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Search of human proteins with 108773789
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|108773789 replication factor C 3 isoform 2 [Homo sapiens]
(305 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|108773789 replication factor C 3 isoform 2 [Homo sapiens] 617 e-177
gi|4506489 replication factor C 3 isoform 1 [Homo sapiens] 593 e-170
gi|31881687 replication factor C 4 [Homo sapiens] 113 2e-25
gi|4506491 replication factor C 4 [Homo sapiens] 113 2e-25
gi|6677723 replication factor C 5 isoform 1 [Homo sapiens] 104 1e-22
gi|31563534 replication factor C 2 isoform 1 [Homo sapiens] 103 2e-22
gi|194306571 replication factor C 5 isoform 2 [Homo sapiens] 100 2e-21
gi|194306567 replication factor C 5 isoform 2 [Homo sapiens] 100 2e-21
gi|194306569 replication factor C 5 isoform 3 [Homo sapiens] 71 1e-12
gi|28882049 replication factor C 2 isoform 2 [Homo sapiens] 58 9e-09
gi|19718796 RAD17 homolog isoform 1 [Homo sapiens] 39 0.007
gi|19718794 RAD17 homolog isoform 1 [Homo sapiens] 39 0.007
gi|19718792 RAD17 homolog isoform 1 [Homo sapiens] 39 0.007
gi|19718784 RAD17 homolog isoform 1 [Homo sapiens] 39 0.007
gi|4506383 RAD17 homolog isoform 1 [Homo sapiens] 39 0.007
gi|19718786 RAD17 homolog isoform 2 [Homo sapiens] 39 0.007
gi|18426904 Werner helicase interacting protein isoform 2 [Homo ... 31 1.6
gi|18426902 Werner helicase interacting protein isoform 1 [Homo ... 31 1.6
gi|9955963 ATP-binding cassette, sub-family B, member 6 [Homo sa... 30 2.0
gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens] 29 4.5
gi|4505187 small inducible cytokine B9 precursor [Homo sapiens] 29 5.9
gi|116284382 G protein-coupled bile acid receptor 1 [Homo sapiens] 29 5.9
gi|116284384 G protein-coupled bile acid receptor 1 [Homo sapiens] 29 5.9
gi|24850109 G protein-coupled bile acid receptor 1 [Homo sapiens] 29 5.9
gi|119943098 dihydropyrimidine dehydrogenase isoform 1 [Homo sap... 28 7.7
gi|119943125 G protein-coupled receptor 64 isoform 3 [Homo sapiens] 28 7.7
gi|119943116 G protein-coupled receptor 64 isoform 2 [Homo sapiens] 28 7.7
gi|119943120 G protein-coupled receptor 64 isoform 1 [Homo sapiens] 28 7.7
gi|119943129 G protein-coupled receptor 64 isoform 4 [Homo sapiens] 28 7.7
>gi|108773789 replication factor C 3 isoform 2 [Homo sapiens]
Length = 305
Score = 617 bits (1591), Expect = e-177
Identities = 305/305 (100%), Positives = 305/305 (100%)
Query: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKACKEESR 300
TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKACKEESR
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKACKEESR 300
Query: 301 SCDIF 305
SCDIF
Sbjct: 301 SCDIF 305
>gi|4506489 replication factor C 3 isoform 1 [Homo sapiens]
Length = 356
Score = 593 bits (1529), Expect = e-170
Identities = 296/304 (97%), Positives = 297/304 (97%), Gaps = 1/304 (0%)
Query: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY
Sbjct: 1 MSLWVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELY 60
Query: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ
Sbjct: 61 GVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQ 120
Query: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL
Sbjct: 121 LETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCL 180
