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Search of human proteins with 12408663
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|12408663 T-lymphocyte maturation-associated protein isoform
c [Homo sapiens]
(97 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|12408663 T-lymphocyte maturation-associated protein isoform c... 195 7e-51
gi|4505091 T-lymphocyte maturation-associated protein isoform a ... 160 2e-40
gi|12408661 T-lymphocyte maturation-associated protein isoform b... 96 8e-21
gi|12408665 T-lymphocyte maturation-associated protein isoform d... 91 2e-19
gi|239741714 PREDICTED: hypothetical protein XP_002342305 [Homo ... 53 5e-08
gi|13162283 mal, T-cell differentiation protein-like [Homo sapiens] 53 5e-08
gi|169164947 PREDICTED: similar to mal, T-cell differentiation p... 46 6e-06
gi|169164253 PREDICTED: similar to mal, T-cell differentiation p... 46 6e-06
gi|169163277 PREDICTED: similar to mal, T-cell differentiation p... 46 6e-06
gi|16418397 MAL2 proteolipid protein [Homo sapiens] 43 5e-05
gi|31657096 chemokine-like factor superfamily 4 isoform 2 [Homo ... 32 0.14
gi|30520333 chemokine-like factor superfamily 4 isoform 1 [Homo ... 32 0.14
gi|66932929 myeloid-associated differentiation marker [Homo sapi... 29 0.71
gi|66932927 myeloid-associated differentiation marker [Homo sapi... 29 0.71
gi|66932925 myeloid-associated differentiation marker [Homo sapi... 29 0.71
gi|66932923 myeloid-associated differentiation marker [Homo sapi... 29 0.71
gi|19923903 myeloid-associated differentiation marker [Homo sapi... 29 0.71
gi|4885121 chemokine (C-C motif) receptor 8 [Homo sapiens] 29 0.71
gi|154759277 monocyte to macrophage differentiation-associated 2... 29 0.92
gi|154759275 monocyte to macrophage differentiation-associated 2... 29 0.92
gi|73486649 membrane-spanning 4-domains, subfamily A, member 3 i... 27 4.6
gi|223278370 myeloid-associated differentiation marker-like 2 [H... 26 6.0
gi|13786129 RAB33B, member RAS oncogene family [Homo sapiens] 26 7.8
>gi|12408663 T-lymphocyte maturation-associated protein isoform c
[Homo sapiens]
Length = 97
Score = 195 bits (495), Expect = 7e-51
Identities = 97/97 (100%), Positives = 97/97 (100%)
Query: 1 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFDAAYHCTAALFYLSASVLEALATITMQDG 60
MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFDAAYHCTAALFYLSASVLEALATITMQDG
Sbjct: 1 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFDAAYHCTAALFYLSASVLEALATITMQDG 60
Query: 61 FTYRHYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS 97
FTYRHYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS
Sbjct: 61 FTYRHYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS 97
>gi|4505091 T-lymphocyte maturation-associated protein isoform a
[Homo sapiens]
Length = 153
Score = 160 bits (405), Expect = 2e-40
Identities = 95/153 (62%), Positives = 95/153 (62%), Gaps = 56/153 (36%)
Query: 1 MAPAAATGGSTLPSGFSVFTTLPDLL----FIF--------------------------- 29
MAPAAATGGSTLPSGFSVFTTLPDLL FIF
Sbjct: 1 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFIFGGLVWILVASSLVPWPLVQGWVMFVSV 60
Query: 30 -------------------------EFDAAYHCTAALFYLSASVLEALATITMQDGFTYR 64
DAAYHCTAALFYLSASVLEALATITMQDGFTYR
Sbjct: 61 FCFVATTTLIILYIIGAHGGETSWVTLDAAYHCTAALFYLSASVLEALATITMQDGFTYR 120
Query: 65 HYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS 97
HYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS
Sbjct: 121 HYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS 153
>gi|12408661 T-lymphocyte maturation-associated protein isoform b
[Homo sapiens]
Length = 111
Score = 95.5 bits (236), Expect = 8e-21
Identities = 59/111 (53%), Positives = 68/111 (61%), Gaps = 14/111 (12%)
Query: 1 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEF---DAAYHCTAA-----------LFYLSA 46
MAPAAATGGSTLPSGFSVFTTLPDLLFIFEF + A+ + ++S
Sbjct: 1 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFIFGGLVWILVASSLVPWPLVQGWVMFVSV 60
Query: 47 SVLEALATITMQDGFTYRHYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS 97
A T+ + + +VFSYIATLLYVVHAVFSLIRWKSS
Sbjct: 61 FCFVATTTLIILYIIGAHGGETSWVTLVFSYIATLLYVVHAVFSLIRWKSS 111
>gi|12408665 T-lymphocyte maturation-associated protein isoform d
[Homo sapiens]
Length = 55
Score = 90.9 bits (224), Expect = 2e-19
Identities = 55/97 (56%), Positives = 55/97 (56%), Gaps = 42/97 (43%)
Query: 1 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEFDAAYHCTAALFYLSASVLEALATITMQDG 60
MAPAAATGGSTLPSGFSVFTTLPDLLFIFEF
Sbjct: 1 MAPAAATGGSTLPSGFSVFTTLPDLLFIFEF----------------------------- 31
Query: 61 FTYRHYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS 97
VFSYIATLLYVVHAVFSLIRWKSS
Sbjct: 32 -------------VFSYIATLLYVVHAVFSLIRWKSS 55
>gi|239741714 PREDICTED: hypothetical protein XP_002342305 [Homo
sapiens]
Length = 231
Score = 53.1 bits (126), Expect = 5e-08
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 32 DAAYHCTAALFYLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIATLLYVVHA 87
D+ YH T + Y+SA+VL+ ATI + R Y+ N AA F++IATLLY++HA
Sbjct: 170 DSLYHGTTGILYMSAAVLQVHATIVSEKLLDPRIYYINSAASFFAFIATLLYILHA 225
>gi|13162283 mal, T-cell differentiation protein-like [Homo sapiens]
Length = 153
Score = 53.1 bits (126), Expect = 5e-08
Identities = 26/56 (46%), Positives = 37/56 (66%)
Query: 32 DAAYHCTAALFYLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIATLLYVVHA 87
D+ YH T + Y+SA+VL+ ATI + R Y+ N AA F++IATLLY++HA
Sbjct: 92 DSLYHGTTGILYMSAAVLQVHATIVSEKLLDPRIYYINSAASFFAFIATLLYILHA 147
>gi|169164947 PREDICTED: similar to mal, T-cell differentiation
protein-like [Homo sapiens]
Length = 130
Score = 46.2 bits (108), Expect = 6e-06
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 26 LFIFE----FDAAYHCTAALFYLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIATL 81
LF FE D+ YH T + Y+SA+VL+ I M + R+Y N AA+ F+++ L
Sbjct: 60 LFGFESWRVLDSLYHGTTGILYMSAAVLQVHVMI-MSEAQDLRNYCINTAALFFAFVTML 118
Query: 82 LYVVHA 87
LY++HA
Sbjct: 119 LYILHA 124
>gi|169164253 PREDICTED: similar to mal, T-cell differentiation
protein-like [Homo sapiens]
Length = 130
Score = 46.2 bits (108), Expect = 6e-06
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 26 LFIFE----FDAAYHCTAALFYLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIATL 81
LF FE D+ YH T + Y+SA+VL+ I M + R+Y N AA+ F+++ L
Sbjct: 60 LFGFESWRVLDSLYHGTTGILYMSAAVLQVHVMI-MSEAQDLRNYCINTAALFFAFVTML 118
Query: 82 LYVVHA 87
LY++HA
Sbjct: 119 LYILHA 124
>gi|169163277 PREDICTED: similar to mal, T-cell differentiation
protein-like [Homo sapiens]
Length = 130
Score = 46.2 bits (108), Expect = 6e-06
Identities = 26/66 (39%), Positives = 39/66 (59%), Gaps = 5/66 (7%)
Query: 26 LFIFE----FDAAYHCTAALFYLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIATL 81
