Search of human proteins with 41349495

Search of human proteins with 41349495

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|41349495 DNA primase polypeptide 2 [Homo sapiens]
         (509 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|41349495 DNA primase polypeptide 2 [Homo sapiens]                 1030   0.0  
gi|189217904 RPGRIP1-like isoform b [Homo sapiens]                     37   0.043
gi|118442834 RPGRIP1-like isoform a [Homo sapiens]                     37   0.043
gi|226246554 hypothetical protein LOC643677 [Homo sapiens]             34   0.36 
gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sap...    34   0.36 
gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sap...    34   0.36 
gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sap...    34   0.36 
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof...    33   0.61 
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof...    33   0.61 
gi|9910280 UDP-glucose ceramide glucosyltransferase-like 1 [Homo...    31   3.0  
gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...    30   4.0  
gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin) ...    30   4.0  
gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-li...    30   4.0  
gi|221219020 NYD-SP11 protein [Homo sapiens]                           30   5.2  
gi|51479143 ATP synthase, H+ transporting, mitochondrial F0 comp...    30   5.2  
gi|51479141 ATP synthase, H+ transporting, mitochondrial F0 comp...    30   5.2  
gi|51479139 ATP synthase, H+ transporting, mitochondrial F0 comp...    30   5.2  
gi|51479137 ATP synthase, H+ transporting, mitochondrial F0 comp...    30   5.2  
gi|18644883 ATP synthase, H+ transporting, mitochondrial F0 comp...    30   5.2  
gi|154354979 myosin X [Homo sapiens]                                   30   5.2  
gi|223029510 echinoderm microtubule associated protein like 4 is...    30   5.2  
gi|19923497 echinoderm microtubule associated protein like 4 iso...    30   5.2  
gi|23510338 ubiquitin-activating enzyme E1 [Homo sapiens]              30   5.2  
gi|23510340 ubiquitin-activating enzyme E1 [Homo sapiens]              30   5.2  
gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin ...    30   5.2  
gi|140161500 ankyrin repeat and sterile alpha motif domain conta...    30   6.8  
gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s...    29   8.9  
gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s...    29   8.9  
gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo s...    29   8.9  

>gi|41349495 DNA primase polypeptide 2 [Homo sapiens]
          Length = 509

 Score = 1030 bits (2663), Expect = 0.0
 Identities = 509/509 (100%), Positives = 509/509 (100%)

Query: 1   MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLG 60
           MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLG
Sbjct: 1   MEFSGRKWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLG 60

Query: 61  VSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF 120
           VSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF
Sbjct: 61  VSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF 120

Query: 121 IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF 180
           IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF
Sbjct: 121 IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGF 180

Query: 181 ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV 240
           ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV
Sbjct: 181 ESIYKIPFADALDLFRGRKVYLEDGFAYVPLKDIVAIILNEFRAKLSKALALTARSLPAV 240

Query: 241 QSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKSFPPCMRQLHKALRENHH 300
           QSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKSFPPCMRQLHKALRENHH
Sbjct: 241 QSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKSFPPCMRQLHKALRENHH 300

Query: 301 LRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRT 360
           LRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRT
Sbjct: 301 LRHGGRMQYGLFLKGIGLTLEQALQFWKQEFIKGKMDPDKFDKGYSYNIRHSFGKEGKRT 360

Query: 361 DYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHY 420
           DYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHY
Sbjct: 361 DYTPFSCLKIILSNPPSQGDYHGCPFRHSDPELLKQKLQSYKISPGGISQILDLVKGTHY 420

Query: 421 QVACQKYFEMIHNVDDCGFSLNHPNQFFCESQRILNGGKDIKKEPIQPETPQPKPSVQKT 480
           QVACQKYFEMIHNVDDCGFSLNHPNQFFCESQRILNGGKDIKKEPIQPETPQPKPSVQKT
Sbjct: 421 QVACQKYFEMIHNVDDCGFSLNHPNQFFCESQRILNGGKDIKKEPIQPETPQPKPSVQKT 480

Query: 481 KDASSALASLNSSLEMDMEGLEDYFSEDS 509
           KDASSALASLNSSLEMDMEGLEDYFSEDS
Sbjct: 481 KDASSALASLNSSLEMDMEGLEDYFSEDS 509


