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Search of human proteins with 38348408
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|38348408 hypothetical protein LOC375444 [Homo sapiens]
(638 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|38348408 hypothetical protein LOC375444 [Homo sapiens] 1307 0.0
gi|113722120 G protein-coupled receptor 98 precursor [Homo sapiens] 33 1.1
gi|42822866 ribonuclease/angiogenin inhibitor [Homo sapiens] 32 1.4
gi|42822864 ribonuclease/angiogenin inhibitor [Homo sapiens] 32 1.4
gi|42822868 ribonuclease/angiogenin inhibitor [Homo sapiens] 32 1.4
gi|42822870 ribonuclease/angiogenin inhibitor [Homo sapiens] 32 1.4
gi|42822874 ribonuclease/angiogenin inhibitor [Homo sapiens] 32 1.4
gi|42794608 ribonuclease/angiogenin inhibitor [Homo sapiens] 32 1.4
gi|42822872 ribonuclease/angiogenin inhibitor [Homo sapiens] 32 1.4
gi|21361547 ribonuclease/angiogenin inhibitor [Homo sapiens] 32 1.4
gi|66363697 pirin [Homo sapiens] 32 1.4
gi|4505823 pirin [Homo sapiens] 32 1.4
gi|55743130 ribosomal protein L32 [Homo sapiens] 32 2.3
gi|55743128 ribosomal protein L32 [Homo sapiens] 32 2.3
gi|4506635 ribosomal protein L32 [Homo sapiens] 32 2.3
gi|134142826 pericentriolar material 1 [Homo sapiens] 30 5.2
gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens] 30 6.8
gi|21040343 hemochromatosis protein isoform 4 precursor [Homo sa... 30 8.9
gi|118918407 spectrin repeat containing, nuclear envelope 2 isof... 30 8.9
gi|118918403 spectrin repeat containing, nuclear envelope 2 isof... 30 8.9
>gi|38348408 hypothetical protein LOC375444 [Homo sapiens]
Length = 638
Score = 1307 bits (3382), Expect = 0.0
Identities = 638/638 (100%), Positives = 638/638 (100%)
Query: 1 MAAELRMILYEDDSVQVQYVDGSTLQLSPCGSEFLFEKSPPVSAHPLEQPERIRQRTHFV 60
MAAELRMILYEDDSVQVQYVDGSTLQLSPCGSEFLFEKSPPVSAHPLEQPERIRQRTHFV
Sbjct: 1 MAAELRMILYEDDSVQVQYVDGSTLQLSPCGSEFLFEKSPPVSAHPLEQPERIRQRTHFV 60
Query: 61 ISTYREQLQRALDFRNSSATCPFLSETIIPSERKKHIFIDITEVRWPSLDTDGTMIYMES 120
ISTYREQLQRALDFRNSSATCPFLSETIIPSERKKHIFIDITEVRWPSLDTDGTMIYMES
Sbjct: 61 ISTYREQLQRALDFRNSSATCPFLSETIIPSERKKHIFIDITEVRWPSLDTDGTMIYMES 120
Query: 121 GIVKITSLDGHAYLCLPRSQHEFTVHFLCKVSQKSDSSAVLSETNNKAPKDKLVEKTGKI 180
GIVKITSLDGHAYLCLPRSQHEFTVHFLCKVSQKSDSSAVLSETNNKAPKDKLVEKTGKI
Sbjct: 121 GIVKITSLDGHAYLCLPRSQHEFTVHFLCKVSQKSDSSAVLSETNNKAPKDKLVEKTGKI 180
Query: 181 CIRGNLPGQRLKNKENEFHCQIMKSKETLKKMSCVNGTEGREELPSPGTKHTCVYTWVKQ 240
CIRGNLPGQRLKNKENEFHCQIMKSKETLKKMSCVNGTEGREELPSPGTKHTCVYTWVKQ
Sbjct: 181 CIRGNLPGQRLKNKENEFHCQIMKSKETLKKMSCVNGTEGREELPSPGTKHTCVYTWVKQ 240
Query: 241 CWSVAACPEEWKYPLSLALHFHNKISNMSKIDAHITQSRFLTSDISEERGKVVSVLPRAL 300
CWSVAACPEEWKYPLSLALHFHNKISNMSKIDAHITQSRFLTSDISEERGKVVSVLPRAL
Sbjct: 241 CWSVAACPEEWKYPLSLALHFHNKISNMSKIDAHITQSRFLTSDISEERGKVVSVLPRAL 300
Query: 301 SLSCPVPHLHRWNFCDSLLQRQSDEYSYPELVKMVWYKGVTYRLTHQNMNSIEIYSGDGS 360
SLSCPVPHLHRWNFCDSLLQRQSDEYSYPELVKMVWYKGVTYRLTHQNMNSIEIYSGDGS
Sbjct: 301 SLSCPVPHLHRWNFCDSLLQRQSDEYSYPELVKMVWYKGVTYRLTHQNMNSIEIYSGDGS 360
Query: 361 VFKSEGAYFGNYFTYYSIQEGSGKREEKTYSVNNLPPDRPGSPFTVGSLIKQATRILQHC 420
