence: fasta or formatted (624aa) NCBI GI: 46094058
Description:

3'-phosphoadenosine 5'-phosphosulfate synthase 1

Referenced in:

Protein Glycosylation

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             7.4         46           2
 C cysteine            2.2         14           1
 D aspartate           5.6         35           3
 E glutamate           7.7         48           2
 F phenylalanine       3.5         22           2
 G glycine             7.4         46           2
 H histidine           3.2         20           2
 I isoleucine          3.4         21           1
 K lysine              6.2         39           4
 L leucine             9.5         59           3
 M methionine          3.2         20           2
 N asparagine          4.0         25           2
 P proline             5.3         33           2
 Q glutamine           4.0         25           2
 R arginine            6.1         38           2
 S serine              2.9         18           1
 T threonine           5.3         33           2
 V valine              7.9         49           2
 W tryptophan          1.8         11           1
 Y tyrosine            3.5         22           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   3'-phosphoadenosine 5'-phosphosulfate synthase 1 [Ho... 
PAPSS2                0.778   3'-phosphoadenosine 5'-phosphosulfate synthase 2 iso...
PAPSS2                0.775   3'-phosphoadenosine 5'-phosphosulfate synthase 2 iso...
C1orf57               0.006   nucleoside-triphosphatase C1orf57 
ABCB6                 0.005   ATP-binding cassette, sub-family B, member 6 
SLC6A15               0.005   solute carrier family 6, member 15 isoform 1 
SLC6A15               0.005   solute carrier family 6, member 15 isoform 3 
RAB33B                0.005   RAB33B, member RAS oncogene family 
MCM3                  0.005   minichromosome maintenance complex component 3 
ITGAM                 0.004   integrin alpha M isoform 1 precursor 
ITGAM                 0.004   integrin alpha M isoform 2 precursor 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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