Query: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF
Sbjct: 181 AVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPF 240
Query: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKACKEE-S 299
TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMK E
Sbjct: 241 TADQEIPETDWEVYLRETANAIVSQQTPQRLLEVRGRLYELLTHCIPPEIIMKGLLSELL 300
Query: 300 RSCD 303
+CD
Sbjct: 301 HNCD 304
>gi|31881687 replication factor C 4 [Homo sapiens]
Length = 363
Score = 113 bits (282), Expect = 2e-25
Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 29/233 (12%)
Query: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
WV+KYRP + + + +E A L+ ++ D P+LL YGP G GK + I+ REL+G
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123
+ +LR+ LE+N SD V++E +K AQ +
Sbjct: 100 LFRLRV-----------------------LELNASDERGIQ--VVREKVKNFAQLTVSGS 134
Query: 124 NSQRD----FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
S FK+V+L E D +T AQ ALRRTMEK T R L CN S++I P+ SRC
Sbjct: 135 RSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRC 194
Query: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEA 232
R S + L + KKE + + + L + S +LRKA+ ++
Sbjct: 195 SKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQS 247
>gi|4506491 replication factor C 4 [Homo sapiens]
Length = 363
Score = 113 bits (282), Expect = 2e-25
Identities = 77/233 (33%), Positives = 113/233 (48%), Gaps = 29/233 (12%)
Query: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
WV+KYRP + + + +E A L+ ++ D P+LL YGP G GK + I+ REL+G
Sbjct: 40 WVEKYRPKCVDEVAFQEEVVAVLKKSLEGADLPNLLFYGPPGTGKTSTILAAARELFGPE 99
Query: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123
+ +LR+ LE+N SD V++E +K AQ +
Sbjct: 100 LFRLRV-----------------------LELNASDERGIQ--VVREKVKNFAQLTVSGS 134
Query: 124 NSQRD----FKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRC 179
S FK+V+L E D +T AQ ALRRTMEK T R L CN S++I P+ SRC
Sbjct: 135 RSDGKPCPPFKIVILDEADSMTSAAQAALRRTMEKESKTTRFCLICNYVSRIIEPLTSRC 194
Query: 180 LAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEA 232
R S + L + KKE + + + L + S +LRKA+ ++
Sbjct: 195 SKFRFKPLSDKIQQQRLLDIAKKENVKISDEGIAYLVKVSEGDLRKAITFLQS 247
>gi|6677723 replication factor C 5 isoform 1 [Homo sapiens]
Length = 340
Score = 104 bits (259), Expect = 1e-22
Identities = 70/224 (31%), Positives = 114/224 (50%), Gaps = 28/224 (12%)
Query: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
WV+KYRP +L L H++ + ++ + PHLL+YGP G GK + I+ ++LY
Sbjct: 22 WVEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLY--- 78
Query: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123
K E ++ LE+N SD D +I+ + + A ++ T
Sbjct: 79 ----------------KDKEFGSMV----LELNASDDRGID--IIRGPILSFASTR---T 113
Query: 124 NSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183
++ FK+V+L E D +T+DAQ+ALRR +EK+ R L CN SK+IP ++SRC R
Sbjct: 114 IFKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFR 173
Query: 184 VPAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL 227
+ E + L V ++E +++ L S ++R+AL
Sbjct: 174 FGPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 217
>gi|31563534 replication factor C 2 isoform 1 [Homo sapiens]
Length = 354
Score = 103 bits (256), Expect = 2e-22
Identities = 65/200 (32%), Positives = 99/200 (49%), Gaps = 28/200 (14%)
Query: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
WV+KYRP L + +++ ++L + G+ P++++ GP G GK T I+C+ R L G