>gi|189217904 RPGRIP1-like isoform b [Homo sapiens]
          Length = 1235

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 38  SLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRR 97
           S+ E +    + V+ L+   N+ +   K  + YQ ++E+  RK+     ENL+ +YE + 
Sbjct: 494 SMRELQATHAETVQELEKTRNMLIMQHKINKDYQMEVEAVTRKM-----ENLQQDYELKV 548

Query: 98  RDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDF 143
             ++    +R A     E +   I       +F+  I+P D + +F
Sbjct: 549 EQYVHLLDIRAARIHKLEAQLKDIAYGTKQYKFKPEIMPDDSVDEF 594


>gi|118442834 RPGRIP1-like isoform a [Homo sapiens]
          Length = 1315

 Score = 37.0 bits (84), Expect = 0.043
 Identities = 25/106 (23%), Positives = 49/106 (46%), Gaps = 5/106 (4%)

Query: 38  SLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRR 97
           S+ E +    + V+ L+   N+ +   K  + YQ ++E+  RK+     ENL+ +YE + 
Sbjct: 494 SMRELQATHAETVQELEKTRNMLIMQHKINKDYQMEVEAVTRKM-----ENLQQDYELKV 548

Query: 98  RDHISHFILRLAYCQSEELRRWFIQQEMDLLRFRFSILPKDKIQDF 143
             ++    +R A     E +   I       +F+  I+P D + +F
Sbjct: 549 EQYVHLLDIRAARIHKLEAQLKDIAYGTKQYKFKPEIMPDDSVDEF 594


>gi|226246554 hypothetical protein LOC643677 [Homo sapiens]
          Length = 7081

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 82   KFSYRENLEDEYEPRRRDHISHFILRLAY----CQSEELRRWFIQQEMDLLRFRFSILPK 137
            K   R N++ +   +   +  H +L+  Y    C S   +   ++ E D  + R  ILP+
Sbjct: 2825 KKELRGNIQQQKSFQLSKNAVHRVLKAVYDSGYCVSSIKKLTEVKMEKDKPKDRTCILPQ 2884

Query: 138  DKIQDFLKDSQLQFEAISDEEKTLREQE 165
             K++  LK+ Q      +D    LR+QE
Sbjct: 2885 PKLEKPLKEMQRSLSGCTDMSSILRKQE 2912


>gi|239756039 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
          Length = 6929

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 82   KFSYRENLEDEYEPRRRDHISHFILRLAY----CQSEELRRWFIQQEMDLLRFRFSILPK 137
            K   R N++ +   +   +  H +L+  Y    C S   +   ++ E D  + R  ILP+
Sbjct: 2754 KKELRGNIQQQKSFQLSKNAVHRVLKAVYDSGYCVSSIKKLTEVKMEKDKPKDRTCILPQ 2813

Query: 138  DKIQDFLKDSQLQFEAISDEEKTLREQE 165
             K++  LK+ Q      +D    LR+QE
Sbjct: 2814 PKLEKPLKEMQRSLSGCTDMSSILRKQE 2841


>gi|239750569 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
          Length = 6929

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 82   KFSYRENLEDEYEPRRRDHISHFILRLAY----CQSEELRRWFIQQEMDLLRFRFSILPK 137
            K   R N++ +   +   +  H +L+  Y    C S   +   ++ E D  + R  ILP+
Sbjct: 2754 KKELRGNIQQQKSFQLSKNAVHRVLKAVYDSGYCVSSIKKLTEVKMEKDKPKDRTCILPQ 2813

Query: 138  DKIQDFLKDSQLQFEAISDEEKTLREQE 165
             K++  LK+ Q      +D    LR+QE
Sbjct: 2814 PKLEKPLKEMQRSLSGCTDMSSILRKQE 2841


>gi|239744870 PREDICTED: hypothetical protein LOC643677 [Homo sapiens]
          Length = 6929

 Score = 33.9 bits (76), Expect = 0.36
 Identities = 23/88 (26%), Positives = 40/88 (45%), Gaps = 4/88 (4%)

