Search of human proteins with 4506591

Search of human proteins with 4506591

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4506591 retinal pigment epithelium-specific protein 65kDa
[Homo sapiens]
         (533 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4506591 retinal pigment epithelium-specific protein 65kDa [Ho...  1117   0.0  
gi|82617624 beta-carotene dioxygenase 2 isoform a [Homo sapiens]      428   e-120
gi|82617628 beta-carotene dioxygenase 2 isoform b [Homo sapiens]      428   e-120
gi|74027270 beta-carotene 15,15'-monooxygenase [Homo sapiens]         404   e-112
gi|219802834 transmembrane protein 106C isoform a [Homo sapiens]       32   1.5  
gi|13129026 transmembrane protein 106C isoform a [Homo sapiens]        32   1.5  
gi|148886654 polydom [Homo sapiens]                                    31   3.2  
gi|219802857 transmembrane protein 106C isoform b [Homo sapiens]       30   5.5  
gi|219802797 transmembrane protein 106C isoform b [Homo sapiens]       30   5.5  
gi|145553959 elaC homolog 2 [Homo sapiens]                             30   7.2  
gi|239752655 PREDICTED: hypothetical protein [Homo sapiens]            29   9.4  
gi|239747208 PREDICTED: hypothetical protein [Homo sapiens]            29   9.4  
gi|239740999 PREDICTED: hypothetical protein [Homo sapiens]            29   9.4  

>gi|4506591 retinal pigment epithelium-specific protein 65kDa [Homo
           sapiens]
          Length = 533

 Score = 1117 bits (2889), Expect = 0.0
 Identities = 533/533 (100%), Positives = 533/533 (100%)

Query: 1   MSIQVEHPAGGYKKLFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHL 60
           MSIQVEHPAGGYKKLFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHL
Sbjct: 1   MSIQVEHPAGGYKKLFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHL 60

Query: 61  FDGQALLHKFDFKEGHVTYHRRFIRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFF 120
           FDGQALLHKFDFKEGHVTYHRRFIRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFF
Sbjct: 61  FDGQALLHKFDFKEGHVTYHRRFIRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFF 120

Query: 121 SYFRGVEVTDNALVNVYPVGEDYYACTETNFITKINPETLETIKQVDLCNYVSVNGATAH 180
           SYFRGVEVTDNALVNVYPVGEDYYACTETNFITKINPETLETIKQVDLCNYVSVNGATAH
Sbjct: 121 SYFRGVEVTDNALVNVYPVGEDYYACTETNFITKINPETLETIKQVDLCNYVSVNGATAH 180

Query: 181 PHIENDGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYV 240
           PHIENDGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYV
Sbjct: 181 PHIENDGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYV 240

Query: 241 HSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYL 300
           HSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYL
Sbjct: 241 HSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYL 300

Query: 301 NNKYRTSPFNLFHHINTYEDNGFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKA 360
           NNKYRTSPFNLFHHINTYEDNGFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKA
Sbjct: 301 NNKYRTSPFNLFHHINTYEDNGFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKA 360

Query: 361 PQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQ 420
           PQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQ
Sbjct: 361 PQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQ 420

Query: 421 INYQKYCGKPYTYAYGLGLNHFVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALE 480
           INYQKYCGKPYTYAYGLGLNHFVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALE
Sbjct: 421 INYQKYCGKPYTYAYGLGLNHFVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALE 480

Query: 481 EDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLFKKS 533
           EDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLFKKS
Sbjct: 481 EDDGVVLSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLFKKS 533


>gi|82617624 beta-carotene dioxygenase 2 isoform a [Homo sapiens]
          Length = 579

 Score =  428 bits (1100), Expect = e-120
 Identities = 224/524 (42%), Positives = 312/524 (59%), Gaps = 12/524 (2%)

Query: 15  LFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKE 74
           L  TVEE    ++A V G  P WL GSLLR GPG FE G + + H FDG ALLH+F   +
Sbjct: 57  LLTTVEEAPRGISARVWGHFPKWLNGSLLRIGPGKFEFGKDKYNHWFDGMALLHQFRMAK 116

