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Search of human proteins with 41406071
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|41406071 H2A histone family, member V isoform 5 [Homo
sapiens]
(90 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|41406071 H2A histone family, member V isoform 5 [Homo sapiens] 174 1e-44
gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens] 155 5e-39
gi|4504255 H2A histone family, member Z [Homo sapiens] 152 4e-38
gi|41406067 H2A histone family, member V isoform 3 [Homo sapiens] 125 7e-30
gi|20357599 H2A histone family, member V isoform 2 [Homo sapiens] 115 6e-27
gi|24638446 histone cluster 2, H2ac [Homo sapiens] 82 1e-16
gi|106775678 histone cluster 2, H2aa4 [Homo sapiens] 81 2e-16
gi|4504251 histone cluster 2, H2aa3 [Homo sapiens] 81 2e-16
gi|29553970 H2A histone family, member J [Homo sapiens] 80 3e-16
gi|10800132 histone cluster 1, H2ag [Homo sapiens] 80 4e-16
gi|4504239 histone cluster 1, H2ai [Homo sapiens] 80 4e-16
gi|18105045 histone cluster 1, H2ah [Homo sapiens] 80 4e-16
gi|4504241 histone cluster 1, H2ak [Homo sapiens] 80 4e-16
gi|4504245 histone cluster 1, H2ac [Homo sapiens] 80 4e-16
gi|15617199 histone cluster 3, H2a [Homo sapiens] 80 4e-16
gi|4504249 histone cluster 1, H2am [Homo sapiens] 80 4e-16
gi|4504243 histone cluster 1, H2al [Homo sapiens] 80 4e-16
gi|10800144 histone cluster 1, H2aj [Homo sapiens] 80 4e-16
gi|10800130 histone cluster 1, H2ad [Homo sapiens] 80 4e-16
gi|19557656 histone cluster 1, H2ab [Homo sapiens] 79 1e-15
gi|10645195 histone cluster 1, H2ae [Homo sapiens] 79 1e-15
gi|25092737 histone cluster 1, H2aa [Homo sapiens] 78 1e-15
gi|4504253 H2A histone family, member X [Homo sapiens] 78 2e-15
gi|28195394 histone cluster 2, H2ab [Homo sapiens] 78 2e-15
gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens] 72 9e-14
gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens] 72 9e-14
gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens] 72 9e-14
gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens] 72 9e-14
gi|8923920 H2A histone family, member Y2 [Homo sapiens] 70 4e-13
gi|41406069 H2A histone family, member V isoform 4 [Homo sapiens] 55 2e-08
>gi|41406071 H2A histone family, member V isoform 5 [Homo sapiens]
Length = 90
Score = 174 bits (442), Expect = 1e-44
Identities = 90/90 (100%), Positives = 90/90 (100%)
Query: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQVLELAGNASKDLKVKRITPRHLQLAIRGDEELD 60
MAGGKAGKDSGKAKAKAVSRSQRAGLQVLELAGNASKDLKVKRITPRHLQLAIRGDEELD
Sbjct: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQVLELAGNASKDLKVKRITPRHLQLAIRGDEELD 60
Query: 61 SLIKATIAGGGVIPHIHKSLIGKKGQQKTA 90
SLIKATIAGGGVIPHIHKSLIGKKGQQKTA
Sbjct: 61 SLIKATIAGGGVIPHIHKSLIGKKGQQKTA 90
>gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens]
Length = 128
Score = 155 bits (393), Expect = 5e-39
Identities = 90/128 (70%), Positives = 90/128 (70%), Gaps = 38/128 (29%)
Query: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQ--------------------------------- 27
MAGGKAGKDSGKAKAKAVSRSQRAGLQ
Sbjct: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60
Query: 28 -----VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG 82
VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG
Sbjct: 61 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG 120
Query: 83 KKGQQKTA 90
KKGQQKTA
Sbjct: 121 KKGQQKTA 128
>gi|4504255 H2A histone family, member Z [Homo sapiens]
Length = 128
Score = 152 bits (385), Expect = 4e-38
Identities = 88/127 (69%), Positives = 88/127 (69%), Gaps = 38/127 (29%)
Query: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQ--------------------------------- 27
MAGGKAGKDSGKAK KAVSRSQRAGLQ
Sbjct: 1 MAGGKAGKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILE 60
Query: 28 -----VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG 82
VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG
Sbjct: 61 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIG 120
Query: 83 KKGQQKT 89
KKGQQKT
Sbjct: 121 KKGQQKT 127
>gi|41406067 H2A histone family, member V isoform 3 [Homo sapiens]
Length = 102
Score = 125 bits (314), Expect = 7e-30
Identities = 63/64 (98%), Positives = 64/64 (100%)
Query: 27 QVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQ 86
+VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQ
Sbjct: 39 EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQ 98
Query: 87 QKTA 90
QKTA
Sbjct: 99 QKTA 102
>gi|20357599 H2A histone family, member V isoform 2 [Homo sapiens]
Length = 114
Score = 115 bits (289), Expect = 6e-27
Identities = 70/108 (64%), Positives = 70/108 (64%), Gaps = 38/108 (35%)
Query: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQ--------------------------------- 27
MAGGKAGKDSGKAKAKAVSRSQRAGLQ
Sbjct: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILE 60
