Search of human proteins with 4504523

Search of human proteins with 4504523

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|4504523 heat shock 10kDa protein 1 [Homo sapiens]
         (102 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|4504523 heat shock 10kDa protein 1 [Homo sapiens]                  202   6e-53
gi|169210012 PREDICTED: similar to heat shock 10 kDa protein 1 [...   189   5e-49
gi|239752758 PREDICTED: similar to heat shock 10kDa protein 1 [H...   172   4e-44
gi|239753444 PREDICTED: similar to heat shock 10kDa protein 1 [H...   165   6e-42
gi|239748009 PREDICTED: hypothetical protein XP_002346492 [Homo ...   165   6e-42
gi|239741907 PREDICTED: hypothetical protein XP_002342349 [Homo ...   165   6e-42
gi|4885217 excision repair cross-complementing rodent repair def...    27   3.5  
gi|169166999 PREDICTED: hypothetical protein [Homo sapiens]            27   3.5  
gi|6005757 chromatin-specific transcription elongation factor la...    27   4.5  
gi|194272142 myosin IXB isoform 2 [Homo sapiens]                       27   4.5  
gi|33356170 myosin IXB isoform 1 [Homo sapiens]                        27   4.5  
gi|167614502 protein phosphatase 1, regulatory (inhibitor) subun...    26   7.7  

>gi|4504523 heat shock 10kDa protein 1 [Homo sapiens]
          Length = 102

 Score =  202 bits (513), Expect = 6e-53
 Identities = 102/102 (100%), Positives = 102/102 (100%)

Query: 1   MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEI 60
           MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEI
Sbjct: 1   MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEI 60

Query: 61  QPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102
           QPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD
Sbjct: 61  QPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102


>gi|169210012 PREDICTED: similar to heat shock 10 kDa protein 1
           [Homo sapiens]
          Length = 103

 Score =  189 bits (479), Expect = 5e-49
 Identities = 96/103 (93%), Positives = 101/103 (98%), Gaps = 1/103 (0%)

Query: 1   MAGQAFRK-FLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGE 59
           MAGQAFRK FLPLF+RVLVERSAAETVT+GGIMLPEKSQGKVLQA VVAVGSGSKGKGGE
Sbjct: 1   MAGQAFRKKFLPLFERVLVERSAAETVTRGGIMLPEKSQGKVLQAIVVAVGSGSKGKGGE 60

Query: 60  IQPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102
           IQPVS+KVGDKVLLPE+GGTKV+LDDKDYFLFRDGDILGKYVD
Sbjct: 61  IQPVSMKVGDKVLLPEHGGTKVILDDKDYFLFRDGDILGKYVD 103


>gi|239752758 PREDICTED: similar to heat shock 10kDa protein 1 [Homo
           sapiens]
          Length = 102

 Score =  172 bits (437), Expect = 4e-44
 Identities = 88/102 (86%), Positives = 92/102 (90%)

Query: 1   MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEI 60
           MAGQ FRKFLPL  +   ERS AETVTKGGIMLPEKSQGKV QATVVAVGSGSKGKGGE 
Sbjct: 1   MAGQTFRKFLPLRKKRKFERSVAETVTKGGIMLPEKSQGKVFQATVVAVGSGSKGKGGEG 60

Query: 61  QPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDILGKYVD 102
           QPVS KVGDKVLLP+YGGTKVVLDDKDYFLFRDGDILGK+V+
Sbjct: 61  QPVSRKVGDKVLLPQYGGTKVVLDDKDYFLFRDGDILGKHVE 102


>gi|239753444 PREDICTED: similar to heat shock 10kDa protein 1
          [Homo sapiens]
          Length = 175

 Score =  165 bits (418), Expect = 6e-42
 Identities = 85/97 (87%), Positives = 88/97 (90%)

Query: 1  MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEI 60
          MAGQAFRKFL LFDRV VER A  TVTKGGIMLPEKSQGKVLQA  VAVGSGSKGKGGEI
Sbjct: 1  MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60

Query: 61 QPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDIL 97
          QPVS++VGDK LL EYGGT+VVLDDKDYFLFRDGDIL
Sbjct: 61 QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDIL 97


>gi|239748009 PREDICTED: hypothetical protein XP_002346492 [Homo
          sapiens]
          Length = 244

 Score =  165 bits (418), Expect = 6e-42
 Identities = 85/97 (87%), Positives = 88/97 (90%)

Query: 1  MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEI 60
          MAGQAFRKFL LFDRV VER A  TVTKGGIMLPEKSQGKVLQA  VAVGSGSKGKGGEI
Sbjct: 1  MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60

Query: 61 QPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDIL 97
          QPVS++VGDK LL EYGGT+VVLDDKDYFLFRDGDIL
Sbjct: 61 QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDIL 97


>gi|239741907 PREDICTED: hypothetical protein XP_002342349 [Homo
          sapiens]
          Length = 175

 Score =  165 bits (418), Expect = 6e-42
 Identities = 85/97 (87%), Positives = 88/97 (90%)