Sbjct: 38 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 97
Query: 64 VEKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLET 123
++ LE+N S+ D V++ +K AQ Q T
Sbjct: 98 LKDAM------------------------LELNASNDRGID--VVRNKIKMFAQ--QKVT 129
Query: 124 NSQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVR 183
+ K+++L E D +T AQ ALRRTME Y T R L CN++ K+I PI+SRC +R
Sbjct: 130 LPKGRHKIIILDEADSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLR 189
Query: 184 VPAPSIEDICHVLSTVCKKE 203
+ I L V +KE
Sbjct: 190 YTKLTDAQILTRLMNVIEKE 209
>gi|194306571 replication factor C 5 isoform 2 [Homo sapiens]
Length = 319
Score = 100 bits (248), Expect = 2e-21
Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 28/223 (12%)
Query: 5 VDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGV 64
V+KYRP +L L H++ + ++ + PHLL+YGP G GK + I+ ++LY
Sbjct: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLY---- 57
Query: 65 EKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETN 124
K E ++ LE+N SD D +I+ + + A ++ T
Sbjct: 58 ---------------KDKEFGSMV----LELNASDDRGID--IIRGPILSFASTR---TI 93
Query: 125 SQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRV 184
++ FK+V+L E D +T+DAQ+ALRR +EK+ R L CN SK+IP ++SRC R
Sbjct: 94 FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRF 153
Query: 185 PAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL 227
+ E + L V ++E +++ L S ++R+AL
Sbjct: 154 GPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 196
>gi|194306567 replication factor C 5 isoform 2 [Homo sapiens]
Length = 319
Score = 100 bits (248), Expect = 2e-21
Identities = 69/223 (30%), Positives = 113/223 (50%), Gaps = 28/223 (12%)
Query: 5 VDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGV 64
V+KYRP +L L H++ + ++ + PHLL+YGP G GK + I+ ++LY
Sbjct: 2 VEKYRPQTLNDLISHQDILSTIQKFINEDRLPHLLLYGPPGTGKTSTILACAKQLY---- 57
Query: 65 EKLRIEHQTITTPSKKKIEISTIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETN 124
K E ++ LE+N SD D +I+ + + A ++ T
Sbjct: 58 ---------------KDKEFGSMV----LELNASDDRGID--IIRGPILSFASTR---TI 93
Query: 125 SQRDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRV 184
++ FK+V+L E D +T+DAQ+ALRR +EK+ R L CN SK+IP ++SRC R
Sbjct: 94 FKKGFKLVILDEADAMTQDAQNALRRVIEKFTENTRFCLICNYLSKIIPALQSRCTRFRF 153
Query: 185 PAPSIEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKAL 227
+ E + L V ++E +++ L S ++R+AL
Sbjct: 154 GPLTPELMVPRLEHVVEEEKVDISEDGMKALVTLSSGDMRRAL 196
>gi|194306569 replication factor C 5 isoform 3 [Homo sapiens]
Length = 255
Score = 70.9 bits (172), Expect = 1e-12
Identities = 46/135 (34%), Positives = 75/135 (55%), Gaps = 5/135 (3%)
Query: 93 LEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTM 152
LE+N SD D +I+ + + A ++ T ++ FK+V+L E D +T+DAQ+ALRR +
Sbjct: 3 LELNASDDRGID--IIRGPILSFASTR---TIFKKGFKLVILDEADAMTQDAQNALRRVI 57
Query: 153 EKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVCKKEGLNLPSQLA 212
EK+ R L CN SK+IP ++SRC R + E + L V ++E +++
Sbjct: 58 EKFTENTRFCLICNYLSKIIPALQSRCTRFRFGPLTPELMVPRLEHVVEEEKVDISEDGM 117
Query: 213 HRLAEKSCRNLRKAL 227
L S ++R+AL
Sbjct: 118 KALVTLSSGDMRRAL 132
>gi|28882049 replication factor C 2 isoform 2 [Homo sapiens]
Length = 320
Score = 58.2 bits (139), Expect = 9e-09
Identities = 32/77 (41%), Positives = 42/77 (54%)
Query: 127 RDFKVVLLTEVDKLTKDAQHALRRTMEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPA 186
