Search of human proteins with 41406067

Search of human proteins with 41406067

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|41406067 H2A histone family, member V isoform 3 [Homo
sapiens]
         (102 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|41406067 H2A histone family, member V isoform 3 [Homo sapiens]     201   1e-52
gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens]      199   5e-52
gi|4504255 H2A histone family, member Z [Homo sapiens]                196   4e-51
gi|20357599 H2A histone family, member V isoform 2 [Homo sapiens]     159   6e-40
gi|41406071 H2A histone family, member V isoform 5 [Homo sapiens]     125   7e-30
gi|29553970 H2A histone family, member J [Homo sapiens]               111   1e-25
gi|24638446 histone cluster 2, H2ac [Homo sapiens]                    111   1e-25
gi|10800130 histone cluster 1, H2ad [Homo sapiens]                    111   1e-25
gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]                  110   2e-25
gi|4504251 histone cluster 2, H2aa3 [Homo sapiens]                    110   2e-25
gi|10800132 histone cluster 1, H2ag [Homo sapiens]                    110   2e-25
gi|4504239 histone cluster 1, H2ai [Homo sapiens]                     110   2e-25
gi|18105045 histone cluster 1, H2ah [Homo sapiens]                    110   2e-25
gi|4504241 histone cluster 1, H2ak [Homo sapiens]                     110   2e-25
gi|19557656 histone cluster 1, H2ab [Homo sapiens]                    110   2e-25
gi|15617199 histone cluster 3, H2a [Homo sapiens]                     110   2e-25
gi|10645195 histone cluster 1, H2ae [Homo sapiens]                    110   2e-25
gi|4504249 histone cluster 1, H2am [Homo sapiens]                     110   2e-25
gi|4504243 histone cluster 1, H2al [Homo sapiens]                     110   2e-25
gi|10800144 histone cluster 1, H2aj [Homo sapiens]                    110   2e-25
gi|4504245 histone cluster 1, H2ac [Homo sapiens]                     109   5e-25
gi|25092737 histone cluster 1, H2aa [Homo sapiens]                    108   7e-25
gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]      107   2e-24
gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]     107   2e-24
gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens]     107   2e-24
gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens]     107   2e-24
gi|28195394 histone cluster 2, H2ab [Homo sapiens]                    107   2e-24
gi|4504253 H2A histone family, member X [Homo sapiens]                107   3e-24
gi|8923920 H2A histone family, member Y2 [Homo sapiens]               104   1e-23
gi|41406069 H2A histone family, member V isoform 4 [Homo sapiens]      80   3e-16

>gi|41406067 H2A histone family, member V isoform 3 [Homo sapiens]
          Length = 102

 Score =  201 bits (510), Expect = 1e-52
 Identities = 102/102 (100%), Positives = 102/102 (100%)

Query: 1   MFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 60
           MFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH
Sbjct: 1   MFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 60

Query: 61  LQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTA 102
           LQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTA
Sbjct: 61  LQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTA 102


>gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens]
          Length = 128

 Score =  199 bits (505), Expect = 5e-52
 Identities = 101/101 (100%), Positives = 101/101 (100%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 28  FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 87

Query: 62  QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTA 102
           QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTA
Sbjct: 88  QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKTA 128


>gi|4504255 H2A histone family, member Z [Homo sapiens]
          Length = 128

 Score =  196 bits (497), Expect = 4e-51
 Identities = 99/100 (99%), Positives = 100/100 (100%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGRIHRHLK+RTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 28  FPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 87

Query: 62  QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKT 101
           QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKT
Sbjct: 88  QLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQQKT 127


>gi|20357599 H2A histone family, member V isoform 2 [Homo sapiens]
          Length = 114

 Score =  159 bits (401), Expect = 6e-40
 Identities = 81/81 (100%), Positives = 81/81 (100%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL
Sbjct: 28  FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 87

Query: 62  QLAIRGDEELDSLIKATIAGG 82
           QLAIRGDEELDSLIKATIAGG
Sbjct: 88  QLAIRGDEELDSLIKATIAGG 108


>gi|41406071 H2A histone family, member V isoform 5 [Homo sapiens]
          Length = 90

 Score =  125 bits (314), Expect = 7e-30
 Identities = 63/64 (98%), Positives = 64/64 (100%)

Query: 39  EVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQ 98
           +VLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQ
Sbjct: 27  QVLELAGNASKDLKVKRITPRHLQLAIRGDEELDSLIKATIAGGGVIPHIHKSLIGKKGQ 86

