BLASTP 2.2.11 [Jun-05-2005] Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Query= gi|13129068 nucleolar complex associated 4 homolog [Homo sapiens] (516 letters) Database: hs.faa 37,866 sequences; 18,247,518 total letters Searching..................................................done Score E Sequences producing significant alignments: (bits) Value gi|13129068 nucleolar complex associated 4 homolog [Homo sapiens] 1036 0.0 gi|20806097 nucleolar complex associated 3 homolog [Homo sapiens] 50 4e-06 gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens] 40 0.005 gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo s... 32 1.8 gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo s... 32 1.8 gi|146198864 potassium channel tetramerisation domain containing... 31 2.4 gi|170763479 MMS19 nucleotide excision repair homolog [Homo sapi... 31 3.1 gi|221316632 coatomer protein complex, subunit beta 1 [Homo sapi... 30 4.1 gi|221316630 coatomer protein complex, subunit beta 1 [Homo sapi... 30 4.1 gi|7705369 coatomer protein complex, subunit beta 1 [Homo sapiens] 30 4.1 gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [... 30 6.9 gi|217272877 histone deacetylase 11 isoform 1 [Homo sapiens] 29 9.0 gi|110618250 mucin and cadherin-like isoform 3 [Homo sapiens] 29 9.0 gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] 29 9.0 >gi|13129068 nucleolar complex associated 4 homolog [Homo sapiens] Length = 516 Score = 1036 bits (2679), Expect = 0.0 Identities = 516/516 (100%), Positives = 516/516 (100%) Query: 1 MEREPGAAGVRRALGRRLEAVLASRSEANAVFDILAVLQSEDQEEIQEAVRTCSRLFGAL 60 MEREPGAAGVRRALGRRLEAVLASRSEANAVFDILAVLQSEDQEEIQEAVRTCSRLFGAL Sbjct: 1 MEREPGAAGVRRALGRRLEAVLASRSEANAVFDILAVLQSEDQEEIQEAVRTCSRLFGAL 60 Query: 61 LERGELFVGQLPSEEMVMTGSQGATRKYKVWMRHRYHSCCNRLGELLGHPSFQVKELALS 120 LERGELFVGQLPSEEMVMTGSQGATRKYKVWMRHRYHSCCNRLGELLGHPSFQVKELALS Sbjct: 61 LERGELFVGQLPSEEMVMTGSQGATRKYKVWMRHRYHSCCNRLGELLGHPSFQVKELALS 120 Query: 121 ALLKFVQLEGAHPLEKSKWEGNYLFPRELFKLVVGGLLSPEEDQSLLLSQFREYLDYDDT 180 ALLKFVQLEGAHPLEKSKWEGNYLFPRELFKLVVGGLLSPEEDQSLLLSQFREYLDYDDT Sbjct: 121 ALLKFVQLEGAHPLEKSKWEGNYLFPRELFKLVVGGLLSPEEDQSLLLSQFREYLDYDDT 180 Query: 181 RYHTMQAAVDAVARVTGQHPEVPPAFWNNAFTLLSAVSLPRREPTVSSFYVKRAELWDTW 240 RYHTMQAAVDAVARVTGQHPEVPPAFWNNAFTLLSAVSLPRREPTVSSFYVKRAELWDTW Sbjct: 181 RYHTMQAAVDAVARVTGQHPEVPPAFWNNAFTLLSAVSLPRREPTVSSFYVKRAELWDTW 240 Query: 241 KVAHLKEHRRVFQAMWLSFLKHKLPLSLYKKVLLIVHDAILPQLAQPTLMIDFLTRACDL 300 KVAHLKEHRRVFQAMWLSFLKHKLPLSLYKKVLLIVHDAILPQLAQPTLMIDFLTRACDL Sbjct: 241 KVAHLKEHRRVFQAMWLSFLKHKLPLSLYKKVLLIVHDAILPQLAQPTLMIDFLTRACDL 