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Search of human proteins with 4506661
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4506661 ribosomal protein L7a [Homo sapiens]
(266 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|4506661 ribosomal protein L7a [Homo sapiens] 528 e-150
gi|239758045 PREDICTED: similar to hCG1993567 [Homo sapiens] 54 1e-07
gi|51317376 NHP2 non-histone chromosome protein 2-like 1 [Homo s... 50 2e-06
gi|4826860 NHP2 non-histone chromosome protein 2-like 1 [Homo sa... 50 2e-06
gi|169180189 PREDICTED: similar to hCG1993567 [Homo sapiens] 47 2e-05
gi|169174730 PREDICTED: similar to hCG1993567 [Homo sapiens] 47 2e-05
gi|169177162 PREDICTED: similar to hCG1993567 [Homo sapiens] 47 2e-05
gi|8923444 nucleolar protein family A, member 2 isoform a [Homo ... 46 3e-05
gi|148222745 ribonuclease P/MRP 38 subunit [Homo sapiens] 33 0.20
gi|33859837 ribonuclease P/MRP 38 subunit [Homo sapiens] 33 0.20
gi|148238078 ribonuclease P/MRP 38 subunit [Homo sapiens] 33 0.20
gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Ho... 31 0.98
gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Ho... 31 0.98
gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Ho... 31 0.98
gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Ho... 31 0.98
gi|60685227 SECIS binding protein 2-like [Homo sapiens] 31 1.3
gi|156523968 poly (ADP-ribose) polymerase family, member 1 [Homo... 30 1.7
gi|14249672 protein phosphatase 1, regulatory (inhibitor) subuni... 29 3.7
gi|32130516 serologically defined colon cancer antigen 1 [Homo s... 28 6.4
gi|170016091 odz, odd Oz/ten-m homolog 2 [Homo sapiens] 28 6.4
gi|27597090 suppressor of Ty 6 homolog [Homo sapiens] 28 6.4
gi|91176325 bromodomain adjacent to zinc finger domain, 2A [Homo... 28 8.3
gi|95147342 chromodomain helicase DNA binding protein 9 [Homo sa... 28 8.3
>gi|4506661 ribosomal protein L7a [Homo sapiens]
Length = 266
Score = 528 bits (1360), Expect = e-150
Identities = 266/266 (100%), Positives = 266/266 (100%)
Query: 1 MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRY 60
MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRY
Sbjct: 1 MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRY 60
Query: 61 IRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEK 120
IRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEK
Sbjct: 61 IRLQRQRAILYKRLKVPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARAEK 120
Query: 121 KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVP 180
KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVP
Sbjct: 121 KAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVP 180
Query: 181 YCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGN 240
YCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGN
Sbjct: 181 YCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGGN 240
Query: 241 VLGPKSVARIAKLEKAKAKELATKLG 266
VLGPKSVARIAKLEKAKAKELATKLG
Sbjct: 241 VLGPKSVARIAKLEKAKAKELATKLG 266
>gi|239758045 PREDICTED: similar to hCG1993567 [Homo sapiens]
Length = 112
Score = 53.9 bits (128), Expect = 1e-07
Identities = 30/43 (69%), Positives = 31/43 (72%), Gaps = 4/43 (9%)
Query: 3 KGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDI 45
KGKKAKGKKV P AV+KKQE KVVN FEK FG GQDI
Sbjct: 39 KGKKAKGKKVVPTLAVLKKQETMKVVNLPFEK----FGTGQDI 77
>gi|51317376 NHP2 non-histone chromosome protein 2-like 1 [Homo