+D + L D +T AQ ALRRTME Y T R L CN++ K+I PI+SRC +R
Sbjct: 99 KDAMLELNASNDSMTDGAQQALRRTMEIYSKTTRFALACNASDKIIEPIQSRCAVLRYTK 158
Query: 187 PSIEDICHVLSTVCKKE 203
+ I L V +KE
Sbjct: 159 LTDAQILTRLMNVIEKE 175
Score = 55.1 bits (131), Expect = 8e-08
Identities = 29/104 (27%), Positives = 57/104 (54%), Gaps = 8/104 (7%)
Query: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVG 63
WV+KYRP L + +++ ++L + G+ P++++ GP G GK T I+C+ R L G
Sbjct: 38 WVEKYRPVKLNEIVGNEDTVSRLEVFAREGNVPNIIIAGPPGTGKTTSILCLARALLGPA 97
Query: 64 VE----KLRIEHQTITTPS----KKKIEISTIASNYHLEVNPSD 99
++ +L + ++T + ++ +EI + + + L N SD
Sbjct: 98 LKDAMLELNASNDSMTDGAQQALRRTMEIYSKTTRFALACNASD 141
>gi|19718796 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 38.5 bits (88), Expect = 0.007
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 26/175 (14%)
Query: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPH--------LLVYGPSGAGKKTRIMCI 55
WVDKY+P + L HK++ ++ ++ LL+ GP G GK T + +
Sbjct: 80 WVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKIL 139
Query: 56 LRELYGVGVEKLRIEHQTITTPSKKKIEIS---TIASNYHLEVNPSDAGNSDRVVIQEML 112
+E +G+ V+ E P +K + S++H+ S V +E L
Sbjct: 140 SKE-HGIQVQ----EWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQI-----AVFKEFL 189
Query: 113 KTVA---QSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKY--MSTCRLI 162
+ Q L + + D K++L+ ++ H L + KY + C LI
Sbjct: 190 LRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLI 244
>gi|19718794 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 38.5 bits (88), Expect = 0.007
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 26/175 (14%)
Query: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPH--------LLVYGPSGAGKKTRIMCI 55
WVDKY+P + L HK++ ++ ++ LL+ GP G GK T + +
Sbjct: 80 WVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKIL 139
Query: 56 LRELYGVGVEKLRIEHQTITTPSKKKIEIS---TIASNYHLEVNPSDAGNSDRVVIQEML 112
+E +G+ V+ E P +K + S++H+ S V +E L
Sbjct: 140 SKE-HGIQVQ----EWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQI-----AVFKEFL 189
Query: 113 KTVA---QSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKY--MSTCRLI 162
+ Q L + + D K++L+ ++ H L + KY + C LI
Sbjct: 190 LRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLI 244
>gi|19718792 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 38.5 bits (88), Expect = 0.007
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 26/175 (14%)
Query: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPH--------LLVYGPSGAGKKTRIMCI 55
WVDKY+P + L HK++ ++ ++ LL+ GP G GK T + +
Sbjct: 80 WVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKIL 139
Query: 56 LRELYGVGVEKLRIEHQTITTPSKKKIEIS---TIASNYHLEVNPSDAGNSDRVVIQEML 112
+E +G+ V+ E P +K + S++H+ S V +E L
Sbjct: 140 SKE-HGIQVQ----EWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQI-----AVFKEFL 189
Query: 113 KTVA---QSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKY--MSTCRLI 162
+ Q L + + D K++L+ ++ H L + KY + C LI
Sbjct: 190 LRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLI 244
>gi|19718784 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 38.5 bits (88), Expect = 0.007
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 26/175 (14%)
Query: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPH--------LLVYGPSGAGKKTRIMCI 55
