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Search of human proteins with 4502969
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|4502969 catechol-O-methyltransferase isoform MB-COMT [Homo
sapiens]
(271 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|205830453 catechol-O-methyltransferase isoform MB-COMT [Homo ... 553 e-158
gi|205830451 catechol-O-methyltransferase isoform MB-COMT [Homo ... 553 e-158
gi|4502969 catechol-O-methyltransferase isoform MB-COMT [Homo sa... 553 e-158
gi|6466450 catechol-O-methyltransferase isoform S-COMT [Homo sap... 451 e-127
gi|223718164 leucine rich transmembrane and 0-methyltransferase ... 168 5e-42
gi|223718159 leucine rich transmembrane and 0-methyltransferase ... 168 5e-42
gi|223718169 leucine rich transmembrane and 0-methyltransferase ... 164 8e-41
gi|31542747 catechol-O-methyltransferase domain containing 1 [Ho... 40 0.003
gi|87159829 N-6 adenine-specific DNA methyltransferase 1 isoform... 30 1.7
gi|37537710 La ribonucleoprotein domain family, member 6 isoform... 30 2.2
gi|151301096 trimethylguanosine synthase homolog [Homo sapiens] 30 2.2
gi|22035616 oxysterol-binding protein-like protein 7 [Homo sapiens] 30 2.2
gi|13491166 pumilio 1 isoform 2 [Homo sapiens] 29 3.8
gi|66932909 pumilio 1 isoform 1 [Homo sapiens] 29 3.8
gi|55743086 alpha-1,3-mannosyltransferase ALG3 isoform d [Homo s... 29 5.0
gi|5031953 alpha-1,3-mannosyltransferase ALG3 isoform a [Homo sa... 29 5.0
gi|87159831 N-6 adenine-specific DNA methyltransferase 1 isoform... 29 5.0
gi|169208036 PREDICTED: similar to Golgin subfamily A member 8-l... 28 8.5
gi|210147567 hypothetical protein LOC220081 [Homo sapiens] 28 8.5
>gi|205830453 catechol-O-methyltransferase isoform MB-COMT [Homo
sapiens]
Length = 271
Score = 553 bits (1426), Expect = e-158
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRIL 60
MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRIL
Sbjct: 1 MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRIL 60
Query: 61 NHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCG 120
NHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCG
Sbjct: 61 NHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCG 120
Query: 121 YSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKY 180
YSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKY
Sbjct: 121 YSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKY 180
Query: 181 DVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFE 240
DVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFE
Sbjct: 181 DVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFE 240
Query: 241 CTHYQSFLEYREVVDGLEKAIYKGPGSEAGP 271
CTHYQSFLEYREVVDGLEKAIYKGPGSEAGP
Sbjct: 241 CTHYQSFLEYREVVDGLEKAIYKGPGSEAGP 271
>gi|205830451 catechol-O-methyltransferase isoform MB-COMT [Homo
sapiens]
Length = 271
Score = 553 bits (1426), Expect = e-158
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRIL 60
MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRIL
Sbjct: 1 MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRIL 60