Query: 99  QKTA 102
           QKTA
Sbjct: 87  QKTA 90


>gi|29553970 H2A histone family, member J [Homo sapiens]
          Length = 129

 Score =  111 bits (278), Expect = 1e-25
 Identities = 64/102 (62%), Positives = 77/102 (75%), Gaps = 3/102 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGQ-QKT 101
           QLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK + QKT
Sbjct: 85  QLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESQKT 126


>gi|24638446 histone cluster 2, H2ac [Homo sapiens]
          Length = 129

 Score =  111 bits (278), Expect = 1e-25
 Identities = 62/102 (60%), Positives = 75/102 (73%), Gaps = 2/102 (1%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGQQKTA 102
           QLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK +   A
Sbjct: 85  QLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESHKA 126


>gi|10800130 histone cluster 1, H2ad [Homo sapiens]
          Length = 130

 Score =  111 bits (278), Expect = 1e-25
 Identities = 62/96 (64%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    S  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 85  QLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]
          Length = 130

 Score =  110 bits (276), Expect = 2e-25
 Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 85  QLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|4504251 histone cluster 2, H2aa3 [Homo sapiens]
          Length = 130

 Score =  110 bits (276), Expect = 2e-25
 Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYAE-RVGAGAPVYMAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 85  QLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|10800132 histone cluster 1, H2ag [Homo sapiens]
          Length = 130

 Score =  110 bits (275), Expect = 2e-25
 Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 85  QLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|4504239 histone cluster 1, H2ai [Homo sapiens]
          Length = 130

 Score =  110 bits (275), Expect = 2e-25
 Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 85  QLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|18105045 histone cluster 1, H2ah [Homo sapiens]
          Length = 128

 Score =  110 bits (275), Expect = 2e-25
 Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 85  QLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|4504241 histone cluster 1, H2ak [Homo sapiens]
          Length = 130

 Score =  110 bits (275), Expect = 2e-25
 Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 85  QLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|19557656 histone cluster 1, H2ab [Homo sapiens]
          Length = 130

 Score =  110 bits (275), Expect = 2e-25
 Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    S  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLAIR DEEL+ L+ + TIA GGV+P+I   L+ KK
Sbjct: 85  QLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120


>gi|15617199 histone cluster 3, H2a [Homo sapiens]
          Length = 130

 Score =  110 bits (275), Expect = 2e-25
 Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    S  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLAIR DEEL+ L+ + TIA GGV+P+I   L+ KK
Sbjct: 85  QLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120


>gi|10645195 histone cluster 1, H2ae [Homo sapiens]
          Length = 130

 Score =  110 bits (275), Expect = 2e-25
 Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    S  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYSE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLAIR DEEL+ L+ + TIA GGV+P+I   L+ KK
Sbjct: 85  QLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120


>gi|4504249 histone cluster 1, H2am [Homo sapiens]
          Length = 130

 Score =  110 bits (275), Expect = 2e-25
 Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 85  QLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|4504243 histone cluster 1, H2al [Homo sapiens]
          Length = 130

 Score =  110 bits (275), Expect = 2e-25
 Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 85  QLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|10800144 histone cluster 1, H2aj [Homo sapiens]
          Length = 128

 Score =  110 bits (275), Expect = 2e-25
 Identities = 61/96 (63%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK
Sbjct: 85  QLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120


>gi|4504245 histone cluster 1, H2ac [Homo sapiens]
          Length = 130

 Score =  109 bits (272), Expect = 5e-25
 Identities = 60/96 (62%), Positives = 73/96 (76%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLAIR DEEL+ L+ + TIA GGV+P+I   L+ KK
Sbjct: 85  QLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120


>gi|25092737 histone cluster 1, H2aa [Homo sapiens]
          Length = 131

 Score =  108 bits (271), Expect = 7e-25
 Identities = 61/96 (63%), Positives = 72/96 (75%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGRIHR L+    +  R+GA A VY AA+LEYLTAE+LELAGNAS+D K  RI PRHL
Sbjct: 26  FPVGRIHRLLRKGNYAE-RIGAGAPVYLAAVLEYLTAEILELAGNASRDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLAIR DEEL+ L+   TIA GGV+P+I   L+ KK
Sbjct: 85  QLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120


>gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]
          Length = 371

 Score =  107 bits (268), Expect = 2e-24
 Identities = 56/101 (55%), Positives = 74/101 (73%), Gaps = 2/101 (1%)