VFKSEGAYFGNYFTYYSIQEGSGKREEKTYSVNNLPPDRPGSPFTVGSLIKQATRILQHC
Sbjct: 361 VFKSEGAYFGNYFTYYSIQEGSGKREEKTYSVNNLPPDRPGSPFTVGSLIKQATRILQHC 420
Query: 421 VKMRLSLSHNYRICCWKMVPGINDSNILPLVLKESLIPSVGRFLAYSDDKVHAIFLDGIT 480
VKMRLSLSHNYRICCWKMVPGINDSNILPLVLKESLIPSVGRFLAYSDDKVHAIFLDGIT
Sbjct: 421 VKMRLSLSHNYRICCWKMVPGINDSNILPLVLKESLIPSVGRFLAYSDDKVHAIFLDGIT 480
Query: 481 LTLNWNFSSPIEKRQVNQGLNLGWCKLTFPDGQEQLIQIEHPEPYERYVTTVTSWCRRLT 540
LTLNWNFSSPIEKRQVNQGLNLGWCKLTFPDGQEQLIQIEHPEPYERYVTTVTSWCRRLT
Sbjct: 481 LTLNWNFSSPIEKRQVNQGLNLGWCKLTFPDGQEQLIQIEHPEPYERYVTTVTSWCRRLT 540
Query: 541 QTSPREMPTHSSSSVLQENWSVASELEKIQKFNLLLENSGILNQISNKKNEQQSFDHYKP 600
QTSPREMPTHSSSSVLQENWSVASELEKIQKFNLLLENSGILNQISNKKNEQQSFDHYKP
Sbjct: 541 QTSPREMPTHSSSSVLQENWSVASELEKIQKFNLLLENSGILNQISNKKNEQQSFDHYKP 600
Query: 601 GSSETLLGEVNENRVSIALKKTSEILHDIDCLLSNSKK 638
GSSETLLGEVNENRVSIALKKTSEILHDIDCLLSNSKK
Sbjct: 601 GSSETLLGEVNENRVSIALKKTSEILHDIDCLLSNSKK 638
>gi|113722120 G protein-coupled receptor 98 precursor [Homo sapiens]
Length = 6306
Score = 32.7 bits (73), Expect = 1.1
Identities = 19/60 (31%), Positives = 33/60 (55%), Gaps = 7/60 (11%)
Query: 73 DFRNSSATCPFLSETIIPSERKKHIFIDITEVRWPSLDTD--GTMIYMESGIVKITSLDG 130
D++N + T F P ER K+IFI+IT+ P L+ ++ +E G+ ++ +DG
Sbjct: 1769 DYQNVAGTLEFQ-----PGERYKYIFINITDNSIPELEKSFKVELLNLEGGVAELFRVDG 1823
>gi|42822866 ribonuclease/angiogenin inhibitor [Homo sapiens]
Length = 461
Score = 32.3 bits (72), Expect = 1.4
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 200 CQIMKSKETLKKMSCVN---GTEGR----EELPSPGTKHTCVYTWVKQCWSVAAC 247
C+++++KE+LK++S G EG E L PG + + WVK C AAC
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL--WVKSCSFTAAC 329
>gi|42822864 ribonuclease/angiogenin inhibitor [Homo sapiens]
Length = 461
Score = 32.3 bits (72), Expect = 1.4
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 200 CQIMKSKETLKKMSCVN---GTEGR----EELPSPGTKHTCVYTWVKQCWSVAAC 247
C+++++KE+LK++S G EG E L PG + + WVK C AAC
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL--WVKSCSFTAAC 329
>gi|42822868 ribonuclease/angiogenin inhibitor [Homo sapiens]
Length = 461
Score = 32.3 bits (72), Expect = 1.4
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 200 CQIMKSKETLKKMSCVN---GTEGR----EELPSPGTKHTCVYTWVKQCWSVAAC 247
C+++++KE+LK++S G EG E L PG + + WVK C AAC
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL--WVKSCSFTAAC 329
>gi|42822870 ribonuclease/angiogenin inhibitor [Homo sapiens]
Length = 461
Score = 32.3 bits (72), Expect = 1.4
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 200 CQIMKSKETLKKMSCVN---GTEGR----EELPSPGTKHTCVYTWVKQCWSVAAC 247
C+++++KE+LK++S G EG E L PG + + WVK C AAC
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL--WVKSCSFTAAC 329
>gi|42822874 ribonuclease/angiogenin inhibitor [Homo sapiens]
Length = 461
Score = 32.3 bits (72), Expect = 1.4
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 200 CQIMKSKETLKKMSCVN---GTEGR----EELPSPGTKHTCVYTWVKQCWSVAAC 247
C+++++KE+LK++S G EG E L PG + + WVK C AAC
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL--WVKSCSFTAAC 329