LF FE D+ YH T + Y+SA+VL+ I M + R+Y N AA+ F+++ L
Sbjct: 60 LFGFESWRVLDSLYHGTTGILYMSAAVLQVHVMI-MSEAQDLRNYCINTAALFFAFVTML 118
Query: 82 LYVVHA 87
LY++HA
Sbjct: 119 LYILHA 124
>gi|16418397 MAL2 proteolipid protein [Homo sapiens]
Length = 176
Score = 43.1 bits (100), Expect = 5e-05
Identities = 26/74 (35%), Positives = 37/74 (50%), Gaps = 10/74 (13%)
Query: 32 DAAYHCTAALFYLSASVLEALAT----------ITMQDGFTYRHYHENIAAVVFSYIATL 81
D AYH T +FY A +LEA AT IT Q + Y+ N+AA +F+++ T
Sbjct: 102 DFAYHFTVFVFYFGAFLLEAAATSLHDLHCNTTITGQPLLSDNQYNINVAASIFAFMTTA 161
Query: 82 LYVVHAVFSLIRWK 95
Y +L RW+
Sbjct: 162 CYGCSLGLALRRWR 175
>gi|31657096 chemokine-like factor superfamily 4 isoform 2 [Homo
sapiens]
Length = 208
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 10/60 (16%)
Query: 38 TAALFYLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS 97
+A LF++++ VL AL +R E IAAV+F ++AT Y V+ ++ +W+ S
Sbjct: 129 SAFLFFIASIVLAAL---------NHRAGAE-IAAVIFGFLATAAYAVNTFLAVQKWRVS 178
>gi|30520333 chemokine-like factor superfamily 4 isoform 1 [Homo
sapiens]
Length = 234
Score = 31.6 bits (70), Expect = 0.14
Identities = 20/60 (33%), Positives = 34/60 (56%), Gaps = 10/60 (16%)
Query: 38 TAALFYLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIATLLYVVHAVFSLIRWKSS 97
+A LF++++ VL AL +R E IAAV+F ++AT Y V+ ++ +W+ S
Sbjct: 129 SAFLFFIASIVLAAL---------NHRAGAE-IAAVIFGFLATAAYAVNTFLAVQKWRVS 178
>gi|66932929 myeloid-associated differentiation marker [Homo
sapiens]
Length = 322
Score = 29.3 bits (64), Expect = 0.71
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 31 FDAAYHCTAALFYLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIATLLYVVHAVFS 90
F + C AALF LSAS++ T +Q R IAA FS IA + Y ++
Sbjct: 101 FPITFACYAALFCLSASII--YPTTYVQFLSHGRSRDHAIAATFFSCIACVAYATEVAWT 158
Query: 91 LIR 93
R
Sbjct: 159 RAR 161
>gi|66932927 myeloid-associated differentiation marker [Homo
sapiens]
Length = 322
Score = 29.3 bits (64), Expect = 0.71
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 31 FDAAYHCTAALFYLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIATLLYVVHAVFS 90
F + C AALF LSAS++ T +Q R IAA FS IA + Y ++
Sbjct: 101 FPITFACYAALFCLSASII--YPTTYVQFLSHGRSRDHAIAATFFSCIACVAYATEVAWT 158
Query: 91 LIR 93
R
Sbjct: 159 RAR 161
>gi|66932925 myeloid-associated differentiation marker [Homo
sapiens]
Length = 322
Score = 29.3 bits (64), Expect = 0.71
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 31 FDAAYHCTAALFYLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIATLLYVVHAVFS 90
F + C AALF LSAS++ T +Q R IAA FS IA + Y ++
Sbjct: 101 FPITFACYAALFCLSASII--YPTTYVQFLSHGRSRDHAIAATFFSCIACVAYATEVAWT 158
Query: 91 LIR 93
R
Sbjct: 159 RAR 161
>gi|66932923 myeloid-associated differentiation marker [Homo
sapiens]
Length = 322
Score = 29.3 bits (64), Expect = 0.71
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 31 FDAAYHCTAALFYLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIATLLYVVHAVFS 90
F + C AALF LSAS++ T +Q R IAA FS IA + Y ++
Sbjct: 101 FPITFACYAALFCLSASII--YPTTYVQFLSHGRSRDHAIAATFFSCIACVAYATEVAWT 158
Query: 91 LIR 93
R
Sbjct: 159 RAR 161
>gi|19923903 myeloid-associated differentiation marker [Homo
sapiens]
Length = 322
Score = 29.3 bits (64), Expect = 0.71
Identities = 22/63 (34%), Positives = 29/63 (46%), Gaps = 2/63 (3%)
Query: 31 FDAAYHCTAALFYLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIATLLYVVHAVFS 90