Query: 1   MFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 60
           +FPVGR+ R++K     + R+G  A VY AA+LEYLTAE+LELAGNA++D K  R+TPRH
Sbjct: 22  IFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRH 80

Query: 61  LQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 100
           + LA+  DEEL+ L+K  TIA GGV+P+IH  L+ KK   K
Sbjct: 81  ILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121


>gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]
          Length = 371

 Score =  107 bits (268), Expect = 2e-24
 Identities = 56/101 (55%), Positives = 74/101 (73%), Gaps = 2/101 (1%)

Query: 1   MFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 60
           +FPVGR+ R++K     + R+G  A VY AA+LEYLTAE+LELAGNA++D K  R+TPRH
Sbjct: 22  IFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRH 80

Query: 61  LQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 100
           + LA+  DEEL+ L+K  TIA GGV+P+IH  L+ KK   K
Sbjct: 81  ILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121


>gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens]
          Length = 372

 Score =  107 bits (268), Expect = 2e-24
 Identities = 56/101 (55%), Positives = 74/101 (73%), Gaps = 2/101 (1%)

Query: 1   MFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 60
           +FPVGR+ R++K     + R+G  A VY AA+LEYLTAE+LELAGNA++D K  R+TPRH
Sbjct: 22  IFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRH 80

Query: 61  LQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 100
           + LA+  DEEL+ L+K  TIA GGV+P+IH  L+ KK   K
Sbjct: 81  ILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121


>gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens]
          Length = 369

 Score =  107 bits (268), Expect = 2e-24
 Identities = 56/101 (55%), Positives = 74/101 (73%), Gaps = 2/101 (1%)

Query: 1   MFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 60
           +FPVGR+ R++K     + R+G  A VY AA+LEYLTAE+LELAGNA++D K  R+TPRH
Sbjct: 22  IFPVGRMLRYIKKGHPKY-RIGVGAPVYMAAVLEYLTAEILELAGNAARDNKKGRVTPRH 80

Query: 61  LQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKKGQQK 100
           + LA+  DEEL+ L+K  TIA GGV+P+IH  L+ KK   K
Sbjct: 81  ILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121


>gi|28195394 histone cluster 2, H2ab [Homo sapiens]
          Length = 130

 Score =  107 bits (267), Expect = 2e-24
 Identities = 59/96 (61%), Positives = 72/96 (75%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLA+R DEEL+ L+   TIA GGV+P+I   L+ KK
Sbjct: 85  QLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120


>gi|4504253 H2A histone family, member X [Homo sapiens]
          Length = 143

 Score =  107 bits (266), Expect = 3e-24
 Identities = 60/96 (62%), Positives = 72/96 (75%), Gaps = 2/96 (2%)

Query: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61
           FPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 26  FPVGRVHRLLRKGHYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84

Query: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKK 96
           QLAIR DEEL+ L+   TIA GGV+P+I   L+ KK
Sbjct: 85  QLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120


>gi|8923920 H2A histone family, member Y2 [Homo sapiens]
          Length = 372

 Score =  104 bits (260), Expect = 1e-23
 Identities = 54/97 (55%), Positives = 70/97 (72%), Gaps = 2/97 (2%)

Query: 1   MFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRH 60
           +FPVGR+ R+LK  T  + R+   A VY AA++EYL AE+LELAGNA++D K  RI PRH
Sbjct: 22  IFPVGRLMRYLKKGTFKY-RISVGAPVYMAAVIEYLAAEILELAGNAARDNKKARIAPRH 80

Query: 61  LQLAIRGDEELDSLIK-ATIAGGGVIPHIHKSLIGKK 96
           + LA+  DEEL+ L+K  TIA GGV+P IH  L+ KK
Sbjct: 81  ILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKK 117


>gi|41406069 H2A histone family, member V isoform 4 [Homo sapiens]
          Length = 66

 Score = 80.5 bits (197), Expect = 3e-16
 Identities = 39/39 (100%), Positives = 39/39 (100%)

Query: 2  FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 40
          FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV
Sbjct: 28 FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.318    0.134    0.373 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,416,863
Number of Sequences: 37866
Number of extensions: 109779
Number of successful extensions: 381
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 39
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 294
Number of HSP's gapped (non-prelim): 44
length of query: 102
length of database: 18,247,518
effective HSP length: 73
effective length of query: 29
effective length of database: 15,483,300
effective search space: 449015700
effective search space used: 449015700
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.