Query: 82   KFSYRENLEDEYEPRRRDHISHFILRLAY----CQSEELRRWFIQQEMDLLRFRFSILPK 137
            K   R N++ +   +   +  H +L+  Y    C S   +   ++ E D  + R  ILP+
Sbjct: 2754 KKELRGNIQQQKSFQLSKNAVHRVLKAVYDSGYCVSSIKKLTEVKMEKDKPKDRTCILPQ 2813

Query: 138  DKIQDFLKDSQLQFEAISDEEKTLREQE 165
             K++  LK+ Q      +D    LR+QE
Sbjct: 2814 PKLEKPLKEMQRSLSGCTDMSSILRKQE 2841


>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
            [Homo sapiens]
          Length = 6907

 Score = 33.1 bits (74), Expect = 0.61
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 9/76 (11%)

Query: 133  SILPKDKIQDFLKDSQLQFEAISDEEKT-LREQEIVASSPSLSGLKLGFESIYKIPFADA 191
            ++ P D ++ F K  ++Q + +  +    L E +I   +P LS LK  +ES+        
Sbjct: 1770 ALSPSDSLEIFTKLEEIQQQILQQKHSMILLENQIGCLTPELSELKKQYESV-------- 1821

Query: 192  LDLFRGRKVYLEDGFA 207
             DLF  +K  L+D F+
Sbjct: 1822 SDLFNTKKSVLQDHFS 1837


>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
            [Homo sapiens]
          Length = 6885

 Score = 33.1 bits (74), Expect = 0.61
 Identities = 22/76 (28%), Positives = 38/76 (50%), Gaps = 9/76 (11%)

Query: 133  SILPKDKIQDFLKDSQLQFEAISDEEKT-LREQEIVASSPSLSGLKLGFESIYKIPFADA 191
            ++ P D ++ F K  ++Q + +  +    L E +I   +P LS LK  +ES+        
Sbjct: 1770 ALSPSDSLEIFTKLEEIQQQILQQKHSMILLENQIGCLTPELSELKKQYESV-------- 1821

Query: 192  LDLFRGRKVYLEDGFA 207
             DLF  +K  L+D F+
Sbjct: 1822 SDLFNTKKSVLQDHFS 1837


>gi|9910280 UDP-glucose ceramide glucosyltransferase-like 1 [Homo
            sapiens]
          Length = 1555

 Score = 30.8 bits (68), Expect = 3.0
 Identities = 20/56 (35%), Positives = 29/56 (51%), Gaps = 5/56 (8%)

Query: 178  LGFESIYKIPFADALDLFRGR-----KVYLEDGFAYVPLKDIVAIILNEFRAKLSK 228
            LG+  +   P A  L L +GR     ++Y  DG    P  D V I+LN F++K+ K
Sbjct: 1151 LGYFQLKANPGAWILRLRKGRSEDIYRIYSHDGTDSPPDADEVVIVLNNFKSKIIK 1206


>gi|154759259 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
           isoform 2 [Homo sapiens]
          Length = 2472

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 137 KDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESIYK 185
           K K+ D L+  QL F  + DEE  +RE+E +A+S +     +G +++ K
Sbjct: 777 KQKLADSLRLQQL-FRDVEDEETWIREKEPIAASTNRGKDLIGVQNLLK 824


>gi|194595509 spectrin, alpha, non-erythrocytic 1 (alpha-fodrin)
           isoform 1 [Homo sapiens]
          Length = 2477

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 17/49 (34%), Positives = 29/49 (59%), Gaps = 1/49 (2%)

Query: 137 KDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKLGFESIYK 185
           K K+ D L+  QL F  + DEE  +RE+E +A+S +     +G +++ K
Sbjct: 777 KQKLADSLRLQQL-FRDVEDEETWIREKEPIAASTNRGKDLIGVQNLLK 824


>gi|239745089 PREDICTED: golgi autoantigen, golgin subfamily a-like
           [Homo sapiens]
          Length = 828

 Score = 30.4 bits (67), Expect = 4.0
 Identities = 24/101 (23%), Positives = 47/101 (46%), Gaps = 1/101 (0%)