Query: 75  GHVTYHRRFIRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYF----RGVEVTD 130
           G VTY  +F+++D Y     + RIVI+EFGT A PDPCKN+F RF S F    +   +TD
Sbjct: 117 GTVTYRSKFLQSDTYKANSAKNRIVISEFGTLALPDPCKNVFERFMSRFELPGKAAAMTD 176

Query: 131 NALVNVYPVGEDYYACTETNFITKINPETLETIKQVDLCNYVSVNGATAHPHIENDGTVY 190
           N  VN      DYY CTETNF+ K++ ETLE  ++VD   +++VNGATAHPH + DGT Y
Sbjct: 177 NTNVNYVRYKGDYYLCTETNFMNKVDIETLEKTEKVDWSKFIAVNGATAHPHYDLDGTAY 236

Query: 191 NIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYI 250
           N+GN FG  +  +Y ++++PP + D  + I   +++     +++ KPSY HSFG+T NYI
Sbjct: 237 NMGNSFGP-YGFSYKVIRVPPEKVDLGETIHGVQVICSIASTEKGKPSYYHSFGMTRNYI 295

Query: 251 VFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYLNNKYRTSPFN 310
           +F+E P+K+NL+K  +S  + G  + D            H+ +K+  + L  +Y + PF 
Sbjct: 296 IFIEQPLKMNLWKIATS-KIRGKAFSDGISWEPQCNTRFHVVEKRTGQLLPGRYYSKPFV 354

Query: 311 LFHHINTYEDNGFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVL 370
            FH IN +ED G +I+DLCC      +  Y  L NLR+  E + +    A +   RR+VL
Sbjct: 355 TFHQINAFEDQGCVIIDLCCQDNGRTLEVY-QLQNLRKAGEGLDQVHNSAAKSFPRRFVL 413

Query: 371 PLNID-KADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQ---AFEFPQINYQKY 426
           PLN+   A  G NL  L  T+A+A+  +D TIW   E L     +     EFPQI Y ++
Sbjct: 414 PLNVSLNAPEGDNLSPLSYTSASAVKQADGTIWCSHENLHQEDLEKEGGIEFPQIYYDRF 473

Query: 427 CGKPYTYAYGLGLNHFVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALEEDDGVV 486
            GK Y + YG G  H V D L K++V  K   VW+E   YPSEP+FV  P   EED GV+
Sbjct: 474 SGKKYHFFYGCGFRHLVGDSLIKVDVVNKTLKVWREDGFYPSEPVFVPAPGTNEEDGGVI 533

Query: 487 LSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLF 530
           LSVV++P   +   ++L+L+AK+  E+ RAEV + +P  FHG F
Sbjct: 534 LSVVITPNQNES-NFILVLDAKNFEELGRAEVPVQMPYGFHGTF 576


>gi|82617628 beta-carotene dioxygenase 2 isoform b [Homo sapiens]
          Length = 545

 Score =  428 bits (1100), Expect = e-120
 Identities = 224/524 (42%), Positives = 312/524 (59%), Gaps = 12/524 (2%)

Query: 15  LFETVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKE 74
           L  TVEE    ++A V G  P WL GSLLR GPG FE G + + H FDG ALLH+F   +
Sbjct: 23  LLTTVEEAPRGISARVWGHFPKWLNGSLLRIGPGKFEFGKDKYNHWFDGMALLHQFRMAK 82

Query: 75  GHVTYHRRFIRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYF----RGVEVTD 130
           G VTY  +F+++D Y     + RIVI+EFGT A PDPCKN+F RF S F    +   +TD
Sbjct: 83  GTVTYRSKFLQSDTYKANSAKNRIVISEFGTLALPDPCKNVFERFMSRFELPGKAAAMTD 142

Query: 131 NALVNVYPVGEDYYACTETNFITKINPETLETIKQVDLCNYVSVNGATAHPHIENDGTVY 190
           N  VN      DYY CTETNF+ K++ ETLE  ++VD   +++VNGATAHPH + DGT Y
Sbjct: 143 NTNVNYVRYKGDYYLCTETNFMNKVDIETLEKTEKVDWSKFIAVNGATAHPHYDLDGTAY 202