Query: 61 NHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCG 120
NHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCG
Sbjct: 61 NHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCG 120
Query: 121 YSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKY 180
YSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKY
Sbjct: 121 YSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKY 180
Query: 181 DVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFE 240
DVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFE
Sbjct: 181 DVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFE 240
Query: 241 CTHYQSFLEYREVVDGLEKAIYKGPGSEAGP 271
CTHYQSFLEYREVVDGLEKAIYKGPGSEAGP
Sbjct: 241 CTHYQSFLEYREVVDGLEKAIYKGPGSEAGP 271
>gi|4502969 catechol-O-methyltransferase isoform MB-COMT [Homo
sapiens]
Length = 271
Score = 553 bits (1426), Expect = e-158
Identities = 271/271 (100%), Positives = 271/271 (100%)
Query: 1 MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRIL 60
MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRIL
Sbjct: 1 MPEAPPLLLAAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRIL 60
Query: 61 NHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCG 120
NHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCG
Sbjct: 61 NHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCG 120
Query: 121 YSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKY 180
YSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKY
Sbjct: 121 YSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQDIIPQLKKKY 180
Query: 181 DVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFE 240
DVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFE
Sbjct: 181 DVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFE 240
Query: 241 CTHYQSFLEYREVVDGLEKAIYKGPGSEAGP 271
CTHYQSFLEYREVVDGLEKAIYKGPGSEAGP
Sbjct: 241 CTHYQSFLEYREVVDGLEKAIYKGPGSEAGP 271
>gi|6466450 catechol-O-methyltransferase isoform S-COMT [Homo
sapiens]
Length = 221
Score = 451 bits (1161), Expect = e-127
Identities = 221/221 (100%), Positives = 221/221 (100%)
Query: 51 MGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPS 110
MGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPS
Sbjct: 1 MGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPS 60
Query: 111 VLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQ 170
VLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQ
Sbjct: 61 VLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQ 120
Query: 171 DIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFL 230
DIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFL
Sbjct: 121 DIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFL 180
Query: 231 AHVRGSSCFECTHYQSFLEYREVVDGLEKAIYKGPGSEAGP 271
AHVRGSSCFECTHYQSFLEYREVVDGLEKAIYKGPGSEAGP
Sbjct: 181 AHVRGSSCFECTHYQSFLEYREVVDGLEKAIYKGPGSEAGP 221
>gi|223718164 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 4 [Homo sapiens]
Length = 291
Score = 168 bits (425), Expect = 5e-42
Identities = 94/259 (36%), Positives = 150/259 (57%), Gaps = 6/259 (2%)
