Search of human proteins with 13129120

Search of human proteins with 13129120

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|13129120 trafficking protein particle complex 6A [Homo
sapiens]
         (173 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|13129120 trafficking protein particle complex 6A [Homo sapiens]    346   5e-96
gi|118600991 trafficking protein particle complex 6B isoform 1 [...   178   2e-45
gi|28976154 trafficking protein particle complex 6B isoform 2 [H...   130   7e-31
gi|119964728 D-2-hydroxyglutarate dehydrogenase precursor [Homo ...    31   0.61 
gi|212720946 BET3 like [Homo sapiens]                                  28   3.0  
gi|31742498 unc-84 homolog B [Homo sapiens]                            28   4.0  
gi|24308211 integrator complex subunit 2 [Homo sapiens]                28   5.2  
gi|21735552 mitogen-activated protein kinase kinase kinase 12 [H...    27   6.7  
gi|111548654 hypothetical protein LOC51057 isoform 1 [Homo sapiens]    27   8.8  
gi|111548652 hypothetical protein LOC51057 isoform 2 [Homo sapiens]    27   8.8  

>gi|13129120 trafficking protein particle complex 6A [Homo sapiens]
          Length = 173

 Score =  346 bits (888), Expect = 5e-96
 Identities = 173/173 (100%), Positives = 173/173 (100%)

Query: 1   MADTVLFEFLHTEMVAELWAHDPDPGPGVSAGLRGEEAGATKGQKMSLSVLEGMGFRVGQ 60
           MADTVLFEFLHTEMVAELWAHDPDPGPGVSAGLRGEEAGATKGQKMSLSVLEGMGFRVGQ
Sbjct: 1   MADTVLFEFLHTEMVAELWAHDPDPGPGVSAGLRGEEAGATKGQKMSLSVLEGMGFRVGQ 60

Query: 61  ALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPM 120
           ALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPM
Sbjct: 61  ALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPM 120

Query: 121 ASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVIPKS 173
           ASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVIPKS
Sbjct: 121 ASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVIPKS 173


>gi|118600991 trafficking protein particle complex 6B isoform 1
           [Homo sapiens]
          Length = 158

 Score =  178 bits (452), Expect = 2e-45
 Identities = 90/172 (52%), Positives = 118/172 (68%), Gaps = 15/172 (8%)

Query: 1   MADTVLFEFLHTEMVAELWAHDPDPGPGVSAGLRGEEAGATKGQKMSLSVLEGMGFRVGQ 60
           MAD  LF  LH EMV+ ++              +  E G  +  +  ++ LE MGFRVGQ
Sbjct: 1   MADEALFLLLHNEMVSGVY--------------KSAEQGEVENGRC-ITKLENMGFRVGQ 45

Query: 61  ALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPM 120
            L ER  ++T  F++ELD++KF+CKD W  VF+KQ+D+LRTNHQG YVLQDN F LL  M
Sbjct: 46  GLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQGIYVLQDNKFRLLTQM 105

Query: 121 ASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVIPK 172
           ++G QYLE A K+LAFTCGL+RG L  LGI+S+VTA V+++P CKFQV+I K
Sbjct: 106 SAGKQYLEHASKYLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQK 157


>gi|28976154 trafficking protein particle complex 6B isoform 2 [Homo
           sapiens]
          Length = 130

 Score =  130 bits (326), Expect = 7e-31
 Identities = 72/172 (41%), Positives = 98/172 (56%), Gaps = 43/172 (25%)

Query: 1   MADTVLFEFLHTEMVAELWAHDPDPGPGVSAGLRGEEAGATKGQKMSLSVLEGMGFRVGQ 60
           MAD  LF  LH EMV+ ++              +  E G  +  +  ++ LE MGFRVGQ
Sbjct: 1   MADEALFLLLHNEMVSGVY--------------KSAEQGEVENGRC-ITKLENMGFRVGQ 45

Query: 61  ALGERLPRETLAFREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTYVLQDNSFPLLLPM 120
            L ER  ++T  F++ELD++KF+CKD W  VF+KQ+D+LRTNHQ                
Sbjct: 46  GLIERFTKDTARFKDELDIMKFICKDFWTTVFKKQIDNLRTNHQ---------------- 89

Query: 121 ASGLQYLEEAPKFLAFTCGLLRGALYTLGIESVVTASVAALPVCKFQVVIPK 172
                       +LAFTCGL+RG L  LGI+S+VTA V+++P CKFQV+I K
Sbjct: 90  ------------YLAFTCGLIRGGLSNLGIKSIVTAEVSSMPACKFQVMIQK 129


>gi|119964728 D-2-hydroxyglutarate dehydrogenase precursor [Homo
           sapiens]
          Length = 521

 Score = 30.8 bits (68), Expect = 0.61
 Identities = 22/71 (30%), Positives = 31/71 (43%), Gaps = 6/71 (8%)