WVDKY+P + L HK++ ++ ++ LL+ GP G GK T + +
Sbjct: 80 WVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKIL 139
Query: 56 LRELYGVGVEKLRIEHQTITTPSKKKIEIS---TIASNYHLEVNPSDAGNSDRVVIQEML 112
+E +G+ V+ E P +K + S++H+ S V +E L
Sbjct: 140 SKE-HGIQVQ----EWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQI-----AVFKEFL 189
Query: 113 KTVA---QSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKY--MSTCRLI 162
+ Q L + + D K++L+ ++ H L + KY + C LI
Sbjct: 190 LRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLI 244
>gi|4506383 RAD17 homolog isoform 1 [Homo sapiens]
Length = 670
Score = 38.5 bits (88), Expect = 0.007
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 26/175 (14%)
Query: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPH--------LLVYGPSGAGKKTRIMCI 55
WVDKY+P + L HK++ ++ ++ LL+ GP G GK T + +
Sbjct: 80 WVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKIL 139
Query: 56 LRELYGVGVEKLRIEHQTITTPSKKKIEIS---TIASNYHLEVNPSDAGNSDRVVIQEML 112
+E +G+ V+ E P +K + S++H+ S V +E L
Sbjct: 140 SKE-HGIQVQ----EWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQI-----AVFKEFL 189
Query: 113 KTVA---QSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKY--MSTCRLI 162
+ Q L + + D K++L+ ++ H L + KY + C LI
Sbjct: 190 LRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLI 244
>gi|19718786 RAD17 homolog isoform 2 [Homo sapiens]
Length = 681
Score = 38.5 bits (88), Expect = 0.007
Identities = 41/175 (23%), Positives = 72/175 (41%), Gaps = 26/175 (14%)
Query: 4 WVDKYRPCSLGRLDYHKEQAAQLRNLVQCGDFPH--------LLVYGPSGAGKKTRIMCI 55
WVDKY+P + L HK++ ++ ++ LL+ GP G GK T + +
Sbjct: 91 WVDKYKPETQHELAVHKKKIEEVETWLKAQVLERQPKQGGSILLITGPPGCGKTTTLKIL 150
Query: 56 LRELYGVGVEKLRIEHQTITTPSKKKIEIS---TIASNYHLEVNPSDAGNSDRVVIQEML 112
+E +G+ V+ E P +K + S++H+ S V +E L
Sbjct: 151 SKE-HGIQVQ----EWINPVLPDFQKDDFKGMFNTESSFHMFPYQSQI-----AVFKEFL 200
Query: 113 KTVA---QSQQLETNSQRDFKVVLLTEVDKLTKDAQHALRRTMEKY--MSTCRLI 162
+ Q L + + D K++L+ ++ H L + KY + C LI
Sbjct: 201 LRATKYNKLQMLGDDLRTDKKIILVEDLPNQFYRDSHTLHEVLRKYVRIGRCPLI 255
>gi|18426904 Werner helicase interacting protein isoform 2 [Homo
sapiens]
Length = 640
Score = 30.8 bits (68), Expect = 1.6
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 22 QAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVEKLRIEHQTITTPSKKK 81
Q LR+L++ + P L+++GP G GK T L + +K I T++ + K
Sbjct: 248 QDTLLRSLLETNEIPSLILWGPPGCGKTT-----LAHIIASNSKKHSIRFVTLSATNAKT 302
Query: 82 IEISTI 87
++ +
Sbjct: 303 NDVRDV 308
>gi|18426902 Werner helicase interacting protein isoform 1 [Homo
sapiens]
Length = 665
Score = 30.8 bits (68), Expect = 1.6
Identities = 17/66 (25%), Positives = 32/66 (48%), Gaps = 5/66 (7%)
Query: 22 QAAQLRNLVQCGDFPHLLVYGPSGAGKKTRIMCILRELYGVGVEKLRIEHQTITTPSKKK 81
Q LR+L++ + P L+++GP G GK T L + +K I T++ + K
Sbjct: 248 QDTLLRSLLETNEIPSLILWGPPGCGKTT-----LAHIIASNSKKHSIRFVTLSATNAKT 302
Query: 82 IEISTI 87
++ +
Sbjct: 303 NDVRDV 308
>gi|9955963 ATP-binding cassette, sub-family B, member 6 [Homo
sapiens]
Length = 842
Score = 30.4 bits (67), Expect = 2.0
Identities = 20/62 (32%), Positives = 32/62 (51%), Gaps = 8/62 (12%)
Query: 38 LLVYGPSGAGKKTRIMCILRELYGVGVEKLRIEHQTITTPSKKKIEISTIASNYHLEVNP 97
L + GPSGAGK T I+ +L Y + +RI+ Q I+ +++ + H+ V P
Sbjct: 619 LALVGPSGAGKST-ILRLLFRFYDISSGCIRIDGQDIS-------QVTQASLRSHIGVVP 670
Query: 98 SD 99