Query: 65  KGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWFIQQE 124
           K  ++Y  +L  E   L      N     E ++++      LRLA  +  E++    + +
Sbjct: 155 KKADRYIEELTKERDALSLELYRNTITNEELKKKNAELQEKLRLAESEKSEIQLNVKELK 214

Query: 125 MDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQE 165
             L R +F +LP+ +     ++   Q E + ++EK +R+QE
Sbjct: 215 RKLERAKF-LLPQVQTNTLQEEMWRQEEELREQEKKIRKQE 254


>gi|221219020 NYD-SP11 protein [Homo sapiens]
          Length = 2873

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 36/167 (21%), Positives = 78/167 (46%), Gaps = 16/167 (9%)

Query: 3    FSGRKWRKLRLA--GDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLG 60
            F  R+WRK + A  GD+    +   +    +  SE     E E+L  +    L+  E+L 
Sbjct: 2192 FLKRRWRKRKEAKRGDKPKEKFSSQVD---EVESEEHFSEEMESLLDE----LEKQESLS 2244

Query: 61   VSYVKGTEQYQSKLESELRKLKFSYRENLEDEYEPRRRDHISHFILRLAYCQSEELRRWF 120
                +  E+ + + E E+R+ +   +E  E E +   ++            + +E ++  
Sbjct: 2245 SEEEEEREEEEEREEEEVREEEEERKEEEEGEEKQVEKEEEEK------KKKKKEKKKEE 2298

Query: 121  IQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIV 167
            +Q++ ++   +  I+ +++ +  L D + + E+ S EE+  RE+EI+
Sbjct: 2299 VQEKEEVFEEKEEIMSEEETES-LSDEEEEEESCSLEEEVDREKEIL 2344


>gi|51479143 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F6 isoform a precursor [Homo sapiens]
          Length = 108

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 36 NISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLK 82
          N  L   + L +D+++  KS        V  + +YQ +LE EL KLK
Sbjct: 33 NKELDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLK 79


>gi|51479141 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F6 isoform b precursor [Homo sapiens]
          Length = 116

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 36 NISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLK 82
          N  L   + L +D+++  KS        V  + +YQ +LE EL KLK
Sbjct: 41 NKELDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLK 87


>gi|51479139 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F6 isoform a precursor [Homo sapiens]
          Length = 108

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 36 NISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLK 82
          N  L   + L +D+++  KS        V  + +YQ +LE EL KLK
Sbjct: 33 NKELDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLK 79


>gi|51479137 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F6 isoform a precursor [Homo sapiens]
          Length = 108

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 36 NISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLK 82
          N  L   + L +D+++  KS        V  + +YQ +LE EL KLK
Sbjct: 33 NKELDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLK 79


>gi|18644883 ATP synthase, H+ transporting, mitochondrial F0
          complex, subunit F6 isoform a precursor [Homo sapiens]
          Length = 108

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 16/47 (34%), Positives = 24/47 (51%)

Query: 36 NISLIEFENLAIDRVKLLKSVENLGVSYVKGTEQYQSKLESELRKLK 82
          N  L   + L +D+++  KS        V  + +YQ +LE EL KLK
Sbjct: 33 NKELDPIQKLFVDKIREYKSKRQTSGGPVDASSEYQQELERELFKLK 79


>gi|154354979 myosin X [Homo sapiens]
          Length = 2058

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 37/115 (32%), Positives = 52/115 (45%), Gaps = 21/115 (18%)

Query: 72  SKLESELRKLKFSYRENLEDEYEPRRRDHISH--FILR---LAYCQSEELRR-----WFI 121
           S  E +L K K   RE+LE + E RR + +SH   ++R   L +   ++ R+       I
Sbjct: 713 SNSEWQLGKTKVFLRESLEQKLEKRREEEVSHAAMVIRAHVLGFLARKQYRKVLYCVVII 772

Query: 122 QQEMD--LLRFRFSILPKDKI--QDFLKDS-------QLQFEAISDEEKTLREQE 165
           Q+     LLR RF  L K  I  Q  L+         QL  E    EEK  +E+E
Sbjct: 773 QKNYRAFLLRRRFLHLKKAAIVFQKQLRGQIARRVYRQLLAEKREQEEKKKQEEE 827


>gi|223029510 echinoderm microtubule associated protein like 4
           isoform b [Homo sapiens]
          Length = 923