Query: 1  MAGQAFRKFLPLFDRVLVERSAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKGGEI 60
          MAGQAFRKFL LFDRV VER A  TVTKGGIMLPEKSQGKVLQA  VAVGSGSKGKGGEI
Sbjct: 1  MAGQAFRKFLLLFDRVFVERIATTTVTKGGIMLPEKSQGKVLQAKGVAVGSGSKGKGGEI 60

Query: 61 QPVSVKVGDKVLLPEYGGTKVVLDDKDYFLFRDGDIL 97
          QPVS++VGDK LL EYGGT+VVLDDKDYFLFRDGDIL
Sbjct: 61 QPVSMRVGDKFLLLEYGGTRVVLDDKDYFLFRDGDIL 97


>gi|4885217 excision repair cross-complementing rodent repair
           deficiency, complementation group 4 [Homo sapiens]
          Length = 916

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 10/20 (50%), Positives = 17/20 (85%)

Query: 56  KGGEIQPVSVKVGDKVLLPE 75
           +G +I+PV+++VGD +L PE
Sbjct: 702 RGIDIEPVTLEVGDYILTPE 721


>gi|169166999 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 263

 Score = 26.9 bits (58), Expect = 3.5
 Identities = 19/63 (30%), Positives = 28/63 (44%), Gaps = 5/63 (7%)

Query: 3  GQAFRKFLPLFDRVLVER-----SAAETVTKGGIMLPEKSQGKVLQATVVAVGSGSKGKG 57
          G+ F  FL   + V+ E       AAE     G  +  +  G V+ A VV+ G+G  G  
Sbjct: 23 GECFHLFLLCPENVVTEVVVWCVGAAEVSEVSGARVVGEELGVVIGAAVVSCGAGEDGGA 82

Query: 58 GEI 60
          G +
Sbjct: 83 GVV 85


>gi|6005757 chromatin-specific transcription elongation factor large
           subunit [Homo sapiens]
          Length = 1047

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 17/65 (26%), Positives = 33/65 (50%), Gaps = 6/65 (9%)

Query: 28  KGGIMLPEKSQGKVLQATVVAVGSG------SKGKGGEIQPVSVKVGDKVLLPEYGGTKV 81
           +G +++  K+Q K+ +  V ++  G       +GK  E +  ++ +GD VL+ E G   V
Sbjct: 358 EGSLVINSKNQYKLKKGMVFSINLGFSDLTNKEGKKPEEKTYALFIGDTVLVDEDGPATV 417

Query: 82  VLDDK 86
           +   K
Sbjct: 418 LTSVK 422


>gi|194272142 myosin IXB isoform 2 [Homo sapiens]
          Length = 2022

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 16   VLVERSAAETVTKGGIMLPEK-SQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLP 74
            ++VE  A  T  K     P+  + GKV + T   + SGS   G   +P S+ +  +V  P
Sbjct: 1204 LVVETEAENTSQKQPTEQPQAMAVGKVSEETEKTLPSGSPRPGQLERPTSLALDSRVSPP 1263

Query: 75   EYGGTKVVLDDK 86
              G      +DK
Sbjct: 1264 APGSAPETPEDK 1275


>gi|33356170 myosin IXB isoform 1 [Homo sapiens]
          Length = 2157

 Score = 26.6 bits (57), Expect = 4.5
 Identities = 21/72 (29%), Positives = 32/72 (44%), Gaps = 1/72 (1%)

Query: 16   VLVERSAAETVTKGGIMLPEK-SQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDKVLLP 74
            ++VE  A  T  K     P+  + GKV + T   + SGS   G   +P S+ +  +V  P
Sbjct: 1204 LVVETEAENTSQKQPTEQPQAMAVGKVSEETEKTLPSGSPRPGQLERPTSLALDSRVSPP 1263

Query: 75   EYGGTKVVLDDK 86
              G      +DK
Sbjct: 1264 APGSAPETPEDK 1275


>gi|167614502 protein phosphatase 1, regulatory (inhibitor) subunit
           3A [Homo sapiens]
          Length = 1122

 Score = 25.8 bits (55), Expect = 7.7
 Identities = 24/75 (32%), Positives = 31/75 (41%), Gaps = 4/75 (5%)

Query: 12  LFDRVLVERSAAETVTKGGIMLPEK-SQGKVLQATVVAVGSGSKGKGGEIQPVSVKVGDK 70
           LF R L   S+AE+  KG     EK S G             +    GEI+P        
Sbjct: 369 LFQRSLSPSSSAESSVKGDFYCNEKYSSG---DDCTHQPSEETTSNMGEIKPSLGDTSSD 425

Query: 71  VLLPEYGGTKVVLDD 85
            L+  + G+K VLDD
Sbjct: 426 ELVQLHTGSKEVLDD 440


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.317    0.140    0.394 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,601,692
Number of Sequences: 37866
Number of extensions: 145046
Number of successful extensions: 362
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 7
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 354
Number of HSP's gapped (non-prelim): 12
length of query: 102
length of database: 18,247,518
effective HSP length: 73
effective length of query: 29
effective length of database: 15,483,300
effective search space: 449015700
effective search space used: 449015700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.6 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.