Query: 191 NIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYI 250
           N+GN FG  +  +Y ++++PP + D  + I   +++     +++ KPSY HSFG+T NYI
Sbjct: 203 NMGNSFGP-YGFSYKVIRVPPEKVDLGETIHGVQVICSIASTEKGKPSYYHSFGMTRNYI 261

Query: 251 VFVETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYLNNKYRTSPFN 310
           +F+E P+K+NL+K  +S  + G  + D            H+ +K+  + L  +Y + PF 
Sbjct: 262 IFIEQPLKMNLWKIATS-KIRGKAFSDGISWEPQCNTRFHVVEKRTGQLLPGRYYSKPFV 320

Query: 311 LFHHINTYEDNGFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVL 370
            FH IN +ED G +I+DLCC      +  Y  L NLR+  E + +    A +   RR+VL
Sbjct: 321 TFHQINAFEDQGCVIIDLCCQDNGRTLEVY-QLQNLRKAGEGLDQVHNSAAKSFPRRFVL 379

Query: 371 PLNID-KADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQ---AFEFPQINYQKY 426
           PLN+   A  G NL  L  T+A+A+  +D TIW   E L     +     EFPQI Y ++
Sbjct: 380 PLNVSLNAPEGDNLSPLSYTSASAVKQADGTIWCSHENLHQEDLEKEGGIEFPQIYYDRF 439

Query: 427 CGKPYTYAYGLGLNHFVPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALEEDDGVV 486
            GK Y + YG G  H V D L K++V  K   VW+E   YPSEP+FV  P   EED GV+
Sbjct: 440 SGKKYHFFYGCGFRHLVGDSLIKVDVVNKTLKVWREDGFYPSEPVFVPAPGTNEEDGGVI 499

Query: 487 LSVVVSPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLF 530
           LSVV++P   +   ++L+L+AK+  E+ RAEV + +P  FHG F
Sbjct: 500 LSVVITPNQNES-NFILVLDAKNFEELGRAEVPVQMPYGFHGTF 542


>gi|74027270 beta-carotene 15,15'-monooxygenase [Homo sapiens]
          Length = 547

 Score =  404 bits (1037), Expect = e-112
 Identities = 206/519 (39%), Positives = 321/519 (61%), Gaps = 19/519 (3%)

Query: 20  EELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFDGQALLHKFDFKEGHVTY 79
           +E   P+ A VTG+IP WL G+LLR GPG+  VG   + H FDG ALLH F  ++G V Y
Sbjct: 10  KEQLEPVRAKVTGKIPAWLQGTLLRNGPGMHTVGESRYNHWFDGLALLHSFTIRDGEVYY 69

Query: 80  HRRFIRTDAYVRAMTEKRIVITEFGTCAFPDPCKNIFSRFFSYFRGV--EVTDNALVNVY 137
             +++R+D Y   +   RIV++EFGT A+PDPCKNIFS+ FSY      + TDN L+N+ 
Sbjct: 70  RSKYLRSDTYNTNIEANRIVVSEFGTMAYPDPCKNIFSKAFSYLSHTIPDFTDNCLINIM 129

Query: 138 PVGEDYYACTETNFITKINPETLETIKQVDLCNYVSVNGATAHPHIENDGTVYNIGNCFG 197
             GED+YA +ETN+I KINP+TLET+++VD   YV+VN AT+HPH +  G V N+G    
Sbjct: 130 KCGEDFYATSETNYIRKINPQTLETLEKVDYRKYVAVNLATSHPHYDEAGNVLNMGTSIV 189

Query: 198 KNFSIAYNIVKIPPL----QADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTPNYIVFV 253
           +     Y I KIP      +   + P   +E+    P      PSY HSFG+T NY++F+
Sbjct: 190 EKGKTKYVIFKIPATVPEGKKQGKSPWKHTEVFCSIPSRSLLSPSYYHSFGVTENYVIFL 249