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 466 IQPETPQPKPS--VQKTKDASSALAS----LNSSLEMDMEGLEDYFSEDS 509
           IQ  TP P PS  + +T +  S ++S    L +SLE  +E  ED+  E+S
Sbjct: 835 IQSNTPTPPPSQPLNETAEEESRISSSPTLLENSLEQTVEPSEDHSEEES 884


>gi|19923497 echinoderm microtubule associated protein like 4
           isoform a [Homo sapiens]
          Length = 981

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 19/50 (38%), Positives = 28/50 (56%), Gaps = 6/50 (12%)

Query: 466 IQPETPQPKPS--VQKTKDASSALAS----LNSSLEMDMEGLEDYFSEDS 509
           IQ  TP P PS  + +T +  S ++S    L +SLE  +E  ED+  E+S
Sbjct: 893 IQSNTPTPPPSQPLNETAEEESRISSSPTLLENSLEQTVEPSEDHSEEES 942


>gi|23510338 ubiquitin-activating enzyme E1 [Homo sapiens]
          Length = 1058

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 17/64 (26%), Positives = 32/64 (50%)

Query: 229 ALALTARSLPAVQSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKSFPPCM 288
           A A+ AR+LPAVQ +   + L+  L++   G        +G ++  ++    +  F P M
Sbjct: 362 AQAVNARALPAVQQNNLDEDLIRKLAYVAAGDLAPINAFIGGLAAQEVMKACSGKFMPIM 421

Query: 289 RQLH 292
           + L+
Sbjct: 422 QWLY 425


>gi|23510340 ubiquitin-activating enzyme E1 [Homo sapiens]
          Length = 1058

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 17/64 (26%), Positives = 32/64 (50%)

Query: 229 ALALTARSLPAVQSDERLQPLLNHLSHSYTGQDYSTQGNVGKISLDQIDLLSTKSFPPCM 288
           A A+ AR+LPAVQ +   + L+  L++   G        +G ++  ++    +  F P M
Sbjct: 362 AQAVNARALPAVQQNNLDEDLIRKLAYVAAGDLAPINAFIGGLAAQEVMKACSGKFMPIM 421

Query: 289 RQLH 292
           + L+
Sbjct: 422 QWLY 425


>gi|148596984 golgi autoantigen, golgin subfamily b, macrogolgin (with
            transmembrane signal), 1 [Homo sapiens]
          Length = 3259

 Score = 30.0 bits (66), Expect = 5.2
 Identities = 43/185 (23%), Positives = 82/185 (44%), Gaps = 23/185 (12%)

Query: 7    KWRKLRLAGDQRNASYPHCLQFYLQPPSENISLIEFENLAIDRVKLLKSVENLGVSYVKG 66
            K+RK    G QR+A+ P      +Q   + +S     +L  DR +LLK ++NL   Y++ 
Sbjct: 2854 KFRKSE-EGKQRSAAQPSTSPAEVQSLKKAMS-----SLQNDRDRLLKELKNLQQQYLQI 2907

Query: 67   TEQYQSKLESELRKLKFSYRENLEDE------YEPRRRDHIS--HFILRLAYCQSEELRR 118
             ++      +EL  LK   +E  +         E  R++++S  H + +L      E   
Sbjct: 2908 NQEI-----TELHPLKAQLQEYQDKTKAFQIMQEELRQENLSWQHELHQLRM----EKSS 2958

Query: 119  WFIQQEMDLLRFRFSILPKDKIQDFLKDSQLQFEAISDEEKTLREQEIVASSPSLSGLKL 178
            W I +     ++  +I  KD+    L++   +  + S + + L+ Q    +SP  S    
Sbjct: 2959 WEIHERRMKEQYLMAISDKDQQLSHLQNLIRELRSSSSQTQPLKVQYQRQASPETSASPD 3018

Query: 179  GFESI 183
            G +++
Sbjct: 3019 GSQNL 3023


>gi|140161500 ankyrin repeat and sterile alpha motif domain
           containing 1 [Homo sapiens]
          Length = 1134

 Score = 29.6 bits (65), Expect = 6.8
 Identities = 22/81 (27%), Positives = 36/81 (44%), Gaps = 9/81 (11%)