>gi|42794608 ribonuclease/angiogenin inhibitor [Homo sapiens]
Length = 461
Score = 32.3 bits (72), Expect = 1.4
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 200 CQIMKSKETLKKMSCVN---GTEGR----EELPSPGTKHTCVYTWVKQCWSVAAC 247
C+++++KE+LK++S G EG E L PG + + WVK C AAC
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL--WVKSCSFTAAC 329
>gi|42822872 ribonuclease/angiogenin inhibitor [Homo sapiens]
Length = 461
Score = 32.3 bits (72), Expect = 1.4
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 200 CQIMKSKETLKKMSCVN---GTEGR----EELPSPGTKHTCVYTWVKQCWSVAAC 247
C+++++KE+LK++S G EG E L PG + + WVK C AAC
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL--WVKSCSFTAAC 329
>gi|21361547 ribonuclease/angiogenin inhibitor [Homo sapiens]
Length = 461
Score = 32.3 bits (72), Expect = 1.4
Identities = 20/55 (36%), Positives = 30/55 (54%), Gaps = 9/55 (16%)
Query: 200 CQIMKSKETLKKMSCVN---GTEGR----EELPSPGTKHTCVYTWVKQCWSVAAC 247
C+++++KE+LK++S G EG E L PG + + WVK C AAC
Sbjct: 277 CRVLRAKESLKELSLAGNELGDEGARLLCETLLEPGCQLESL--WVKSCSFTAAC 329
>gi|66363697 pirin [Homo sapiens]
Length = 290
Score = 32.3 bits (72), Expect = 1.4
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 14/70 (20%)
Query: 8 ILYEDDSVQVQYVDGSTLQLSPCGSEFLFEKSPPVSAHPLEQPERIRQRTHFVISTYREQ 67
+L E DSVQV+ D P S F+ ++ PL +P + Q FV++T E
Sbjct: 219 VLGEGDSVQVENKD-------PKRSHFVL-----IAGEPLREP--VIQHGPFVMNTNEEI 264
Query: 68 LQRALDFRNS 77
Q LDFRN+
Sbjct: 265 SQAILDFRNA 274
>gi|4505823 pirin [Homo sapiens]
Length = 290
Score = 32.3 bits (72), Expect = 1.4
Identities = 25/70 (35%), Positives = 35/70 (50%), Gaps = 14/70 (20%)
Query: 8 ILYEDDSVQVQYVDGSTLQLSPCGSEFLFEKSPPVSAHPLEQPERIRQRTHFVISTYREQ 67
+L E DSVQV+ D P S F+ ++ PL +P + Q FV++T E
Sbjct: 219 VLGEGDSVQVENKD-------PKRSHFVL-----IAGEPLREP--VIQHGPFVMNTNEEI 264
Query: 68 LQRALDFRNS 77
Q LDFRN+
Sbjct: 265 SQAILDFRNA 274
>gi|55743130 ribosomal protein L32 [Homo sapiens]
Length = 135
Score = 31.6 bits (70), Expect = 2.3
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 136 LPRSQHEFTVH--------FLCKVSQKSDSSAVLSETNNKAPKDKLVEKTGKICIRGNLP 187
LP +F VH +C S ++ + +S N KA +VE+ ++ IR P
Sbjct: 70 LPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKA----IVERAAQLAIRVTNP 125
Query: 188 GQRLKNKENE 197
RL+++ENE
Sbjct: 126 NARLRSEENE 135
>gi|55743128 ribosomal protein L32 [Homo sapiens]
Length = 135
Score = 31.6 bits (70), Expect = 2.3
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 136 LPRSQHEFTVH--------FLCKVSQKSDSSAVLSETNNKAPKDKLVEKTGKICIRGNLP 187
LP +F VH +C S ++ + +S N KA +VE+ ++ IR P
Sbjct: 70 LPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKA----IVERAAQLAIRVTNP 125
Query: 188 GQRLKNKENE 197
RL+++ENE
Sbjct: 126 NARLRSEENE 135
>gi|4506635 ribosomal protein L32 [Homo sapiens]
Length = 135
Score = 31.6 bits (70), Expect = 2.3
Identities = 21/70 (30%), Positives = 34/70 (48%), Gaps = 12/70 (17%)
Query: 136 LPRSQHEFTVH--------FLCKVSQKSDSSAVLSETNNKAPKDKLVEKTGKICIRGNLP 187
LP +F VH +C S ++ + +S N KA +VE+ ++ IR P
Sbjct: 70 LPSGFRKFLVHNVKELEVLLMCNKSYCAEIAHNVSSKNRKA----IVERAAQLAIRVTNP 125
Query: 188 GQRLKNKENE 197