F + C AALF LSAS++ T +Q R IAA FS IA + Y ++
Sbjct: 101 FPITFACYAALFCLSASII--YPTTYVQFLSHGRSRDHAIAATFFSCIACVAYATEVAWT 158
Query: 91 LIR 93
R
Sbjct: 159 RAR 161
>gi|4885121 chemokine (C-C motif) receptor 8 [Homo sapiens]
Length = 355
Score = 29.3 bits (64), Expect = 0.71
Identities = 19/70 (27%), Positives = 31/70 (44%), Gaps = 6/70 (8%)
Query: 22 LPDLLFIFEFDAAYHCTAALFYLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIATL 81
L DLLF+F F +YL + + GF Y ++ ++ + +
Sbjct: 79 LSDLLFVFSFPFQ------TYYLLDQWVFGTVMCKVVSGFYYIGFYSSMFFITLMSVDRY 132
Query: 82 LYVVHAVFSL 91
L VVHAV++L
Sbjct: 133 LAVVHAVYAL 142
>gi|154759277 monocyte to macrophage differentiation-associated 2
isoform 1 [Homo sapiens]
Length = 270
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 30 EFDAAYHCTAALFYLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIATLLYVVHAVF 89
E++ A +C F++ S+L + + D E I+A ++ L+VV VF
Sbjct: 32 EYEHAANCATHAFWIIPSILGSSNLYFLSDDDW-----ETISAWIYGLGLCGLFVVSTVF 86
Query: 90 SLIRWKSS 97
I WK S
Sbjct: 87 HTISWKKS 94
>gi|154759275 monocyte to macrophage differentiation-associated 2
isoform 2 [Homo sapiens]
Length = 246
Score = 28.9 bits (63), Expect = 0.92
Identities = 19/68 (27%), Positives = 31/68 (45%), Gaps = 5/68 (7%)
Query: 30 EFDAAYHCTAALFYLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIATLLYVVHAVF 89
E++ A +C F++ S+L + + D E I+A ++ L+VV VF
Sbjct: 32 EYEHAANCATHAFWIIPSILGSSNLYFLSDDDW-----ETISAWIYGLGLCGLFVVSTVF 86
Query: 90 SLIRWKSS 97
I WK S
Sbjct: 87 HTISWKKS 94
>gi|73486649 membrane-spanning 4-domains, subfamily A, member 3
isoform a [Homo sapiens]
Length = 214
Score = 26.6 bits (57), Expect = 4.6
Identities = 14/54 (25%), Positives = 23/54 (42%)
Query: 27 FIFEFDAAYHCTAALFYLSASVLEALATITMQDGFTYRHYHENIAAVVFSYIAT 80
F F F Y A+F+ S+ L +A I + + NIA+ + + T
Sbjct: 83 FFFTFYTGYPIWGAVFFCSSGTLSVVAGIKPTRTWIQNSFGMNIASATIALVGT 136
>gi|223278370 myeloid-associated differentiation marker-like 2 [Homo
sapiens]
Length = 307
Score = 26.2 bits (56), Expect = 6.0
Identities = 18/65 (27%), Positives = 28/65 (43%), Gaps = 9/65 (13%)
Query: 35 YHCTAALFYLSASVLEALATITMQDGFTYRH---------YHENIAAVVFSYIATLLYVV 85
Y A L YLSA+V+ + + G R + + +F+Y+ LLYVV
Sbjct: 234 YTFLAVLLYLSAAVIWPVFCFDPKYGEPKRPPNCARGSCPWDSQLVVAIFTYVNLLLYVV 293
Query: 86 HAVFS 90
+S
Sbjct: 294 DLAYS 298
>gi|13786129 RAB33B, member RAS oncogene family [Homo sapiens]
Length = 229
Score = 25.8 bits (55), Expect = 7.8
Identities = 12/29 (41%), Positives = 18/29 (62%)
Query: 64 RHYHENIAAVVFSYIATLLYVVHAVFSLI 92
+HY+ N+ AVVF Y T + H++ S I
Sbjct: 101 QHYYRNVHAVVFVYDMTNMASFHSLPSWI 129
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.328 0.136 0.408
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 3,168,569
Number of Sequences: 37866
Number of extensions: 97472
Number of successful extensions: 318
Number of sequences better than 10.0: 23
Number of HSP's better than 10.0 without gapping: 14
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 295
Number of HSP's gapped (non-prelim): 28
length of query: 97
length of database: 18,247,518
effective HSP length: 68
effective length of query: 29
effective length of database: 15,672,630
effective search space: 454506270
effective search space used: 454506270
T: 11
A: 40
X1: 15 ( 7.1 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.8 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.