D
Sbjct: 671 QD 672
>gi|19115954 dynein, axonemal, heavy chain 5 [Homo sapiens]
Length = 4624
Score = 29.3 bits (64), Expect = 4.5
Identities = 15/42 (35%), Positives = 24/42 (57%), Gaps = 2/42 (4%)
Query: 38 LLVYGPSGAGKKTRIMCILRELYGVGV--EKLRIEHQTITTP 77
++ GPSGAGK T I ++R + G ++R+ + IT P
Sbjct: 2258 MMTLGPSGAGKTTCIHTLMRAMTDCGKPHREMRMNPKAITAP 2299
>gi|4505187 small inducible cytokine B9 precursor [Homo sapiens]
Length = 125
Score = 28.9 bits (63), Expect = 5.9
Identities = 23/87 (26%), Positives = 43/87 (49%), Gaps = 3/87 (3%)
Query: 48 KKTRIMCILRELYGVGVEKLRIEHQTITTPSKKKIE-ISTIASNYHLEVNPSDAGNSDRV 106
+K R CI + ++ L+ Q +PS +KIE I+T+ + +NP A +
Sbjct: 27 RKGRCSCISTNQGTIHLQSLKDLKQFAPSPSCEKIEIIATLKNGVQTCLNPDSADVKE-- 84
Query: 107 VIQEMLKTVAQSQQLETNSQRDFKVVL 133
+I++ K V+Q ++ + + K VL
Sbjct: 85 LIKKWEKQVSQKKKQKNGKKHQKKKVL 111
>gi|116284382 G protein-coupled bile acid receptor 1 [Homo sapiens]
Length = 330
Score = 28.9 bits (63), Expect = 5.9
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 180 LAVRVPAPS---IEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEAC 233
L+VRV A + ++DIC + VC+ E PS LA L + R A+L+ C
Sbjct: 184 LSVRVLATAHRQLQDICRLERAVCRDE----PSALARALTWRQARAQAGAMLLFGLC 236
>gi|116284384 G protein-coupled bile acid receptor 1 [Homo sapiens]
Length = 330
Score = 28.9 bits (63), Expect = 5.9
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 180 LAVRVPAPS---IEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEAC 233
L+VRV A + ++DIC + VC+ E PS LA L + R A+L+ C
Sbjct: 184 LSVRVLATAHRQLQDICRLERAVCRDE----PSALARALTWRQARAQAGAMLLFGLC 236
>gi|24850109 G protein-coupled bile acid receptor 1 [Homo sapiens]
Length = 330
Score = 28.9 bits (63), Expect = 5.9
Identities = 20/57 (35%), Positives = 29/57 (50%), Gaps = 7/57 (12%)
Query: 180 LAVRVPAPS---IEDICHVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEAC 233
L+VRV A + ++DIC + VC+ E PS LA L + R A+L+ C
Sbjct: 184 LSVRVLATAHRQLQDICRLERAVCRDE----PSALARALTWRQARAQAGAMLLFGLC 236
>gi|119943098 dihydropyrimidine dehydrogenase isoform 1 [Homo
sapiens]
Length = 1025
Score = 28.5 bits (62), Expect = 7.7
Identities = 17/75 (22%), Positives = 31/75 (41%), Gaps = 1/75 (1%)
Query: 174 PIRSRCLAVRVPAPSIEDIC-HVLSTVCKKEGLNLPSQLAHRLAEKSCRNLRKALLMCEA 232
P++ C + P P+I+D+ L + L+ Q+ + E+ C N K + C
Sbjct: 906 PLKRNCFIPKRPIPTIKDVIGKALQYLGTFGELSNVEQVVAMIDEEMCINCGKCYMTCND 965
Query: 233 CRVQQYPFTADQEIP 247
Q F + +P
Sbjct: 966 SGYQAIQFDPETHLP 980
>gi|119943125 G protein-coupled receptor 64 isoform 3 [Homo sapiens]
Length = 995
Score = 28.5 bits (62), Expect = 7.7
Identities = 48/210 (22%), Positives = 75/210 (35%), Gaps = 51/210 (24%)
Query: 85 STIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDA 144
ST+ N H+ G V+ LK ++ L+T S+ F + T +A
Sbjct: 112 STVPQNQHIT-----NGTLTGVLSLSELKRSELNKTLQTLSETYFIMCA-------TAEA 159
Query: 145 QHALRRT----MEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVC 200
Q L T + M+ C +I I P+ C +VR+P PS
Sbjct: 160 QSTLNCTFTIKLNNTMNACAVIAALERVK--IRPMEHCCCSVRIPCPS------------ 205
Query: 201 KKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETAN 260
P +L EK +L+ ++C A + PF++ Q IP L +
Sbjct: 206 ------SPEEL-----EKLQCDLQDP-IVCLADHPRGPPFSSSQSIPVVPRATVLSQVPK 253
Query: 261 AIVSQQTPQRLLEVRGRLYELLTHCIPPEI 290
A + P Y +TH +P I
Sbjct: 254 ATSFAEPPD---------YSPVTHNVPSPI 274