RL+++ENE
Sbjct: 126 NARLRSEENE 135
>gi|134142826 pericentriolar material 1 [Homo sapiens]
Length = 2024
Score = 30.4 bits (67), Expect = 5.2
Identities = 24/74 (32%), Positives = 34/74 (45%), Gaps = 11/74 (14%)
Query: 542 TSPREMPTHSSSSVLQ-ENWSVASELEKIQKFNLLLENSGILNQISNKKNEQQSFDHYKP 600
TS PT S S + EN + EK+QK LN++ + NE + HY
Sbjct: 462 TSSVPYPTASLVSQNESENEGHLNPSEKLQK----------LNEVRKRLNELRELVHYYE 511
Query: 601 GSSETLLGEVNENR 614
+S+ + VNENR
Sbjct: 512 QTSDMMTDAVNENR 525
>gi|47419930 chondroitin sulfate proteoglycan 4 [Homo sapiens]
Length = 2322
Score = 30.0 bits (66), Expect = 6.8
Identities = 14/35 (40%), Positives = 21/35 (60%), Gaps = 3/35 (8%)
Query: 496 VNQGLNLGWCKLTFPDGQEQ---LIQIEHPEPYER 527
V+ G + GW +L DGQ Q L++++ EPY R
Sbjct: 1094 VHSGADRGWIQLQVSDGQHQATALLEVQASEPYLR 1128
>gi|21040343 hemochromatosis protein isoform 4 precursor [Homo
sapiens]
Length = 256
Score = 29.6 bits (65), Expect = 8.9
Identities = 30/134 (22%), Positives = 50/134 (37%), Gaps = 19/134 (14%)
Query: 400 PGSPFTVGSLIKQATRILQHCVKMRLSLSHNYRICCWKMVPGINDSNILPLVLKESLIPS 459
P +P+ + Q L +K H + + W ++ N S + PLV + S
Sbjct: 70 PRTPWVSSRISSQMWLQLSQSLK---GWDHMFTVDFWTIMENHNHSKVPPLVKVTHHVTS 126
Query: 460 VGRFLAYSDDKVHAIFLDGITLTLNW-NFSSPIEKRQVN--------QGLNLGWCKLTFP 510
L + A+ +T+ W P++ ++ G GW L P
Sbjct: 127 SVTTL-----RCRALNYYPQNITMKWLKDKQPMDAKEFEPKDVLPNGDGTYQGWITLAVP 181
Query: 511 DGQEQ--LIQIEHP 522
G+EQ Q+EHP
Sbjct: 182 PGEEQRYTCQVEHP 195
>gi|118918407 spectrin repeat containing, nuclear envelope 2 isoform 5
[Homo sapiens]
Length = 6907
Score = 29.6 bits (65), Expect = 8.9
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 510 PDGQEQLIQIEHPE-PYERYVTTVTSWCRRLTQTSPREMPTHSSSSVLQENWSVASELEK 568
PD QE+L Q++ + P + +T + SW + + E HS SS Q V L+K
Sbjct: 5045 PDIQEKLHQLQMEKLPSRKAITEMISWMNNVEHQTSDEDSVHSPSSASQ----VKHLLQK 5100
Query: 569 IQKFNLLLE 577
++F + ++
Sbjct: 5101 HKEFRMEMD 5109
>gi|118918403 spectrin repeat containing, nuclear envelope 2 isoform 1
[Homo sapiens]
Length = 6885
Score = 29.6 bits (65), Expect = 8.9
Identities = 20/69 (28%), Positives = 35/69 (50%), Gaps = 5/69 (7%)
Query: 510 PDGQEQLIQIEHPE-PYERYVTTVTSWCRRLTQTSPREMPTHSSSSVLQENWSVASELEK 568
PD QE+L Q++ + P + +T + SW + + E HS SS Q V L+K
Sbjct: 5045 PDIQEKLHQLQMEKLPSRKAITEMISWMNNVEHQTSDEDSVHSPSSASQ----VKHLLQK 5100
Query: 569 IQKFNLLLE 577
++F + ++
Sbjct: 5101 HKEFRMEMD 5109
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.317 0.132 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 25,530,648
Number of Sequences: 37866
Number of extensions: 1184927
Number of successful extensions: 3013
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 1
Number of HSP's successfully gapped in prelim test: 19
Number of HSP's that attempted gapping in prelim test: 3002
Number of HSP's gapped (non-prelim): 21
length of query: 638
length of database: 18,247,518
effective HSP length: 109
effective length of query: 529
effective length of database: 14,120,124
effective search space: 7469545596
effective search space used: 7469545596
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.