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Search of human proteins with 40317624
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|40317624 mitochondrial ribosome recycling factor isoform 2
[Homo sapiens]
(201 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|40317624 mitochondrial ribosome recycling factor isoform 2 [H... 401 e-112
gi|20270317 mitochondrial ribosome recycling factor isoform 1 [H... 359 e-99
gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo sap... 33 0.21
gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo sap... 33 0.21
gi|150010604 kinesin family member 4B [Homo sapiens] 30 1.4
gi|40068061 centromere protein Q [Homo sapiens] 29 2.4
gi|62198237 DNA-directed DNA polymerase epsilon [Homo sapiens] 28 6.9
gi|33188443 microfilament and actin filament cross-linker protei... 27 9.0
gi|33188445 microfilament and actin filament cross-linker protei... 27 9.0
gi|197276670 spermatogenesis and centriole associated 1 isoform ... 27 9.0
gi|197276668 spermatogenesis and centriole associated 1 isoform ... 27 9.0
gi|58219064 Src homology 2 domain containing E [Homo sapiens] 27 9.0
>gi|40317624 mitochondrial ribosome recycling factor isoform 2 [Homo
sapiens]
Length = 201
Score = 401 bits (1031), Expect = e-112
Identities = 201/201 (100%), Positives = 201/201 (100%)
Query: 1 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA 60
MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
Sbjct: 1 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA 60
Query: 61 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA 120
KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
Sbjct: 61 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA 120
Query: 121 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV 180
VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
Sbjct: 121 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV 180
Query: 181 PIPQSAKWPMTQWQNWTGIWQ 201
PIPQSAKWPMTQWQNWTGIWQ
Sbjct: 181 PIPQSAKWPMTQWQNWTGIWQ 201
>gi|20270317 mitochondrial ribosome recycling factor isoform 1 [Homo
sapiens]
Length = 262
Score = 359 bits (921), Expect = e-99
Identities = 184/184 (100%), Positives = 184/184 (100%)
Query: 1 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA 60
MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA
Sbjct: 1 MALGLKCFRMVHPTFRNYLAASIRPVSEVTLKTVHERQHGHRQYMAYSAVPVRHFATKKA 60
Query: 61 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA 120
KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA
Sbjct: 61 KAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIA 120
Query: 121 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV 180
VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV
Sbjct: 121 VVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVEGTLIRV 180
Query: 181 PIPQ 184
PIPQ
Sbjct: 181 PIPQ 184
>gi|30795117 F-box only protein, helicase, 18 isoform 1 [Homo
sapiens]
Length = 1094
Score = 32.7 bits (73), Expect = 0.21