Query: 254 ETPVKINLFKFLSSWSLWGANYMDCFESNETMGVWLHIADKKRKKYLNNKYRTSPFNLFH 313
           E P ++++ K  +++ +   ++  C   +     ++HI D++ ++ +  K+ T    +FH
Sbjct: 250 EQPFRLDILKMATAY-IRRMSWASCLAFHREEKTYIHIIDQRTRQPVQTKFYTDAMVVFH 308

Query: 314 HINTYEDNGFLIVDLCCWKGFEFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLN 373
           H+N YE++G ++ D+  ++    +Y   YLANL +++   K+N+R    P +RR+ +PL+
Sbjct: 309 HVNAYEEDGCIVFDVIAYED-NSLYQLFYLANLNQDF---KENSRLTSVPTLRRFAVPLH 364

Query: 374 IDK-ADTGKNLVTLPNTTATAILCSDETIWLEPEVLFSGPRQAFEFPQINYQKYCGKPYT 432
           +DK A+ G NL+ + +TTATA+   D  ++ +PE L+ G     E P++NY  + GK Y 
Sbjct: 365 VDKNAEVGTNLIKVASTTATALKEEDGQVYCQPEFLYEG----LELPRVNY-AHNGKQYR 419

Query: 433 YAYGLGLNHF-VPDRLCKLNVKTKETWVWQEPDSYPSEPIFVSHPDALEEDDGVVLSVVV 491
           Y +  G+    +P ++ K ++ TK +  W+E D +P+EP+FV  P A +EDDGV+LS +V
Sbjct: 420 YVFATGVQWSPIPTKIIKYDILTKSSLKWREDDCWPAEPLFVPAPGAKDEDDGVILSAIV 479

Query: 492 SPGAGQKPAYLLILNAKDLSEVARAEVEINIPVTFHGLF 530
           S    QK  +LLIL+AK  +E+ARA V++++ +  HGLF
Sbjct: 480 STDP-QKLPFLLILDAKSFTELARASVDVDMHMDLHGLF 517


>gi|219802834 transmembrane protein 106C isoform a [Homo sapiens]
          Length = 250

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 13/82 (15%)

Query: 202 IAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTP-----NYIVFVETP 256
           +  N+  IPP      +   K+E+   F        SYV+ F   P     N ++F+ T 
Sbjct: 170 VTTNVSLIPPRSEQLVNFTGKAEMGGPF--------SYVYFFCTVPEILVHNIVIFMRTS 221

Query: 257 VKINLFKFLSSWSLWGANYMDC 278
           VKI+    ++  SL   +Y+DC
Sbjct: 222 VKISYIGLMTQSSLETHHYVDC 243


>gi|13129026 transmembrane protein 106C isoform a [Homo sapiens]
          Length = 250

 Score = 32.0 bits (71), Expect = 1.5
 Identities = 23/82 (28%), Positives = 37/82 (45%), Gaps = 13/82 (15%)

Query: 202 IAYNIVKIPPLQADKEDPISKSEIVVQFPCSDRFKPSYVHSFGLTP-----NYIVFVETP 256
           +  N+  IPP      +   K+E+   F        SYV+ F   P     N ++F+ T 
Sbjct: 170 VTTNVSLIPPRSEQLVNFTGKAEMGGPF--------SYVYFFCTVPEILVHNIVIFMRTS 221

Query: 257 VKINLFKFLSSWSLWGANYMDC 278
           VKI+    ++  SL   +Y+DC
Sbjct: 222 VKISYIGLMTQSSLETHHYVDC 243


>gi|148886654 polydom [Homo sapiens]
          Length = 3571

 Score = 30.8 bits (68), Expect = 3.2
 Identities = 42/187 (22%), Positives = 61/187 (32%), Gaps = 37/187 (19%)

Query: 105  TCAFPDPCKNIFSRFFSYFRGVEVTDNALVNVYPVGEDYYACTETNFITKINPETLETIK 164
            +C  P P +N F     ++ G  VT       Y +G+    CT+      ++P  L+   
Sbjct: 1689 SCGVPPPLENGFHSADDFYAGSTVTYQCNNGYYLLGDSRMFCTDNGSWNGVSPSCLD--- 1745