Query: 10 AAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRILNHVLQHAEP 69
A L L L+V LL+ RH+ L +L+ + + L G E+R ++VL HA P
Sbjct: 37 AIALAFLPLVVTLLVRYRHYFRLLV----RTVLLRSLRDCLSGLRIEERAFSYVLTHALP 92
Query: 70 GNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARL 129
G+ +L +D + + E+ ++G KG+I+ +++E P+ +LELG YCGYS + +AR
Sbjct: 93 GDPGHILTTLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLELGTYCGYSTLLIARA 152
Query: 130 LSPGARLITIEINPDCAAITQRMVDFAGVKD-KVTLVVGASQDIIPQLKKKYDVDTLDMV 188
L PG RL+T+E +P AA+ ++++ AG + V L+VG+S+D+IP L+ +Y + D+V
Sbjct: 153 LPPGGRLLTVERDPRTAAVAEKLIRLAGFDEHMVELIVGSSEDVIPCLRTQYQLSRADLV 212
Query: 189 FLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFEC-THYQSF 247
L H YL D LLE LL G +LAD+V+ PGAP FL + + + C H+
Sbjct: 213 LLAHRPRCYLRDLQLLEAHALLPAGATVLADHVLFPGAPRFLQYAKSCGRYRCRLHHTGL 272
Query: 248 LEYREVVDGLEKAIYKGPG 266
++ + DG+ + Y GPG
Sbjct: 273 PDFPAIKDGIAQLTYAGPG 291
>gi|223718159 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 4 [Homo sapiens]
Length = 291
Score = 168 bits (425), Expect = 5e-42
Identities = 94/259 (36%), Positives = 150/259 (57%), Gaps = 6/259 (2%)
Query: 10 AAVLLGLVLLVVLLLLLRHWGWGLCLIGWNEFILQPIHNLLMGDTKEQRILNHVLQHAEP 69
A L L L+V LL+ RH+ L +L+ + + L G E+R ++VL HA P
Sbjct: 37 AIALAFLPLVVTLLVRYRHYFRLLV----RTVLLRSLRDCLSGLRIEERAFSYVLTHALP 92
Query: 70 GNAQSVLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARL 129
G+ +L +D + + E+ ++G KG+I+ +++E P+ +LELG YCGYS + +AR
Sbjct: 93 GDPGHILTTLDHWSSRCEYLSHMGPVKGQILMRLVEEKAPACVLELGTYCGYSTLLIARA 152
Query: 130 LSPGARLITIEINPDCAAITQRMVDFAGVKD-KVTLVVGASQDIIPQLKKKYDVDTLDMV 188
L PG RL+T+E +P AA+ ++++ AG + V L+VG+S+D+IP L+ +Y + D+V
Sbjct: 153 LPPGGRLLTVERDPRTAAVAEKLIRLAGFDEHMVELIVGSSEDVIPCLRTQYQLSRADLV 212
Query: 189 FLDHWKDRYLPDTLLLEECGLLRKGTVLLADNVICPGAPDFLAHVRGSSCFEC-THYQSF 247
L H YL D LLE LL G +LAD+V+ PGAP FL + + + C H+
Sbjct: 213 LLAHRPRCYLRDLQLLEAHALLPAGATVLADHVLFPGAPRFLQYAKSCGRYRCRLHHTGL 272
Query: 248 LEYREVVDGLEKAIYKGPG 266
++ + DG+ + Y GPG
Sbjct: 273 PDFPAIKDGIAQLTYAGPG 291
>gi|223718169 leucine rich transmembrane and 0-methyltransferase
domain containing isoform 6 [Homo sapiens]
Length = 251
Score = 164 bits (415), Expect = 8e-41
Identities = 86/228 (37%), Positives = 138/228 (60%), Gaps = 3/228 (1%)
Query: 42 ILQP-IHNLLMGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKGKIV 100
+LQP + + L G E+R ++VL HA PG+ +L +D + + E+ ++G KG+I+
Sbjct: 24 VLQPSLRDCLSGLRIEERAFSYVLTHALPGDPGHILTTLDHWSSRCEYLSHMGPVKGQIL 83
Query: 101 DAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKD 160
+++E P+ +LELG YCGYS + +AR L PG RL+T+E +P AA+ ++++ AG +
Sbjct: 84 MRLVEEKAPACVLELGTYCGYSTLLIARALPPGGRLLTVERDPRTAAVAEKLIRLAGFDE 143
Query: 161 -KVTLVVGASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEECGLLRKGTVLLAD 219
V L+VG+S+D+IP L+ +Y + D+V L H YL D LLE LL G +LAD
Sbjct: 144 HMVELIVGSSEDVIPCLRTQYQLSRADLVLLAHRPRCYLRDLQLLEAHALLPAGATVLAD 203
Query: 220 NVICPGAPDFLAHVRGSSCFEC-THYQSFLEYREVVDGLEKAIYKGPG 266
+V+ PGAP FL + + + C H+ ++ + DG+ + Y GPG