sapiens]
Length = 128
Score = 50.4 bits (119), Expect = 2e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 136 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 192
LR G N T + ++ +V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
>gi|4826860 NHP2 non-histone chromosome protein 2-like 1 [Homo
sapiens]
Length = 128
Score = 50.4 bits (119), Expect = 2e-06
Identities = 21/57 (36%), Positives = 33/57 (57%)
Query: 136 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGR 192
LR G N T + ++ +V+A D +P+E+++ LP LC VPY ++ K LGR
Sbjct: 35 LRKGANEATKTLNRGISEFIVMAADAEPLEIILHLPLLCEDKNVPYVFVRSKQALGR 91
>gi|169180189 PREDICTED: similar to hCG1993567 [Homo sapiens]
Length = 89
Score = 47.0 bits (110), Expect = 2e-05
Identities = 28/43 (65%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 3 KGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDI 45
K KKAKGKKV AV+KKQE KVVN FEK FG GQDI
Sbjct: 16 KRKKAKGKKVVLTLAVLKKQETMKVVNLPFEK----FGTGQDI 54
>gi|169174730 PREDICTED: similar to hCG1993567 [Homo sapiens]
Length = 89
Score = 47.0 bits (110), Expect = 2e-05
Identities = 28/43 (65%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 3 KGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDI 45
K KKAKGKKV AV+KKQE KVVN FEK FG GQDI
Sbjct: 16 KRKKAKGKKVVLTLAVLKKQETMKVVNLPFEK----FGTGQDI 54
>gi|169177162 PREDICTED: similar to hCG1993567 [Homo sapiens]
Length = 89
Score = 47.0 bits (110), Expect = 2e-05
Identities = 28/43 (65%), Positives = 29/43 (67%), Gaps = 4/43 (9%)
Query: 3 KGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDI 45
K KKAKGKKV AV+KKQE KVVN FEK FG GQDI
Sbjct: 16 KRKKAKGKKVVLTLAVLKKQETMKVVNLPFEK----FGTGQDI 54
>gi|8923444 nucleolar protein family A, member 2 isoform a [Homo
sapiens]
Length = 153
Score = 46.2 bits (108), Expect = 3e-05
Identities = 26/89 (29%), Positives = 42/89 (47%)
Query: 136 LRAGVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYCIIKGKARLGRLVH 195
+R GV V V + ++V+A D PIE+ LP +C +PY I K LG
Sbjct: 60 IRRGVKEVQKFVNKGEKGIMVLAGDTLPIEVYCHLPVMCEDRNLPYVYIPSKTDLGAAAG 119
Query: 196 RKTCTTVAFTQVNSEDKGALAKLVEAIRT 224
K T V + + E + A + +E +++
Sbjct: 120 SKRPTCVIMVKPHEEYQEAYDECLEEVQS 148
>gi|148222745 ribonuclease P/MRP 38 subunit [Homo sapiens]
Length = 283
Score = 33.5 bits (75), Expect = 0.20
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 16/133 (12%)
Query: 88 DRQTATQLLKLAHKYR----PETKQEKKQRLLARA-------EKKAAGKGDVPTKRPPVL 136
DR A L K+ K + P K+E +++ EKK K V P +
Sbjct: 50 DRLKAIGLQKIEDKKKKNKTPFLKKESREKCSIAVDISENLKEKKTDAKQQVSGWTPAHV 109
Query: 137 RA----GVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYC-IIKGKARLG 191
R GVN VT +E ++ LV++ V P + L L VP C + + R+
Sbjct: 110 RKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIA 169
Query: 192 RLVHRKTCTTVAF 204
++ K +AF
Sbjct: 170 PVIGLKCVLALAF 182
>gi|33859837 ribonuclease P/MRP 38 subunit [Homo sapiens]
Length = 283
Score = 33.5 bits (75), Expect = 0.20
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 16/133 (12%)
Query: 88 DRQTATQLLKLAHKYR----PETKQEKKQRLLARA-------EKKAAGKGDVPTKRPPVL 136
DR A L K+ K + P K+E +++ EKK K V P +
Sbjct: 50 DRLKAIGLQKIEDKKKKNKTPFLKKESREKCSIAVDISENLKEKKTDAKQQVSGWTPAHV 109
Query: 137 RA----GVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYC-IIKGKARLG 191
R GVN VT +E ++ LV++ V P + L L VP C + + R+
Sbjct: 110 RKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIA 169