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 29/180 (16%)
Query: 9 RMVHPTFRNYLAASIRPV--SEVTLKTVHERQHGH--RQYMAYSAV---PVRHFATKKAK 61
R ++ TF +A V S V KT H +GH R+Y + + + F
Sbjct: 535 RFLYVTFNKSIAKQAERVFPSNVICKTFHSMAYGHIGRKYQSKKKLNLFKLTPFMVNSVL 594
Query: 62 AKGKGQ-------SQTRVNINAALVEDIINLEEV-----NEEMKSVIEALKDNFNKTL-- 107
A+GKG +T N A+ E++ ++ V N + + V+ + N L
Sbjct: 595 AEGKGGFIRAKLVCKTLENFFASADEEL-TIDHVPIWCKNSQGQRVMVEQSEKLNGVLEA 653
Query: 108 -----NIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAI 162
N+R ++ +T DG L L Q+S+ S+ S I V+ A +CT A + +
Sbjct: 654 SRLWDNMRKLGECTEEAHQMTHDGYLKLWQLSKPSLASFDAIFVDEAQ--DCTPAIMNIV 711
>gi|30795119 F-box only protein, helicase, 18 isoform 2 [Homo
sapiens]
Length = 1043
Score = 32.7 bits (73), Expect = 0.21
Identities = 45/180 (25%), Positives = 75/180 (41%), Gaps = 29/180 (16%)
Query: 9 RMVHPTFRNYLAASIRPV--SEVTLKTVHERQHGH--RQYMAYSAV---PVRHFATKKAK 61
R ++ TF +A V S V KT H +GH R+Y + + + F
Sbjct: 484 RFLYVTFNKSIAKQAERVFPSNVICKTFHSMAYGHIGRKYQSKKKLNLFKLTPFMVNSVL 543
Query: 62 AKGKGQ-------SQTRVNINAALVEDIINLEEV-----NEEMKSVIEALKDNFNKTL-- 107
A+GKG +T N A+ E++ ++ V N + + V+ + N L
Sbjct: 544 AEGKGGFIRAKLVCKTLENFFASADEEL-TIDHVPIWCKNSQGQRVMVEQSEKLNGVLEA 602
Query: 108 -----NIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAI 162
N+R ++ +T DG L L Q+S+ S+ S I V+ A +CT A + +
Sbjct: 603 SRLWDNMRKLGECTEEAHQMTHDGYLKLWQLSKPSLASFDAIFVDEAQ--DCTPAIMNIV 660
>gi|150010604 kinesin family member 4B [Homo sapiens]
Length = 1234
Score = 30.0 bits (66), Expect = 1.4
Identities = 33/117 (28%), Positives = 51/117 (43%), Gaps = 16/117 (13%)
Query: 58 KKAKAKGKGQSQTRVNINAALVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLD 117
K ++ K QT A ++E II E+VNE++ + +E L+ + L+ L
Sbjct: 401 KLSRCLSKAAGQT-----AQMLERIILTEQVNEKLNAKLEELRQHVACKLD-------LQ 448
Query: 118 KIAVVTADGKLALNQISQISMKSPQLILVNMASFPECTAAAIKAI--RESGMNLNPE 172
K+ D +L N +I QLI CTAAAI E+ + +PE
Sbjct: 449 KLVETLEDQELKEN--VEIICNLQQLITQLSDETVACTAAAIDTAVEEEAQVETSPE 503
>gi|40068061 centromere protein Q [Homo sapiens]
Length = 268
Score = 29.3 bits (64), Expect = 2.4
Identities = 21/82 (25%), Positives = 40/82 (48%), Gaps = 1/82 (1%)
Query: 76 AALVEDIINLEEVNEEMKSVIEALKDNFNKTLN-IRTSPGSLDKIAVVTADGKLALNQIS 134
A L E+I + E E M I++LK+ + + + ++ + + G L+L ++S
Sbjct: 156 ALLQEEIDKMVETTELMTGNIQSLKNKIQILASEVEEEEERVKQMHQINSSGVLSLPELS 215
Query: 135 QISMKSPQLILVNMASFPECTA 156
Q ++K+P L +A P A
Sbjct: 216 QKTLKAPTLQKEILALIPNQNA 237
>gi|62198237 DNA-directed DNA polymerase epsilon [Homo sapiens]
Length = 2286
Score = 27.7 bits (60), Expect = 6.9
Identities = 12/23 (52%), Positives = 17/23 (73%)
Query: 79 VEDIINLEEVNEEMKSVIEALKD 101
VE + N EEV +E+KS + +LKD
Sbjct: 590 VEQVTNFEEVCDEIKSKLASLKD 612
>gi|33188443 microfilament and actin filament cross-linker protein
isoform b [Homo sapiens]
Length = 5938
Score = 27.3 bits (59), Expect = 9.0
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 112 SPGSLDKIAVVTADGKLALNQISQISMKSPQL-------ILVNMASFPECTAAAIKAIRE 164