Query: 10  LHTEMVAELWAHDPDPGPGVSAGLRGEEAGATKGQKMSLSVLEGMGFRVGQALGERLPRE 69
           LH  + AE ++      P + A L       T GQ+ S+S   G+GFR    LG   P  
Sbjct: 440 LHLNVTAEAFS------PSLLAALEPHVYEWTAGQQGSVSAEHGVGFRKRDVLGYSKPPG 493

Query: 70  TLAFREELDVL 80
            L   ++L  L
Sbjct: 494 ALQLMQQLKAL 504


>gi|212720946 BET3 like [Homo sapiens]
          Length = 181

 Score = 28.5 bits (62), Expect = 3.0
 Identities = 25/114 (21%), Positives = 51/114 (44%), Gaps = 24/114 (21%)

Query: 57  RVGQALGERLPRETLA---------FREELDVLKFLCKDLWVAVFQKQMDSLRTNHQGTY 107
           ++G  +G RL  + LA         + E +D++  +   +++ +      S+  N+    
Sbjct: 46  KMGYGIGTRLVEDFLARSCVGRCHSYSEIIDIIAQVAFKMYLGI----TPSVTCNNSSK- 100

Query: 108 VLQDNSFPLLLPMASGLQYLEEAPK------FLAFTCGLLRGALYTLGIESVVT 155
               N F L+L     ++++EE P       +    CG++RGAL  + + + VT
Sbjct: 101 ----NEFSLILEKNPLVEFVEELPAGRSSLCYCNLLCGIIRGALEMVHLAADVT 150


>gi|31742498 unc-84 homolog B [Homo sapiens]
          Length = 717

 Score = 28.1 bits (61), Expect = 4.0
 Identities = 19/51 (37%), Positives = 27/51 (52%), Gaps = 1/51 (1%)

Query: 32  GLRGEEAGATKGQKMSLSVLEGMGFRVGQALGERLPRETLA-FREELDVLK 81
           G  G+  G     + +L++LEG+  R   AL E   RET A  +EEL  L+
Sbjct: 313 GAPGQGGGGGLSHEDTLALLEGLVSRREAALKEDFRRETAARIQEELSALR 363


>gi|24308211 integrator complex subunit 2 [Homo sapiens]
          Length = 1204

 Score = 27.7 bits (60), Expect = 5.2
 Identities = 12/23 (52%), Positives = 14/23 (60%)

Query: 63  GERLPRETLAFREELDVLKFLCK 85
           GER   E+L  R   D L+FLCK
Sbjct: 233 GERQDEESLGGRRRTDALRFLCK 255


>gi|21735552 mitogen-activated protein kinase kinase kinase 12 [Homo
           sapiens]
          Length = 859

 Score = 27.3 bits (59), Expect = 6.7
 Identities = 23/81 (28%), Positives = 34/81 (41%), Gaps = 2/81 (2%)

Query: 18  LWAHDPDPG-PGVSAGLRGEEAGATKGQKMSLSVLEGMGFRVGQALGERLPRETLAFREE 76
           L  H+ D G PG +AG     A   +  ++ L    G GF  G   G   P  T+  +  
Sbjct: 48  LQLHEQDAGGPGGAAGSPESRASRVRADEVRLQCQSGSGFLEG-LFGCLRPVWTMIGKAY 106

Query: 77  LDVLKFLCKDLWVAVFQKQMD 97
               K   +DLW   F++ +D
Sbjct: 107 STEHKQQQEDLWEVPFEEILD 127


>gi|111548654 hypothetical protein LOC51057 isoform 1 [Homo sapiens]
          Length = 587

 Score = 26.9 bits (58), Expect = 8.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 64  ERLPRETLAFREELDVLKFLCKDLWVA 90
           +RLPRETL F +  D    L +  W+A
Sbjct: 260 DRLPRETLQFSKLFDASSSLVQMQWIA 286


>gi|111548652 hypothetical protein LOC51057 isoform 2 [Homo sapiens]
          Length = 746

 Score = 26.9 bits (58), Expect = 8.8
 Identities = 12/27 (44%), Positives = 16/27 (59%)

Query: 64  ERLPRETLAFREELDVLKFLCKDLWVA 90
           +RLPRETL F +  D    L +  W+A
Sbjct: 419 DRLPRETLQFSKLFDASSSLVQMQWIA 445


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.138    0.409 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,610,529
Number of Sequences: 37866
Number of extensions: 277751
Number of successful extensions: 734
Number of sequences better than 10.0: 10
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 723
Number of HSP's gapped (non-prelim): 12
length of query: 173
length of database: 18,247,518
effective HSP length: 95
effective length of query: 78
effective length of database: 14,650,248
effective search space: 1142719344
effective search space used: 1142719344
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 58 (26.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.