Query: 192 RLVHRKTCTTVAF 204
++ K +AF
Sbjct: 170 PVIGLKCVLALAF 182
>gi|148238078 ribonuclease P/MRP 38 subunit [Homo sapiens]
Length = 283
Score = 33.5 bits (75), Expect = 0.20
Identities = 35/133 (26%), Positives = 54/133 (40%), Gaps = 16/133 (12%)
Query: 88 DRQTATQLLKLAHKYR----PETKQEKKQRLLARA-------EKKAAGKGDVPTKRPPVL 136
DR A L K+ K + P K+E +++ EKK K V P +
Sbjct: 50 DRLKAIGLQKIEDKKKKNKTPFLKKESREKCSIAVDISENLKEKKTDAKQQVSGWTPAHV 109
Query: 137 RA----GVNTVTTLVENKKAQLVVIAHDVDPIELVVFLPALCRKMGVPYC-IIKGKARLG 191
R GVN VT +E ++ LV++ V P + L L VP C + + R+
Sbjct: 110 RKQLAIGVNEVTRALERRELLLVLVCKSVKPAMITSHLIQLSLSRSVPACQVPRLSERIA 169
Query: 192 RLVHRKTCTTVAF 204
++ K +AF
Sbjct: 170 PVIGLKCVLALAF 182
>gi|13124879 smooth muscle myosin heavy chain 11 isoform SM1A [Homo
sapiens]
Length = 1972
Score = 31.2 bits (69), Expect = 0.98
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 85 QALDRQTAT---QLLKLAHKYRPETKQEKKQRLLARAEKK 121
QA D Q QL + H+Y E + E+KQR LA A KK
Sbjct: 1581 QARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKK 1620
>gi|92091586 smooth muscle myosin heavy chain 11 isoform SM1B [Homo
sapiens]
Length = 1979
Score = 31.2 bits (69), Expect = 0.98
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 85 QALDRQTAT---QLLKLAHKYRPETKQEKKQRLLARAEKK 121
QA D Q QL + H+Y E + E+KQR LA A KK
Sbjct: 1588 QARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKK 1627
>gi|92091583 smooth muscle myosin heavy chain 11 isoform SM2B [Homo
sapiens]
Length = 1945
Score = 31.2 bits (69), Expect = 0.98
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 85 QALDRQTAT---QLLKLAHKYRPETKQEKKQRLLARAEKK 121
QA D Q QL + H+Y E + E+KQR LA A KK
Sbjct: 1588 QARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKK 1627
>gi|13124875 smooth muscle myosin heavy chain 11 isoform SM2A [Homo
sapiens]
Length = 1938
Score = 31.2 bits (69), Expect = 0.98
Identities = 18/40 (45%), Positives = 22/40 (55%), Gaps = 3/40 (7%)
Query: 85 QALDRQTAT---QLLKLAHKYRPETKQEKKQRLLARAEKK 121
QA D Q QL + H+Y E + E+KQR LA A KK
Sbjct: 1581 QARDEQNEEKRRQLQRQLHEYETELEDERKQRALAAAAKK 1620
>gi|60685227 SECIS binding protein 2-like [Homo sapiens]
Length = 1056
Score = 30.8 bits (68), Expect = 1.3
Identities = 30/124 (24%), Positives = 53/124 (42%), Gaps = 10/124 (8%)
Query: 115 LARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKAQLVVIAHDVDPI-------ELV 167
L +++ K V K L G+ VT ++ K + V+I+ + + I E +
Sbjct: 652 LVSFQERIYQKDPVRAKARRRLVMGLREVTKHMKLNKIKCVIISPNCEKIQSKGGLDEAL 711
Query: 168 VFLPALCRKMGVPYCIIKGKARLGRLVHRKTCTTVA--FTQVNSEDK-GALAKLVEAIRT 224
+ A+ R+ +P+ G+ LGR V++ +V F +E L +L E R
Sbjct: 712 YNVIAMAREQEIPFVFALGRKALGRCVNKLVPVSVVGIFNYFGAESLFNKLVELTEEARK 771
Query: 225 NYND 228
Y D
Sbjct: 772 AYKD 775
>gi|156523968 poly (ADP-ribose) polymerase family, member 1 [Homo
sapiens]
Length = 1014
Score = 30.4 bits (67), Expect = 1.7
Identities = 21/86 (24%), Positives = 36/86 (41%), Gaps = 11/86 (12%)
Query: 180 PYCIIKGKARLGRLVHRKTCTTVAFTQVNSEDKGALAKLVEAIRTNYNDRYDEIRRHWGG 239
P C +K + LG F+ + +EDK AL K + +++ + DE+
Sbjct: 160 PGCFVKNREELGFRPEYSASQLKGFSLLATEDKEALKKQLPGVKSEGKRKGDEV------ 213
Query: 240 NVLGPKSVARIAKLEKAKAKELATKL 265
V +AK + K K+ +KL
Sbjct: 214 -----DGVDEVAKKKSKKEKDKDSKL 234
>gi|14249672 protein phosphatase 1, regulatory (inhibitor) subunit
16A [Homo sapiens]
Length = 528
Score = 29.3 bits (64), Expect = 3.7