Sbjct: 204 HVLFPGAPRFLQYAKSCGRYRCRLHHTGLPDFPAIKDGIAQLTYAGPG 251
>gi|31542747 catechol-O-methyltransferase domain containing 1 [Homo
sapiens]
Length = 262
Score = 39.7 bits (91), Expect = 0.003
Identities = 34/135 (25%), Positives = 60/135 (44%), Gaps = 6/135 (4%)
Query: 108 QPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVG 167
Q L+LG + GYSA+ +A L R++T E++ + + + A + K+ L +
Sbjct: 102 QAKKALDLGTFTGYSALALALALPADGRVVTCEVDAQPPELGRPLWRQAEAEHKIDLRLK 161
Query: 168 ASQDIIPQLKKKYDVDTLDMVFLDHWKDRYLPDTLLLEEC-GLLRKGTVLLADNVICPGA 226
+ + + +L + T D+ +D K+ + E C LLR G +L V+ G
Sbjct: 162 PALETLDELLAAGEAGTFDVAVVDADKENC---SAYYERCLQLLRPGGILAVLRVLWRG- 217
Query: 227 PDFLAHVRGSSCFEC 241
L +G EC
Sbjct: 218 -KVLQPPKGDVAAEC 231
>gi|87159829 N-6 adenine-specific DNA methyltransferase 1 isoform 1
[Homo sapiens]
Length = 214
Score = 30.4 bits (67), Expect = 1.7
Identities = 18/72 (25%), Positives = 37/72 (51%), Gaps = 1/72 (1%)
Query: 111 VLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGVKDKVTLVVGASQ 170
+ LE+G+ G + +A ++ P A + +INP+ AA T V + ++ +
Sbjct: 48 ICLEVGSGSGVVSAFLASMIGPQALYMCTDINPEAAACTLETARCNKVHIQ-PVITDLVK 106
Query: 171 DIIPQLKKKYDV 182
++P+L +K D+
Sbjct: 107 GLLPRLTEKVDL 118
>gi|37537710 La ribonucleoprotein domain family, member 6 isoform 1
[Homo sapiens]
Length = 491
Score = 30.0 bits (66), Expect = 2.2
Identities = 21/77 (27%), Positives = 35/77 (45%), Gaps = 12/77 (15%)
Query: 75 VLEAIDTYCEQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGA 134
+L D Y K WA+ K G++ + V++ LL+L + + + R+L PG
Sbjct: 185 MLLVYDLYLSPKLWALATPQKNGRVQEKVMEH-----LLKL--FGTFGVISSVRILKPGR 237
Query: 135 RLITIEINPDCAAITQR 151
E+ PD I+ R
Sbjct: 238 -----ELPPDIRRISSR 249
>gi|151301096 trimethylguanosine synthase homolog [Homo sapiens]
Length = 853
Score = 30.0 bits (66), Expect = 2.2
Identities = 19/69 (27%), Positives = 35/69 (50%), Gaps = 3/69 (4%)
Query: 99 IVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAITQRMVDFAGV 158
I V Q + V+++ A+CG + L+ G R+I I+I+P A+ + + G+
Sbjct: 681 IAGRVSQSFKCDVVVD--AFCGVGGNTIQFALT-GMRVIAIDIDPVKIALARNNAEVYGI 737
Query: 159 KDKVTLVVG 167
DK+ + G
Sbjct: 738 ADKIEFICG 746
>gi|22035616 oxysterol-binding protein-like protein 7 [Homo sapiens]
Length = 842
Score = 30.0 bits (66), Expect = 2.2
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 5/63 (7%)
Query: 38 WNEFILQPIHNLLMGDTKEQRILNHVLQHAEPGNAQSVLEAIDTYCEQKEWAMNVGDKKG 97
WN+ + IHN+L G QR + H + S T+C+ K W+ NV + +G
Sbjct: 634 WNK-VTSCIHNVLSG----QRWIEHYGEVLIRNTQDSSCHCKITFCKAKYWSSNVHEVQG 688
Query: 98 KIV 100
++
Sbjct: 689 AVL 691
>gi|13491166 pumilio 1 isoform 2 [Homo sapiens]
Length = 1186
Score = 29.3 bits (64), Expect = 3.8
Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 20/127 (15%)
Query: 42 ILQPIHN---LLMGDTKEQRILNHVLQHAEPGNAQSVLEAID---TYCEQKEWAMNVGDK 95
IL+ +H L+ D ++ HVL+H P + ++ I Q ++A NV +K
Sbjct: 1025 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEK 1084
Query: 96 ---------KGKIVDAVIQ----EHQPSVLLELGAYCGYSAVRMARLLSPGARLITI-EI 141
+ ++D V H + Y Y +M + PG R I + +I
Sbjct: 1085 CVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 1144