S SL+K A+ T DG + +NQ + K ++ +L +F T +A + +
Sbjct: 2215 SGASLEKGALDTTDGYMGVNQAPEKLDKQCEMMKARHQELLSQQQNFILATQSAQAFLDQ 2274
Query: 165 SGMNLNPEVEGTL 177
G NL PE + L
Sbjct: 2275 HGHNLTPEEQQML 2287
>gi|33188445 microfilament and actin filament cross-linker protein
isoform a [Homo sapiens]
Length = 5430
Score = 27.3 bits (59), Expect = 9.0
Identities = 21/73 (28%), Positives = 34/73 (46%), Gaps = 7/73 (9%)
Query: 112 SPGSLDKIAVVTADGKLALNQISQISMKSPQL-------ILVNMASFPECTAAAIKAIRE 164
S SL+K A+ T DG + +NQ + K ++ +L +F T +A + +
Sbjct: 1713 SGASLEKGALDTTDGYMGVNQAPEKLDKQCEMMKARHQELLSQQQNFILATQSAQAFLDQ 1772
Query: 165 SGMNLNPEVEGTL 177
G NL PE + L
Sbjct: 1773 HGHNLTPEEQQML 1785
>gi|197276670 spermatogenesis and centriole associated 1 isoform 2
[Homo sapiens]
Length = 441
Score = 27.3 bits (59), Expect = 9.0
Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 78 LVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQIS 137
L I L NEE+K ++ +++N I+T G L + G+ S+ +
Sbjct: 10 LRHQIERLVRENEELKKLVRLIRENHELKSAIKTQAGGLGISGFTSGLGEATAGLSSRQN 69
Query: 138 ---MKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVE------------GTLIRVPI 182
P + N E A+ + E +L P TL+ P
Sbjct: 70 NGVFLPPSPAVANERVLEEVGIMALAPLAEMLTSLQPSATPGSLMSPLTGTLSTLLSGPA 129
Query: 183 PQSAKWPMTQW 193
P S P+T +
Sbjct: 130 PTSQSSPLTSF 140
>gi|197276668 spermatogenesis and centriole associated 1 isoform 1
[Homo sapiens]
Length = 591
Score = 27.3 bits (59), Expect = 9.0
Identities = 28/131 (21%), Positives = 46/131 (35%), Gaps = 15/131 (11%)
Query: 78 LVEDIINLEEVNEEMKSVIEALKDNFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQIS 137
L I L NEE+K ++ +++N I+T G L + G+ S+ +
Sbjct: 10 LRHQIERLVRENEELKKLVRLIRENHELKSAIKTQAGGLGISGFTSGLGEATAGLSSRQN 69
Query: 138 ---MKSPQLILVNMASFPECTAAAIKAIRESGMNLNPEVE------------GTLIRVPI 182
P + N E A+ + E +L P TL+ P
Sbjct: 70 NGVFLPPSPAVANERVLEEVGIMALAPLAEMLTSLQPSATPGSLMSPLTGTLSTLLSGPA 129
Query: 183 PQSAKWPMTQW 193
P S P+T +
Sbjct: 130 PTSQSSPLTSF 140
>gi|58219064 Src homology 2 domain containing E [Homo sapiens]
Length = 495
Score = 27.3 bits (59), Expect = 9.0
Identities = 13/43 (30%), Positives = 22/43 (51%)
Query: 102 NFNKTLNIRTSPGSLDKIAVVTADGKLALNQISQISMKSPQLI 144
N ++ ++TS G + I T D K LNQ S + P+++
Sbjct: 426 NSRYSIALKTSQGCVHIIVAQTKDNKYTLNQTSAVFDSIPEVV 468
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.129 0.376
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,884,654
Number of Sequences: 37866
Number of extensions: 248763
Number of successful extensions: 894
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 884
Number of HSP's gapped (non-prelim): 19
length of query: 201
length of database: 18,247,518
effective HSP length: 97
effective length of query: 104
effective length of database: 14,574,516
effective search space: 1515749664
effective search space used: 1515749664
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.