Search of human proteins with 45387955

Search of human proteins with 45387955

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|45387955 hypothetical protein LOC125988 [Homo sapiens]
         (118 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|45387955 hypothetical protein LOC125988 [Homo sapiens]             239   3e-64
gi|21687188 hypothetical protein LOC146325 [Homo sapiens]              30   0.53 
gi|115527078 spindlin family, member 3 [Homo sapiens]                  29   0.91 
gi|112293285 spindlin [Homo sapiens]                                   28   1.2  
gi|150378498 fragile site-associated protein [Homo sapiens]            28   2.0  
gi|148727368 bromodomain and PHD finger containing, 3 [Homo sapi...    26   7.7  
gi|7662072 zinc finger and BTB domain containing 39 [Homo sapiens]     26   7.7  

>gi|45387955 hypothetical protein LOC125988 [Homo sapiens]
          Length = 118

 Score =  239 bits (611), Expect = 3e-64
 Identities = 118/118 (100%), Positives = 118/118 (100%)

Query: 1   MVARVWSLMRFLIKGSVAGGAVYLVYDQELLGPSDKSQAALQKAGEVVPPAMYQFSQYVC 60
           MVARVWSLMRFLIKGSVAGGAVYLVYDQELLGPSDKSQAALQKAGEVVPPAMYQFSQYVC
Sbjct: 1   MVARVWSLMRFLIKGSVAGGAVYLVYDQELLGPSDKSQAALQKAGEVVPPAMYQFSQYVC 60

Query: 61  QQTGLQIPQLPAPPKIYFPIRDSWNAGIMTVMSALSVAPSKAREYSKEGWEYVKARTK 118
           QQTGLQIPQLPAPPKIYFPIRDSWNAGIMTVMSALSVAPSKAREYSKEGWEYVKARTK
Sbjct: 61  QQTGLQIPQLPAPPKIYFPIRDSWNAGIMTVMSALSVAPSKAREYSKEGWEYVKARTK 118


>gi|21687188 hypothetical protein LOC146325 [Homo sapiens]
          Length = 571

 Score = 29.6 bits (65), Expect = 0.53
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 12/80 (15%)

Query: 31  LGPSDKSQAA---LQKAGEVVPPAMYQFSQYVCQQTGLQIPQLPAP-PKIYFPIRDSWNA 86
           LGPS  + A    L  A  ++PPA             +Q PQ P P P++Y+P+      
Sbjct: 223 LGPSLAAAAHVPFLASASPLLPPAT--------AFPAVQPPQRPTPAPRLYYPLLLEHTL 274

Query: 87  GIMTVMSALSVAPSKAREYS 106
           G+    +AL+ AP   R  S
Sbjct: 275 GLPAGKAALAKAPVSPRSPS 294


>gi|115527078 spindlin family, member 3 [Homo sapiens]
          Length = 258

 Score = 28.9 bits (63), Expect = 0.91
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 27  DQELLGPSDKSQAALQKAGEVVPPAMYQFSQYV----CQQTGLQIPQLPAPPKIYF 78
           D  +L  S+ S  A ++ GEV+   + +  +Y      ++TG+ I Q+ A P +YF
Sbjct: 185 DLRILQDSNDSPLAEREPGEVIDSLVGKQVEYAKDDGSKRTGMVIHQVEAKPSVYF 240


>gi|112293285 spindlin [Homo sapiens]
          Length = 262

 Score = 28.5 bits (62), Expect = 1.2
 Identities = 17/56 (30%), Positives = 30/56 (53%), Gaps = 4/56 (7%)

Query: 27  DQELLGPSDKSQAALQKAGEVVPPAMYQFSQYV----CQQTGLQIPQLPAPPKIYF 78
           D  ++  S+ S  A ++ GEVV   + +  +Y      ++TG+ I Q+ A P +YF
Sbjct: 189 DLRIMPDSNDSPPAEREPGEVVDSLVGKQVEYAKEDGSKRTGMVIHQVEAKPSVYF 244


>gi|150378498 fragile site-associated protein [Homo sapiens]
          Length = 5005

 Score = 27.7 bits (60), Expect = 2.0
 Identities = 25/80 (31%), Positives = 36/80 (45%), Gaps = 3/80 (3%)

Query: 42   QKAGEVVPPAM--YQFSQYVCQQTGLQIPQLPAP-PKIYFPIRDSWNAGIMTVMSALSVA 98
            Q  GE +  A+  +Q  QY+ Q    +I   PA   + Y+    S N G++TV  AL+  
Sbjct: 1028 QSVGEGISAAIQDFQVRQYIEQLNNCRIGLQPAVLRRAYWLEAGSANLGLITVDIALAAD 1087

Query: 99   PSKAREYSKEGWEYVKARTK 118
                 E  +   E   ARTK
Sbjct: 1088 HHSKHEAQRHFLETHDARTK 1107


>gi|148727368 bromodomain and PHD finger containing, 3 [Homo
           sapiens]
          Length = 1205

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 8/18 (44%), Positives = 14/18 (77%)

Query: 48  VPPAMYQFSQYVCQQTGL 65
           +PPA ++ + Y+C+Q GL
Sbjct: 316 IPPARWKLTCYICKQKGL 333


>gi|7662072 zinc finger and BTB domain containing 39 [Homo sapiens]
          Length = 712

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 17/60 (28%), Positives = 25/60 (41%), Gaps = 10/60 (16%)

Query: 15  GSVAGGAVYLVYDQELLGPSDKSQAALQKAGEVVPPAMYQFSQYVCQQTGLQIPQLPAPP 74
           G + GG  YL  D+  + PSD   +  ++   V   A +           L +PQ P PP
Sbjct: 157 GELRGGGDYLGADRNYVLPSDAGGSYKEEEKNVASDANH----------SLHLPQPPPPP 206


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.132    0.399 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,610,196
Number of Sequences: 37866
Number of extensions: 182220
Number of successful extensions: 464
Number of sequences better than 10.0: 7
Number of HSP's better than 10.0 without gapping: 2
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 462
Number of HSP's gapped (non-prelim): 7
length of query: 118
length of database: 18,247,518
effective HSP length: 88
effective length of query: 30
effective length of database: 14,915,310
effective search space: 447459300
effective search space used: 447459300
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.