Guide to the Human Genome
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Name: C1orf43 Sequence: fasta or formatted (253aa) NCBI GI: 148833486
Description:

hypothetical protein LOC25912 isoform 3

Not currently referenced in the text

Other entries for this name:
alt prot {219aa} hypothetical protein LOC25912 isoform 1
alt prot {201aa} hypothetical protein LOC25912 isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.7         17           2
 C cysteine            0.4          1           1
 D aspartate           4.7         12           3
 E glutamate           5.1         13           2
 F phenylalanine       4.0         10           1
 G glycine             5.5         14           1
 H histidine           2.8          7           2
 I isoleucine          4.0         10           1
 K lysine              6.3         16           1
 L leucine            11.9         30           2
 M methionine          2.4          6           1
 N asparagine          4.0         10           1
 P proline             4.0         10           1
 Q glutamine           5.1         13           1
 R arginine            7.5         19           2
 S serine              9.1         23           2
 T threonine           5.5         14           2
 V valine              5.9         15           2
 W tryptophan          0.4          1           1
 Y tyrosine            4.7         12           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   hypothetical protein LOC25912 isoform 3 
C1orf43               0.821   hypothetical protein LOC25912 isoform 1 
C1orf43               0.718   hypothetical protein LOC25912 isoform 2 
HTT                   0.013   huntingtin 
NR4A2                 0.013   nuclear receptor subfamily 4, group A, member 2 [Homo...
KIF2B                 0.008   kinesin family member 2B 
PSD3                  0.008   ADP-ribosylation factor guanine nucleotide factor 6 ...
PSD3                  0.008   ADP-ribosylation factor guanine nucleotide factor 6...
LOC402198             0.008   PREDICTED: similar to hCG1641913 
LOC402198             0.008   PREDICTED: similar to hCG1641913 
LOC402198             0.008   PREDICTED: similar to hCG1641913 
MACF1                 0.008   microfilament and actin filament cross-linker protei...
MACF1                 0.008   microfilament and actin filament cross-linker protei...
TSTA3                 0.008   tissue specific transplantation antigen P35B 
NRBF2                 0.006   nuclear receptor binding factor 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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