Identities = 19/76 (25%), Positives = 33/76 (43%), Gaps = 5/76 (6%)
Query: 88 DRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLV 147
D + +LL+L HK+ + + +QR L R +AG ++ V R + T L
Sbjct: 307 DEEVRAKLLELKHKHDALLRAQSRQRSLLRRRTSSAG-----SRGKVVRRVSLTQRTDLY 361
Query: 148 ENKKAQLVVIAHDVDP 163
+ AQ ++ P
Sbjct: 362 RKQHAQEAIVWQQPPP 377
>gi|32130516 serologically defined colon cancer antigen 1 [Homo
sapiens]
Length = 1076
Score = 28.5 bits (62), Expect = 6.4
Identities = 20/88 (22%), Positives = 40/88 (45%), Gaps = 11/88 (12%)
Query: 85 QALDRQTATQLLKLAHKYRPETKQEKK--QRLLARAEKKAAGKG---------DVPTKRP 133
Q + R +++ K+ KY+ + +++++ +LL A KG D P K+
Sbjct: 866 QPMKRGQKSKMKKMKEKYKDQDEEDRELIMKLLGSAGSNKEEKGKKGKKGKTKDEPVKKQ 925
Query: 134 PVLRAGVNTVTTLVENKKAQLVVIAHDV 161
P G V+ ++ + L VI H++
Sbjct: 926 PQKPRGGQRVSDNIKKETPFLEVITHEL 953
>gi|170016091 odz, odd Oz/ten-m homolog 2 [Homo sapiens]
Length = 2765
Score = 28.5 bits (62), Expect = 6.4
Identities = 13/38 (34%), Positives = 24/38 (63%)
Query: 87 LDRQTATQLLKLAHKYRPETKQEKKQRLLARAEKKAAG 124
++ Q +T LL + + P+T E+K R+L +A ++A G
Sbjct: 2659 IEFQYSTLLLSIRYGLTPDTLDEEKARVLDQARQRALG 2696
>gi|27597090 suppressor of Ty 6 homolog [Homo sapiens]
Length = 1726
Score = 28.5 bits (62), Expect = 6.4
Identities = 22/75 (29%), Positives = 37/75 (49%), Gaps = 13/75 (17%)
Query: 93 TQLLKLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKKA 152
T L+L H + T +++R EKKA D+ T + +L + VT EN+ A
Sbjct: 806 TDFLRLPHFTKRRTAWREEER-----EKKAQ---DIETLKKFLLNKKPHVVTVAGENRDA 857
Query: 153 QLVV-----IAHDVD 162
Q+++ I H++D
Sbjct: 858 QMLIEDVKRIVHELD 872
>gi|91176325 bromodomain adjacent to zinc finger domain, 2A [Homo
sapiens]
Length = 1905
Score = 28.1 bits (61), Expect = 8.3
Identities = 41/163 (25%), Positives = 71/163 (43%), Gaps = 18/163 (11%)
Query: 1 MPKGKKAKGKKVAPAPAVVKKQEAKKVVNPLFEKRPKNFGIGQDIQPKRDLTRFVKWPRY 60
+PK K+ +G+ P VK E + RP Q+ + D + K +
Sbjct: 666 VPKVKRGRGR-----PPKVKITELLNKT----DNRPLKKLEAQETLNEEDKAKIAKSKKK 716
Query: 61 IRLQRQRAILYKRLK--VPPAINQFTQALDRQTATQLLKLAHKYRPETKQEKKQRLLARA 118
+R + QR ++ Q T++L ++ A + K A K + +TKQEK + + R
Sbjct: 717 MRQKVQRGECQTTIQGQARNKRKQETKSLKQKEAKKKSK-AEKEKGKTKQEKLKEKVKRE 775
Query: 119 EK---KAAGKGDVPTKRPPVLRAGVNTVT--TLVENKKAQLVV 156
+K K K +V TK P +A T L E ++ Q+++
Sbjct: 776 KKEKVKMKEKEEV-TKAKPACKADKTLATQRRLEERQRQQMIL 817
>gi|95147342 chromodomain helicase DNA binding protein 9 [Homo
sapiens]
Length = 2881
Score = 28.1 bits (61), Expect = 8.3
Identities = 18/55 (32%), Positives = 28/55 (50%), Gaps = 3/55 (5%)
Query: 97 KLAHKYRPETKQEKKQRLLARAEKKAAGKGDVPTKRPPVLRAGVNTVTTLVENKK 151
K K E+KQEK R+++ A KA +G+ + P + + N T VE K+
Sbjct: 512 KQRKKVESESKQEKANRIISEAIAKAKERGE---RNIPRVMSPENFPTASVEGKE 563
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.319 0.135 0.388
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,311,601
Number of Sequences: 37866
Number of extensions: 381362
Number of successful extensions: 1194
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 17
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1172
Number of HSP's gapped (non-prelim): 28
length of query: 266
length of database: 18,247,518
effective HSP length: 100
effective length of query: 166
effective length of database: 14,460,918
effective search space: 2400512388
effective search space used: 2400512388
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.