Guide to the Human Genome
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Name: C19orf70 Sequence: fasta or formatted (118aa) NCBI GI: 45387955
Description:

hypothetical protein LOC125988

Not currently referenced in the text

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            11.0         13           2
 C cysteine            0.8          1           1
 D aspartate           2.5          3           1
 E glutamate           4.2          5           1
 F phenylalanine       2.5          3           1
 G glycine             6.8          8           2
 H histidine           0.0          0           0
 I isoleucine          4.2          5           1
 K lysine              6.8          8           1
 L leucine             7.6          9           2
 M methionine          4.2          5           1
 N asparagine          0.8          1           1
 P proline             7.6          9           2
 Q glutamine           7.6          9           2
 R arginine            4.2          5           1
 S serine              8.5         10           1
 T threonine           2.5          3           1
 V valine              9.3         11           2
 W tryptophan          2.5          3           1
 Y tyrosine            5.9          7           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC125988 
C16orf11              0.023   hypothetical protein LOC146325 
SPIN3                 0.019   spindlin family, member 3 
SPIN1                 0.014   spindlin 
KIAA1109              0.014   fragile site-associated protein 
BRPF3                 0.005   bromodomain and PHD finger containing, 3 
ZBTB39                0.005   zinc finger and BTB domain containing 39 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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