Query: 165  QVDLCNYVSVNGATAHPHIENDGTVYNIGNCFGKNFSIAYNIVKIPPLQADKEDPISKSE 224
             VD C      G+    H           +C   N   +Y    +PP   D ++      
Sbjct: 1746 -VDEC----AVGSDCSEH----------ASCL--NVDGSYICSCVPPYTGDGKN------ 1782

Query: 225  IVVQFPCSDRFKPSYVHSFGLTPNYIVFVETPVKINLFKFLSSWSLWGANYMDCFESNET 284
                  C     P   HS G    Y V  E       F     + L G   + C ES E 
Sbjct: 1783 CAEPIKCKAPGNPENGHSSG--EIYTVGAEV-----TFSCQEGYQLMGVTKITCLESGE- 1834

Query: 285  MGVWLHI 291
               W H+
Sbjct: 1835 ---WNHL 1838


>gi|219802857 transmembrane protein 106C isoform b [Homo sapiens]
          Length = 231

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 238 SYVHSFGLTP-----NYIVFVETPVKINLFKFLSSWSLWGANYMDC 278
           SYV+ F   P     N ++F+ T VKI+    ++  SL   +Y+DC
Sbjct: 179 SYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDC 224


>gi|219802797 transmembrane protein 106C isoform b [Homo sapiens]
          Length = 231

 Score = 30.0 bits (66), Expect = 5.5
 Identities = 16/46 (34%), Positives = 25/46 (54%), Gaps = 5/46 (10%)

Query: 238 SYVHSFGLTP-----NYIVFVETPVKINLFKFLSSWSLWGANYMDC 278
           SYV+ F   P     N ++F+ T VKI+    ++  SL   +Y+DC
Sbjct: 179 SYVYFFCTVPEILVHNIVIFMRTSVKISYIGLMTQSSLETHHYVDC 224


>gi|145553959 elaC homolog 2 [Homo sapiens]
          Length = 826

 Score = 29.6 bits (65), Expect = 7.2
 Identities = 17/66 (25%), Positives = 32/66 (48%)

Query: 335 EFVYNYLYLANLRENWEEVKKNARKAPQPEVRRYVLPLNIDKADTGKNLVTLPNTTATAI 394
           EF+   L L N +++ +E +++A+  P P  +R   P  I         + + N +AT +
Sbjct: 445 EFIVEALQLPNFQQSVQEYRRSAQDGPAPAEKRSQYPEIIFLGTGSAIPMKIRNVSATLV 504

Query: 395 LCSDET 400
             S +T
Sbjct: 505 NISPDT 510


>gi|239752655 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 249

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 18  TVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFD 62
           T  +L + + AH+    P+WL G+ L C P     G EP +   D
Sbjct: 117 TSRQLQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVD 161


>gi|239747208 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 249

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 18  TVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFD 62
           T  +L + + AH+    P+WL G+ L C P     G EP +   D
Sbjct: 117 TSRQLQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVD 161


>gi|239740999 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 249

 Score = 29.3 bits (64), Expect = 9.4
 Identities = 15/45 (33%), Positives = 22/45 (48%)

Query: 18  TVEELSSPLTAHVTGRIPLWLTGSLLRCGPGLFEVGSEPFYHLFD 62
           T  +L + + AH+    P+WL G+ L C P     G EP +   D
Sbjct: 117 TSRQLQARMPAHLRREEPVWLEGTKLCCQPLPTTPGREPGFVCVD 161


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.139    0.438 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 22,045,172
Number of Sequences: 37866
Number of extensions: 1049366
Number of successful extensions: 1876
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 6
Number of HSP's that attempted gapping in prelim test: 1846
Number of HSP's gapped (non-prelim): 13
length of query: 533
length of database: 18,247,518
effective HSP length: 107
effective length of query: 426
effective length of database: 14,195,856
effective search space: 6047434656
effective search space used: 6047434656
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.