Guide to the Human Genome
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Name: RBPJ Sequence: fasta or formatted (500aa) NCBI GI: 42560227
Description:

recombining binding protein suppressor of hairless isoform 1

Referenced in:

Notch Pathway
Pancreas and Insulin

Other entries for this name:
alt prot [486aa] recombining binding protein suppressor of hairless isoform 4
alt prot [485aa] recombining binding protein suppressor of hairless isoform 3
alt prot [487aa] recombining binding protein suppressor of hairless isoform 2
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             6.0         30           2
 C cysteine            2.6         13           1
 D aspartate           4.8         24           3
 E glutamate           6.6         33           2
 F phenylalanine       3.8         19           2
 G glycine             7.0         35           3
 H histidine           2.0         10           1
 I isoleucine          4.2         21           2
 K lysine              6.2         31           4
 L leucine             7.2         36           2
 M methionine          2.8         14           1
 N asparagine          4.2         21           1
 P proline             6.4         32           3
 Q glutamine           4.6         23           2
 R arginine            5.0         25           1
 S serine              8.6         43           2
 T threonine           6.6         33           1
 V valine              6.8         34           2
 W tryptophan          1.2          6           1
 Y tyrosine            3.4         17           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   recombining binding protein suppressor of hairless i... 
RBPJ                  0.959   recombining binding protein suppressor of hairless i...
RBPJ                  0.956   recombining binding protein suppressor of hairless i...
RBPJ                  0.956   recombining binding protein suppressor of hairless i...
RBPJL                 0.464   recombining binding protein L 
FOXA3                 0.006   forkhead box A3 
CC2D1A                0.005   coiled-coil and C2 domain containing 1A 
MXRA5                 0.005   adlican 
MDGA2                 0.005   MAM domain containing 1 isoform 1 
MDGA2                 0.005   MAM domain containing 1 isoform 2 
LOC100131251          0.004   PREDICTED: hypothetical protein 
LOC100131251          0.004   PREDICTED: hypothetical protein 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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