Query: 28 -----VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 70
VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG
Sbjct: 61 YLTAEVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGG 108
>gi|24638446 histone cluster 2, H2ac [Homo sapiens]
Length = 129
Score = 81.6 bits (200), Expect = 1e-16
Identities = 54/122 (44%), Positives = 64/122 (52%), Gaps = 38/122 (31%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA SRS RAGLQ +L
Sbjct: 5 GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGQQK 88
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ KK +
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESH 124
Query: 89 TA 90
A
Sbjct: 125 KA 126
>gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]
Length = 130
Score = 80.9 bits (198), Expect = 2e-16
Identities = 53/116 (45%), Positives = 62/116 (53%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA SRS RAGLQ +L
Sbjct: 5 GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
>gi|4504251 histone cluster 2, H2aa3 [Homo sapiens]
Length = 130
Score = 80.9 bits (198), Expect = 2e-16
Identities = 53/116 (45%), Positives = 62/116 (53%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA SRS RAGLQ +L
Sbjct: 5 GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
>gi|29553970 H2A histone family, member J [Homo sapiens]
Length = 129
Score = 80.5 bits (197), Expect = 3e-16
Identities = 55/122 (45%), Positives = 65/122 (53%), Gaps = 39/122 (31%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GK +AKA SRS RAGLQ +L
Sbjct: 5 GKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGQ-Q 87
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ KK + Q
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESQ 124
Query: 88 KT 89
KT
Sbjct: 125 KT 126
>gi|10800132 histone cluster 1, H2ag [Homo sapiens]
Length = 130
Score = 79.7 bits (195), Expect = 4e-16
Identities = 52/116 (44%), Positives = 62/116 (53%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA +RS RAGLQ +L
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
>gi|4504239 histone cluster 1, H2ai [Homo sapiens]
Length = 130
Score = 79.7 bits (195), Expect = 4e-16
Identities = 52/116 (44%), Positives = 62/116 (53%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA +RS RAGLQ +L
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
>gi|18105045 histone cluster 1, H2ah [Homo sapiens]
Length = 128
Score = 79.7 bits (195), Expect = 4e-16
Identities = 52/116 (44%), Positives = 62/116 (53%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA +RS RAGLQ +L
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
>gi|4504241 histone cluster 1, H2ak [Homo sapiens]
Length = 130
Score = 79.7 bits (195), Expect = 4e-16
Identities = 52/116 (44%), Positives = 62/116 (53%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA +RS RAGLQ +L
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
>gi|4504245 histone cluster 1, H2ac [Homo sapiens]
Length = 130
Score = 79.7 bits (195), Expect = 4e-16
Identities = 52/116 (44%), Positives = 62/116 (53%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA SRS RAGLQ +L
Sbjct: 5 GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
>gi|15617199 histone cluster 3, H2a [Homo sapiens]
Length = 130
Score = 79.7 bits (195), Expect = 4e-16
Identities = 52/116 (44%), Positives = 62/116 (53%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA SRS RAGLQ +L
Sbjct: 5 GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
>gi|4504249 histone cluster 1, H2am [Homo sapiens]
Length = 130
Score = 79.7 bits (195), Expect = 4e-16
Identities = 52/116 (44%), Positives = 62/116 (53%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA +RS RAGLQ +L
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
>gi|4504243 histone cluster 1, H2al [Homo sapiens]
Length = 130
Score = 79.7 bits (195), Expect = 4e-16
Identities = 52/116 (44%), Positives = 62/116 (53%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA +RS RAGLQ +L
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
>gi|10800144 histone cluster 1, H2aj [Homo sapiens]
Length = 128
Score = 79.7 bits (195), Expect = 4e-16
Identities = 52/116 (44%), Positives = 62/116 (53%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA +RS RAGLQ +L
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
>gi|10800130 histone cluster 1, H2ad [Homo sapiens]
Length = 130
Score = 79.7 bits (195), Expect = 4e-16
Identities = 52/116 (44%), Positives = 62/116 (53%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA +RS RAGLQ +L
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
>gi|19557656 histone cluster 1, H2ab [Homo sapiens]
Length = 130
Score = 78.6 bits (192), Expect = 1e-15
Identities = 51/116 (43%), Positives = 62/116 (53%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA +RS RAGLQ +L