300 Query: 301 GGALSLLALNGLFILIHKHNLEYPDFYRKLYGLLDPSVFHVKYRARFFHLADLFLSSSHL 360 GGALSLLALNGLFILIHKHNLEYPDFYRKLYGLLDPSVFHVKYRARFFHLADLFLSSSHL Sbjct: 301 GGALSLLALNGLFILIHKHNLEYPDFYRKLYGLLDPSVFHVKYRARFFHLADLFLSSSHL 360 Query: 361 PAYLVAAFAKRLARLALTAPPEALLMVLPFICNLLRRHPACRVLVHRPHGPELDADPYDP 420 PAYLVAAFAKRLARLALTAPPEALLMVLPFICNLLRRHPACRVLVHRPHGPELDADPYDP Sbjct: 361 PAYLVAAFAKRLARLALTAPPEALLMVLPFICNLLRRHPACRVLVHRPHGPELDADPYDP 420 Query: 421 GEEDPAQSRALESSLWELQALQRHYHPEVSKAASVINQALSMPEVSIAPLLELTAYEIFE 480 GEEDPAQSRALESSLWELQALQRHYHPEVSKAASVINQALSMPEVSIAPLLELTAYEIFE Sbjct: 421 GEEDPAQSRALESSLWELQALQRHYHPEVSKAASVINQALSMPEVSIAPLLELTAYEIFE 480 Query: 481 RDLKKKGPEPVPLEFIPAQGLLGRPGELCAQHFTLS 516 RDLKKKGPEPVPLEFIPAQGLLGRPGELCAQHFTLS Sbjct: 481 RDLKKKGPEPVPLEFIPAQGLLGRPGELCAQHFTLS 516 >gi|20806097 nucleolar complex associated 3 homolog [Homo sapiens] Length = 800 Score = 50.4 bits (119), Expect = 4e-06 Identities = 39/116 (33%), Positives = 58/116 (50%), Gaps = 5/116 (4%) Query: 367 AFAKRLARLALTAPPEALLMVLPFICNLLRRHPACRVLVHRPHGPELDADPYDPGEEDPA 426 AF KRL LAL P + + +L L+ P +L+ + + P ++P Sbjct: 625 AFIKRLCTLALHVLPNSSIGILATTRILMHTFPKTDLLLD---SESQGSGVFLPELDEPE 681 Query: 427 QSRALESSLWELQALQRHYHPEVSK-AASVINQALSMPEVSIAP-LLELTAYEIFE 480 A ++LWEL AL+RHYHP V + AA +I A S ++ P L +A E+FE Sbjct: 682 YCNAQNTALWELHALRRHYHPIVQRFAAHLIAGAPSEGSGALKPELSRRSATELFE 737 >gi|42542392 CCAAT/enhancer binding protein zeta [Homo sapiens] Length = 1054 Score = 40.0 bits (92), Expect = 0.005 Identities = 25/73 (34%), Positives = 36/73 (49%), Gaps = 2/73 (2%) Query: 418 YDPGEEDPAQSRALESSLWELQALQRHYHPEVSKAASVINQALSMPEVSIAPLLELTAYE 477 YDP +P A +SLWEL+ L H+HP V+ A I Q + + S PL + T Sbjct: 696 YDPFSRNPLFCGAENTSLWELKKLSVHFHPSVALFAKTILQG-NYIQYSGDPLQDFTLMR 754 Query: 478 IFERDLKKKGPEP 490 +R + P+P Sbjct: 755 FLDR-FVYRNPKP 766 >gi|38016904 thrombospondin repeat containing 1 isoform 1 [Homo sapiens] Length = 1074 Score = 31.6 bits (70), Expect = 1.8 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 408 PHGPELDADPYDPGEEDPAQSRALE-SSLWELQA 440 PHGP L+ DP PG P S SSLW L A Sbjct: 323 PHGPRLEPDPQHPGAWLPLLSNGPHASSLWSLFA 356 >gi|56788359 thrombospondin repeat containing 1 isoform 2 [Homo sapiens] Length = 877 Score = 31.6 bits (70), Expect = 1.8 Identities = 17/34 (50%), Positives = 18/34 (52%), Gaps = 1/34 (2%) Query: 408 PHGPELDADPYDPGEEDPAQSRALE-SSLWELQA 440 PHGP L+ DP PG P S SSLW L A Sbjct: 323 PHGPRLEPDPQHPGAWLPLLSNGPHASSLWSLFA 356 >gi|146198864 potassium channel tetramerisation domain containing 4 [Homo sapiens] Length = 259 Score = 31.2 bits (69), Expect = 2.4 Identities = 20/47 (42%), Positives = 26/47 (55%), Gaps = 1/47 (2%) Query: 102 RLGELLGHPSFQVKELALSALLKFVQLEGAHPLEKSKWEGNYLFPRE 148 R GELL F+ +L L+ +F QL+G KS+WE L PRE Sbjct: 94 RNGELLLPEGFRENQL-LAQEAEFFQLKGLAEEVKSRWEKEQLTPRE 139 >gi|170763479 MMS19 nucleotide excision repair homolog [Homo sapiens] Length = 1030 Score = 30.8 bits (68), Expect = 3.1 Identities = 25/76 (32%), Positives = 35/76 (46%), Gaps = 4/76 (5%) Query: 394 LLRRHPACRVLVHRPHGPELDADPYDPG-EEDPAQSRALESSLWELQALQRHYHPEVSKA 452 LL +HPA + L +L D + G P +S+A LW +AL YHP S Sbjct: 764 LLNKHPAGQQL---DEFLQLAVDKVEAGLGSGPCRSQAFTLLLWVTKALVLRYHPLSSCL 820 Query: 453 ASVINQALSMPEVSIA 468 + + LS PE+ A Sbjct: 821 TARLMGLLSDPELGPA 836 >gi|221316632 coatomer protein complex, subunit beta 1 [Homo sapiens] Length = 953 Score = 30.4 bits (67), Expect = 4.1 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 10/114 (8%) Query: 291 IDFLTRACD----LGGALSLLALNGLFILIHKHNLEYPDFYRKLYGLLDPSVFHVKYRAR 346 +D+L+ D G L L+ + ++ + H + E F R +Y LL S VKY A Sbjct: 206 LDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPSERARFIRCIYNLLQSSSPAVKYEA- 264 Query: 347 FFHLADLFLSSSHLPAYLVAAFAKRLARLALTAPPEALLMVLPFICNLLRRHPA 400 A ++ S P + AA + + + L+VL + L+ HPA Sbjct: 265 ----AGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLIVLDRLIE-LKEHPA 313 >gi|221316630 coatomer protein complex, subunit beta 1 [Homo sapiens] Length = 953 Score = 30.4 bits (67), Expect = 4.1 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 10/114 (8%) Query: 291 IDFLTRACD----LGGALSLLALNGLFILIHKHNLEYPDFYRKLYGLLDPSVFHVKYRAR 346 +D+L+ D G L L+ + ++ + H + E F R +Y LL S VKY A Sbjct: 206 LDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPSERARFIRCIYNLLQSSSPAVKYEA- 264 Query: 347 FFHLADLFLSSSHLPAYLVAAFAKRLARLALTAPPEALLMVLPFICNLLRRHPA 400 A ++ S P + AA + + + L+VL + L+ HPA Sbjct: 265 ----AGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLIVLDRLIE-LKEHPA 313 >gi|7705369 coatomer protein complex, subunit beta 1 [Homo sapiens] Length = 953 Score = 30.4 bits (67), Expect = 4.1 Identities = 30/114 (26%), Positives = 49/114 (42%), Gaps = 10/114 (8%) Query: 291 IDFLTRACD----LGGALSLLALNGLFILIHKHNLEYPDFYRKLYGLLDPSVFHVKYRAR 346 +D+L+ D G L L+ + ++ + H + E F R +Y LL S VKY A Sbjct: 206 LDYLSTCIDQVQTFGDILQLVIVELIYKVCHANPSERARFIRCIYNLLQSSSPAVKYEA- 264 Query: 347 FFHLADLFLSSSHLPAYLVAAFAKRLARLALTAPPEALLMVLPFICNLLRRHPA 400 A ++ S P + AA + + + L+VL + L+ HPA Sbjct: 265 ----AGTLVTLSSAPTAIKAAAQCYIDLIIKESDNNVKLIVLDRLIE-LKEHPA 313 >gi|115430237 spectrin, beta, non-erythrocytic 4 isoform sigma1 [Homo sapiens] Length = 2564 Score = 29.6 bits (65), Expect = 6.9 Identities = 31/107 (28%), Positives = 46/107 (42%), Gaps = 13/107 (12%) Query: 405 VHRPHGPELDADPYDPGEEDPAQSRALESSLWELQALQRHYHPEVSKAASVINQALSMPE 464 VH+ + AD + +E QSR L SS+ E++ L R H KAA+ + S Sbjct: 2050 VHQFAQEAVVADAWLTAQEPLLQSRELGSSVDEVEQLIRR-HEAFRKAAAAWEERFS--- 2105 Query: 465 VSIAPLLELTAYEIFERDLKKKGPEPVPLEFIPAQGLLGRPGELCAQ 511 L LT E + + K+ P P + + G P EL A+ Sbjct: 2106 ----SLRRLTTIEKIKAEQSKQPPTP-----LLGRKFFGDPTELAAK 2143 >gi|217272877 histone deacetylase 11 isoform 1 [Homo sapiens] Length = 347 Score = 29.3 bits (64), Expect = 9.0 Identities = 30/122 (24%), Positives = 48/122 (39%), Gaps = 14/122 (11%) Query: 123 LKFVQLEGAHPLEKSKWEGNYLFPRELFKLVVGGLLSPEE--DQSLLLSQFREYLDYDDT 180 + F+ LE HP + KW F +E L L+ E ++ LL+ R YL+ Sbjct: 26 ITFMGLEKLHPFDAGKWGKVINFLKEEKLLSDSMLVEAREASEEDLLVVHTRRYLNELKW 85 Query: 181 RYHTMQAAVDAVARVTGQHPEVPPAFWNNAFTLLSAVSLPRREPTVSSFYVKRAELWDTW 240 + AVA +T E+PP + F + V P R T + + + W Sbjct: 86 SF--------AVATIT----EIPPVIFLPNFLVQRKVLRPLRTQTGGTIMAGKLAVERGW 133 Query: 241 KV 242 + Sbjct: 134 AI 135 >gi|110618250 mucin and cadherin-like isoform 3 [Homo sapiens] Length = 651 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/18 (72%), Positives = 15/18 (83%) Query: 302 GALSLLALNGLFILIHKH 319 GAL LLAL GL +L+HKH Sbjct: 482 GALLLLALLGLAVLVHKH 499 >gi|110618248 mucin and cadherin-like isoform 1 [Homo sapiens] Length = 845 Score = 29.3 bits (64), Expect = 9.0 Identities = 13/18 (72%), Positives = 15/18 (83%) Query: 302 GALSLLALNGLFILIHKH 319 GAL LLAL GL +L+HKH Sbjct: 676 GALLLLALLGLAVLVHKH 693 Database: hs.faa Posted date: Aug 4, 2009 4:42 PM Number of letters in database: 18,247,518 Number of sequences in database: 37,866 Lambda K H 0.323 0.138 0.418 Gapped Lambda K H 0.267 0.0410 0.140 Matrix: BLOSUM62 Gap Penalties: Existence: 11, Extension: 1 Number of Hits to DB: 20,383,540 Number of Sequences: 37866 Number of extensions: 898585 Number of successful extensions: 2097 Number of sequences better than 10.0: 14 Number of HSP's better than 10.0 without gapping: 5 Number of HSP's successfully gapped in prelim test: 9 Number of HSP's that attempted gapping in prelim test: 2090 Number of HSP's gapped (non-prelim): 15 length of query: 516 length of database: 18,247,518 effective HSP length: 107 effective length of query: 409 effective length of database: 14,195,856 effective search space: 5806105104 effective search space used: 5806105104 T: 11 A: 40 X1: 16 ( 7.5 bits) X2: 38 (14.6 bits) X3: 64 (24.7 bits) S1: 41 (22.0 bits) S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.