Query: 187 PFADALDLFRGRKVYLEDGFAYVPL--------KDIVAIIL-NEFRAKLSKALALTARSL 237
           P +  L ++RG  V   D   Y PL        KD+V ++L N+    ++ +       L
Sbjct: 60  PLSSLLSMWRGPNVNCVDSTGYTPLHHAALNGHKDVVEVLLRNDALTNVADSKGCYPLHL 119

Query: 238 PAVQSDERLQPLLNHLSHSYT 258
            A + D ++  LL H   S+T
Sbjct: 120 AAWKGDAQIVRLLIHQGPSHT 140


>gi|239756957 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
            sapiens]
          Length = 4470

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 12/117 (10%)

Query: 72   SKLESELRKLKFSYRENLEDEYEP-RRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRF 130
            ++L   L K + +Y+ +LED  +    R+ +S  ++  A  ++EE +  F          
Sbjct: 948  ARLIPRLAKDRMNYKMDLEDNTDLIEMREEVSSLVIN-AMKEAEEYQDSFE--------- 997

Query: 131  RFSILPKDKIQDFLKDSQLQFEAISDEE-KTLREQEIVASSPSLSGLKLGFESIYKI 186
            R+S L  D +Q+F+K+  +   A++ E+  T  +  I  + P+L+  +   +S  K+
Sbjct: 998  RYSYLWTDNLQEFMKNFLIYGCAVTAEDLDTWTDDTIPKTPPTLAQFQEQIDSYEKL 1054


>gi|239751459 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
            sapiens]
          Length = 4485

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 12/117 (10%)

Query: 72   SKLESELRKLKFSYRENLEDEYEP-RRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRF 130
            ++L   L K + +Y+ +LED  +    R+ +S  ++  A  ++EE +  F          
Sbjct: 939  ARLIPRLAKDRMNYKMDLEDNTDLIEMREEVSSLVIN-AMKEAEEYQDSFE--------- 988

Query: 131  RFSILPKDKIQDFLKDSQLQFEAISDEE-KTLREQEIVASSPSLSGLKLGFESIYKI 186
            R+S L  D +Q+F+K+  +   A++ E+  T  +  I  + P+L+  +   +S  K+
Sbjct: 989  RYSYLWTDNLQEFMKNFLIYGCAVTAEDLDTWTDDTIPKTPPTLAQFQEQIDSYEKL 1045


>gi|239745966 PREDICTED: dynein, axonemal, heavy chain 17 [Homo
            sapiens]
          Length = 4485

 Score = 29.3 bits (64), Expect = 8.9
 Identities = 28/117 (23%), Positives = 58/117 (49%), Gaps = 12/117 (10%)

Query: 72   SKLESELRKLKFSYRENLEDEYEP-RRRDHISHFILRLAYCQSEELRRWFIQQEMDLLRF 130
            ++L   L K + +Y+ +LED  +    R+ +S  ++  A  ++EE +  F          
Sbjct: 939  ARLIPRLAKDRMNYKMDLEDNTDLIEMREEVSSLVIN-AMKEAEEYQDSFE--------- 988

Query: 131  RFSILPKDKIQDFLKDSQLQFEAISDEE-KTLREQEIVASSPSLSGLKLGFESIYKI 186
            R+S L  D +Q+F+K+  +   A++ E+  T  +  I  + P+L+  +   +S  K+
Sbjct: 989  RYSYLWTDNLQEFMKNFLIYGCAVTAEDLDTWTDDTIPKTPPTLAQFQEQIDSYEKL 1045


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.319    0.137    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 20,027,928
Number of Sequences: 37866
Number of extensions: 917715
Number of successful extensions: 3064
Number of sequences better than 10.0: 29
Number of HSP's better than 10.0 without gapping: 13
Number of HSP's successfully gapped in prelim test: 16
Number of HSP's that attempted gapping in prelim test: 3030
Number of HSP's gapped (non-prelim): 55
length of query: 509
length of database: 18,247,518
effective HSP length: 107
effective length of query: 402
effective length of database: 14,195,856
effective search space: 5706734112
effective search space used: 5706734112
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 64 (29.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.