Query: 142 NPDCAAI 148
P A +
Sbjct: 1145 RPHIATL 1151
>gi|66932909 pumilio 1 isoform 1 [Homo sapiens]
Length = 1188
Score = 29.3 bits (64), Expect = 3.8
Identities = 29/127 (22%), Positives = 50/127 (39%), Gaps = 20/127 (15%)
Query: 42 ILQPIHN---LLMGDTKEQRILNHVLQHAEPGNAQSVLEAID---TYCEQKEWAMNVGDK 95
IL+ +H L+ D ++ HVL+H P + ++ I Q ++A NV +K
Sbjct: 1027 ILEELHQHTEQLVQDQYGNYVIQHVLEHGRPEDKSKIVAEIRGNVLVLSQHKFASNVVEK 1086
Query: 96 ---------KGKIVDAVIQ----EHQPSVLLELGAYCGYSAVRMARLLSPGARLITI-EI 141
+ ++D V H + Y Y +M + PG R I + +I
Sbjct: 1087 CVTHASRTERAVLIDEVCTMNDGPHSALYTMMKDQYANYVVQKMIDVAEPGQRKIVMHKI 1146
Query: 142 NPDCAAI 148
P A +
Sbjct: 1147 RPHIATL 1153
>gi|55743086 alpha-1,3-mannosyltransferase ALG3 isoform d [Homo
sapiens]
Length = 390
Score = 28.9 bits (63), Expect = 5.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 12 VLLGLVLLVVLLLLLRHWGWGLC 34
V + L+ L + LLL + WGWG C
Sbjct: 129 VAMVLLFLSINLLLAQRWGWGCC 151
>gi|5031953 alpha-1,3-mannosyltransferase ALG3 isoform a [Homo
sapiens]
Length = 438
Score = 28.9 bits (63), Expect = 5.0
Identities = 11/23 (47%), Positives = 15/23 (65%)
Query: 12 VLLGLVLLVVLLLLLRHWGWGLC 34
V + L+ L + LLL + WGWG C
Sbjct: 177 VAMVLLFLSINLLLAQRWGWGCC 199
>gi|87159831 N-6 adenine-specific DNA methyltransferase 1 isoform 2
[Homo sapiens]
Length = 186
Score = 28.9 bits (63), Expect = 5.0
Identities = 13/39 (33%), Positives = 23/39 (58%)
Query: 111 VLLELGAYCGYSAVRMARLLSPGARLITIEINPDCAAIT 149
+ LE+G+ G + +A ++ P A + +INP+ AA T
Sbjct: 48 ICLEVGSGSGVVSAFLASMIGPQALYMCTDINPEAAACT 86
>gi|169208036 PREDICTED: similar to Golgin subfamily A member 8-like
protein 1 isoform 2 [Homo sapiens]
Length = 601
Score = 28.1 bits (61), Expect = 8.5
Identities = 19/54 (35%), Positives = 26/54 (48%), Gaps = 4/54 (7%)
Query: 167 GASQDIIPQLKKKYDVDTL---DMVFLDHWKDRYLPDT-LLLEECGLLRKGTVL 216
G S + LK+K D+ L ++ F+ HW+DR T LL E G K L
Sbjct: 424 GESSSFMDHLKEKADLSELVKKELCFIHHWRDRRHQKTHHLLSEPGGCAKDAAL 477
>gi|210147567 hypothetical protein LOC220081 [Homo sapiens]
Length = 696
Score = 28.1 bits (61), Expect = 8.5
Identities = 18/61 (29%), Positives = 31/61 (50%), Gaps = 2/61 (3%)
Query: 84 EQKEWAMNVGDKKGKIVDAVIQEHQPSVLLELGAYCGYSAVRMARLLSPGARLITIEINP 143
EQK+ +N+G + ++ V+ E + +LE A G +A ++ LL RL+ P
Sbjct: 611 EQKQICLNLGTRYKFVIPEVLSEMKKKTILE--AEPGPTAQKIRVLLGKMNRLLNYATTP 668
Query: 144 D 144
D
Sbjct: 669 D 669
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.323 0.141 0.438
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,984,332
Number of Sequences: 37866
Number of extensions: 480649
Number of successful extensions: 1164
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 12
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 1145
Number of HSP's gapped (non-prelim): 22
length of query: 271
length of database: 18,247,518
effective HSP length: 101
effective length of query: 170
effective length of database: 14,423,052
effective search space: 2451918840
effective search space used: 2451918840
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.