>gi|119943116 G protein-coupled receptor 64 isoform 2 [Homo sapiens]
Length = 1003
Score = 28.5 bits (62), Expect = 7.7
Identities = 48/210 (22%), Positives = 75/210 (35%), Gaps = 51/210 (24%)
Query: 85 STIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDA 144
ST+ N H+ G V+ LK ++ L+T S+ F + T +A
Sbjct: 120 STVPQNQHIT-----NGTLTGVLSLSELKRSELNKTLQTLSETYFIMCA-------TAEA 167
Query: 145 QHALRRT----MEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVC 200
Q L T + M+ C +I I P+ C +VR+P PS
Sbjct: 168 QSTLNCTFTIKLNNTMNACAVIAALERVK--IRPMEHCCCSVRIPCPS------------ 213
Query: 201 KKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETAN 260
P +L EK +L+ ++C A + PF++ Q IP L +
Sbjct: 214 ------SPEEL-----EKLQCDLQDP-IVCLADHPRGPPFSSSQSIPVVPRATVLSQVPK 261
Query: 261 AIVSQQTPQRLLEVRGRLYELLTHCIPPEI 290
A + P Y +TH +P I
Sbjct: 262 ATSFAEPPD---------YSPVTHNVPSPI 282
>gi|119943120 G protein-coupled receptor 64 isoform 1 [Homo sapiens]
Length = 1017
Score = 28.5 bits (62), Expect = 7.7
Identities = 48/210 (22%), Positives = 75/210 (35%), Gaps = 51/210 (24%)
Query: 85 STIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDA 144
ST+ N H+ G V+ LK ++ L+T S+ F + T +A
Sbjct: 134 STVPQNQHIT-----NGTLTGVLSLSELKRSELNKTLQTLSETYFIMCA-------TAEA 181
Query: 145 QHALRRT----MEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVC 200
Q L T + M+ C +I I P+ C +VR+P PS
Sbjct: 182 QSTLNCTFTIKLNNTMNACAVIAALERVK--IRPMEHCCCSVRIPCPS------------ 227
Query: 201 KKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETAN 260
P +L EK +L+ ++C A + PF++ Q IP L +
Sbjct: 228 ------SPEEL-----EKLQCDLQDP-IVCLADHPRGPPFSSSQSIPVVPRATVLSQVPK 275
Query: 261 AIVSQQTPQRLLEVRGRLYELLTHCIPPEI 290
A + P Y +TH +P I
Sbjct: 276 ATSFAEPPD---------YSPVTHNVPSPI 296
>gi|119943129 G protein-coupled receptor 64 isoform 4 [Homo sapiens]
Length = 1014
Score = 28.5 bits (62), Expect = 7.7
Identities = 48/210 (22%), Positives = 75/210 (35%), Gaps = 51/210 (24%)
Query: 85 STIASNYHLEVNPSDAGNSDRVVIQEMLKTVAQSQQLETNSQRDFKVVLLTEVDKLTKDA 144
ST+ N H+ G V+ LK ++ L+T S+ F + T +A
Sbjct: 131 STVPQNQHIT-----NGTLTGVLSLSELKRSELNKTLQTLSETYFIMCA-------TAEA 178
Query: 145 QHALRRT----MEKYMSTCRLILCCNSTSKVIPPIRSRCLAVRVPAPSIEDICHVLSTVC 200
Q L T + M+ C +I I P+ C +VR+P PS
Sbjct: 179 QSTLNCTFTIKLNNTMNACAVIAALERVK--IRPMEHCCCSVRIPCPS------------ 224
Query: 201 KKEGLNLPSQLAHRLAEKSCRNLRKALLMCEACRVQQYPFTADQEIPETDWEVYLRETAN 260
P +L EK +L+ ++C A + PF++ Q IP L +
Sbjct: 225 ------SPEEL-----EKLQCDLQDP-IVCLADHPRGPPFSSSQSIPVVPRATVLSQVPK 272
Query: 261 AIVSQQTPQRLLEVRGRLYELLTHCIPPEI 290
A + P Y +TH +P I
Sbjct: 273 ATSFAEPPD---------YSPVTHNVPSPI 293
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.134 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,871,189
Number of Sequences: 37866
Number of extensions: 506763
Number of successful extensions: 1332
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 17
Number of HSP's that attempted gapping in prelim test: 1301
Number of HSP's gapped (non-prelim): 30
length of query: 305
length of database: 18,247,518
effective HSP length: 102
effective length of query: 203
effective length of database: 14,385,186
effective search space: 2920192758
effective search space used: 2920192758
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 62 (28.5 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.