Guide to the Human Genome
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Name: GLDC Sequence: fasta or formatted (1020aa) NCBI GI: 108773801
Description:

glycine dehydrogenase (decarboxylating)

Referenced in:

Amino Acid Catabolism
Amino Acid Biosynthesis and Selected Derivatives

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             8.2         84           3
 C cysteine            2.7         28           2
 D aspartate           5.1         52           2
 E glutamate           6.2         63           2
 F phenylalanine       3.4         35           2
 G glycine             8.4         86           4
 H histidine           3.5         36           1
 I isoleucine          5.5         56           1
 K lysine              4.6         47           2
 L leucine             9.3         95           2
 M methionine          2.9         30           2
 N asparagine          3.5         36           1
 P proline             5.4         55           2
 Q glutamine           4.0         41           2
 R arginine            6.1         62           2
 S serine              6.7         68           3
 T threonine           4.8         49           1
 V valine              5.6         57           2
 W tryptophan          1.1         11           1
 Y tyrosine            2.8         29           2
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   glycine dehydrogenase (decarboxylating) 
PIWIL4                0.005   piwi-like 4 
FBXO38                0.004   F-box protein 38 isoform b 
SGPL1                 0.003   sphingosine-1-phosphate lyase 1 
SHANK1                0.003   SH3 and multiple ankyrin repeat domains 1 
FCER2                 0.003   Fc fragment of IgE, low affinity II, receptor for (C...
WDR33                 0.003   WD repeat domain 33 isoform 1 
ITGAM                 0.002   integrin alpha M isoform 1 precursor 
ITGAM                 0.002   integrin alpha M isoform 2 precursor 
MAF                   0.002   v-maf musculoaponeurotic fibrosarcoma oncogene homol...
MAF                   0.002   v-maf musculoaponeurotic fibrosarcoma oncogene homolo...
ZNRF2                 0.002   zinc finger/RING finger 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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