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
>gi|10645195 histone cluster 1, H2ae [Homo sapiens]
Length = 130
Score = 78.6 bits (192), Expect = 1e-15
Identities = 51/116 (43%), Positives = 62/116 (53%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA +RS RAGLQ +L
Sbjct: 5 GKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ + TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120
>gi|25092737 histone cluster 1, H2aa [Homo sapiens]
Length = 131
Score = 78.2 bits (191), Expect = 1e-15
Identities = 52/116 (44%), Positives = 61/116 (52%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AK+ SRS RAGLQ +L
Sbjct: 5 GKQGGKARAKSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNAS+D K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120
>gi|4504253 H2A histone family, member X [Homo sapiens]
Length = 143
Score = 77.8 bits (190), Expect = 2e-15
Identities = 52/116 (44%), Positives = 61/116 (52%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA SRS RAGLQ +L
Sbjct: 5 GKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNA++D K RI PRHLQLAIR DEEL+ L+ TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120
>gi|28195394 histone cluster 2, H2ab [Homo sapiens]
Length = 130
Score = 77.8 bits (190), Expect = 2e-15
Identities = 51/116 (43%), Positives = 61/116 (52%), Gaps = 38/116 (32%)
Query: 7 GKDSGKAKAKAVSRSQRAGLQ-------------------------------------VL 29
GK GKA+AKA SRS RAGLQ +L
Sbjct: 5 GKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEIL 64
Query: 30 ELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 84
ELAGNA++D K RI PRHLQLA+R DEEL+ L+ TIA GGV+P+I L+ KK
Sbjct: 65 ELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120
>gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]
Length = 371
Score = 72.0 bits (175), Expect = 9e-14
Identities = 35/63 (55%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 27 QVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKG 85
++LELAGNA++D K R+TPRH+ LA+ DEEL+ L+K TIA GGV+P+IH L+ KK
Sbjct: 59 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118
Query: 86 QQK 88
K
Sbjct: 119 GSK 121
>gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]
Length = 371
Score = 72.0 bits (175), Expect = 9e-14
Identities = 35/63 (55%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 27 QVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKG 85
++LELAGNA++D K R+TPRH+ LA+ DEEL+ L+K TIA GGV+P+IH L+ KK
Sbjct: 59 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118
Query: 86 QQK 88
K
Sbjct: 119 GSK 121
>gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens]
Length = 372
Score = 72.0 bits (175), Expect = 9e-14
Identities = 35/63 (55%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 27 QVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKG 85
++LELAGNA++D K R+TPRH+ LA+ DEEL+ L+K TIA GGV+P+IH L+ KK
Sbjct: 59 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118
Query: 86 QQK 88
K
Sbjct: 119 GSK 121
>gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens]
Length = 369
Score = 72.0 bits (175), Expect = 9e-14
Identities = 35/63 (55%), Positives = 47/63 (74%), Gaps = 1/63 (1%)
Query: 27 QVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKG 85
++LELAGNA++D K R+TPRH+ LA+ DEEL+ L+K TIA GGV+P+IH L+ KK
Sbjct: 59 EILELAGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKR 118
Query: 86 QQK 88
K
Sbjct: 119 GSK 121
>gi|8923920 H2A histone family, member Y2 [Homo sapiens]
Length = 372
Score = 70.1 bits (170), Expect = 4e-13
Identities = 34/59 (57%), Positives = 44/59 (74%), Gaps = 1/59 (1%)
Query: 27 QVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 84
++LELAGNA++D K RI PRH+ LA+ DEEL+ L+K TIA GGV+P IH L+ KK
Sbjct: 59 EILELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKK 117
>gi|41406069 H2A histone family, member V isoform 4 [Homo sapiens]
Length = 66
Score = 54.7 bits (130), Expect = 2e-08
Identities = 27/27 (100%), Positives = 27/27 (100%)
Query: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQ 27
MAGGKAGKDSGKAKAKAVSRSQRAGLQ
Sbjct: 1 MAGGKAGKDSGKAKAKAVSRSQRAGLQ 27
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.130 0.349
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,018,568
Number of Sequences: 37866
Number of extensions: 97920
Number of successful extensions: 315
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 40
Number of HSP's successfully gapped in prelim test: 1
Number of HSP's that attempted gapping in prelim test: 228
Number of HSP's gapped (non-prelim): 64
length of query: 90
length of database: 18,247,518
effective HSP length: 62
effective length of query: 28
effective length of database: 15,899,826
effective search space: 445195128
effective search space used: 445195128
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 54 (25.4 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.