Guide to the Human Genome
Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help
Name: CMA1 Sequence: fasta or formatted (247aa) NCBI GI: 4502907
Description:

chymase 1, mast cell preproprotein

Referenced in:

Neutrophils, Eosinophils, and Basophils
Serine Proteases

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.9         17           2
 C cysteine            3.2          8           1
 D aspartate           3.2          8           1
 E glutamate           4.0         10           3
 F phenylalanine       4.9         12           1
 G glycine             8.5         21           2
 H histidine           3.6          9           2
 I isoleucine          4.9         12           2
 K lysine              5.7         14           1
 L leucine            12.1         30           3
 M methionine          2.0          5           1
 N asparagine          3.6          9           1
 P proline             6.9         17           2
 Q glutamine           3.6          9           1
 R arginine            6.1         15           2
 S serine              6.1         15           1
 T threonine           6.1         15           1
 V valine              5.3         13           1
 W tryptophan          1.2          3           1
 Y tyrosine            2.0          5           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   chymase 1, mast cell preproprotein 
CTSG                  0.458   cathepsin G preproprotein 
GZMB                  0.448   granzyme B precursor 
GZMH                  0.413   granzyme H 
PRTN3                 0.281   myeloblastin 
CFD                   0.277   complement factor D preproprotein 
GZMA                  0.275   granzyme A precursor 
KLK7                  0.267   stratum corneum chymotryptic enzyme preproprotein [H...
KLK7                  0.267   stratum corneum chymotryptic enzyme preproprotein [Ho...
KLK2                  0.255   kallikrein 2, prostatic isoform 1 
KLK8                  0.244   kallikrein 8 isoform 2 
KLK8                  0.244   kallikrein 8 isoform 1 preproprotein 
PRSS3                 0.238   mesotrypsin isoform 1 preproprotein 
PRSS3                 0.238   mesotrypsin isoform 2 preproprotein 
KLK3                  0.238   prostate specific antigen isoform 1 preproprotein [Ho...
PRSS1                 0.234   protease, serine, 1 preproprotein 
KLK14                 0.232   kallikrein 14 preproprotein 
KLK4                  0.228   kallikrein-related peptidase 4 preproprotein 
PRSSL1                0.226   protease, serine-like 1 
GZMK                  0.226   granzyme K precursor 
KLK13                 0.226   kallikrein 13 precursor 
KLK15                 0.222   kallikrein-related peptidase 15 isoform 4 preproprot...
KLK1                  0.218   kallikrein 1 preproprotein 
PRSS2                 0.211   protease, serine, 2 preproprotein 
KLK6                  0.207   kallikrein-related peptidase 6 isoform A preproprote...
KLK6                  0.207   kallikrein-related peptidase 6 isoform A preproprotei...
KLK11                 0.205   kallikrein 11 isoform 1 preproprotein 
KLK11                 0.205   kallikrein 11 isoform 2 precursor 
KLK11                 0.205   kallikrein 11 isoform 1 preproprotein 
KLK12                 0.201   kallikrein 12 isoform 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


Home | Table of Contents | Search text | Search genes | Search sequences | Purchase | FAQ | Blog | Help

Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

CSHL Press