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Search of human proteins with 37594457
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|37594457 nudix-type motif 9 isoform b [Homo sapiens]
(300 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|37594457 nudix-type motif 9 isoform b [Homo sapiens] 626 e-180
gi|13129010 nudix-type motif 9 isoform a [Homo sapiens] 626 e-180
gi|4507689 transient receptor potential cation channel, subfamil... 165 4e-41
gi|118026927 nudix (nucleoside diphosphate linked moiety X)-type... 36 0.036
gi|17865632 mitochondrial tumor suppressor 1 isoform 5 [Homo sap... 33 0.23
gi|50348611 mitochondrial tumor suppressor 1 isoform 1 [Homo sap... 33 0.23
gi|50348617 mitochondrial tumor suppressor 1 isoform 2 [Homo sap... 33 0.23
gi|50348626 mitochondrial tumor suppressor 1 isoform 4 [Homo sap... 33 0.23
gi|163644333 zinc finger protein 397 opposite strand [Homo sapiens] 33 0.23
gi|149363695 hypothetical protein LOC25943 [Homo sapiens] 33 0.40
gi|156104908 myosin heavy chain 6 [Homo sapiens] 32 0.52
gi|110611151 snurportin 1 [Homo sapiens] 31 1.5
gi|110611149 snurportin 1 [Homo sapiens] 31 1.5
gi|5031833 snurportin 1 [Homo sapiens] 31 1.5
gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [H... 31 1.5
gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo... 31 1.5
gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo ... 31 1.5
gi|66773344 hypothetical protein LOC140710 [Homo sapiens] 31 1.5
gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo s... 30 2.0
gi|87298939 hypothetical protein LOC131831 [Homo sapiens] 30 2.0
gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal [... 30 2.0
gi|53759148 retinoblastoma binding protein 5 [Homo sapiens] 30 2.0
gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo... 30 2.6
gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo... 30 2.6
gi|42476009 highly divergent homeobox [Homo sapiens] 30 3.4
gi|205277396 dynactin 1 isoform 4 [Homo sapiens] 29 4.4
gi|205277392 dynactin 1 isoform 3 [Homo sapiens] 29 4.4
gi|13259508 dynactin 1 isoform 2 [Homo sapiens] 29 4.4
gi|13259510 dynactin 1 isoform 1 [Homo sapiens] 29 4.4
gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo... 29 4.4
>gi|37594457 nudix-type motif 9 isoform b [Homo sapiens]
Length = 300
Score = 626 bits (1614), Expect = e-180
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MSGSNGSKENSHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRW 60
MSGSNGSKENSHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRW
Sbjct: 1 MSGSNGSKENSHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRW 60
Query: 61 ADPQISESNFSPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHA 120
ADPQISESNFSPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHA
Sbjct: 61 ADPQISESNFSPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHA 120
Query: 121 ADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKRE 180
ADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKRE
Sbjct: 121 ADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKRE 180
Query: 181 FGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDE 240
FGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDE
Sbjct: 181 FGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDE 240
Query: 241 TGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDSEADCHAL 300
TGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDSEADCHAL
Sbjct: 241 TGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDSEADCHAL 300
>gi|13129010 nudix-type motif 9 isoform a [Homo sapiens]
Length = 350
Score = 626 bits (1614), Expect = e-180
Identities = 300/300 (100%), Positives = 300/300 (100%)
Query: 1 MSGSNGSKENSHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRW 60
MSGSNGSKENSHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRW
Sbjct: 51 MSGSNGSKENSHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRW 110
Query: 61 ADPQISESNFSPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHA 120
ADPQISESNFSPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHA
Sbjct: 111 ADPQISESNFSPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHA 170
Query: 121 ADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKRE 180
ADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKRE
Sbjct: 171 ADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKRE 230
Query: 181 FGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDE 240
FGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDE
Sbjct: 231 FGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDE 290
Query: 241 TGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDSEADCHAL 300
TGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDSEADCHAL
Sbjct: 291 TGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHWSEDSEADCHAL 350
>gi|4507689 transient receptor potential cation channel, subfamily M,
member 2 [Homo sapiens]
Length = 1503
Score = 165 bits (418), Expect = 4e-41
Identities = 102/285 (35%), Positives = 146/285 (51%), Gaps = 21/285 (7%)
Query: 9 ENSHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDYKPVEYTAVSVLAGPRWADPQISES 68
++ H AR YP V R VPNEKV W E+ Y P YTA A E
Sbjct: 1236 DSYHVNARHLLYPNCPVTRFPVPNEKVPWETEFLIYDPPFYTAERKDAAAMDPMGDTLEP 1295
Query: 69 NFSPKFNEKDGHVERKSKNGLYEIENGRPRNPAGRTGLVGRGLLGRWGPNHAADPIITRW 128
+ ++N DG +R+S +G Y ++ G P NP GRTGL GRG L +GPNH P++TRW
Sbjct: 1296 LSTIQYNVVDGLRDRRSFHGPYTVQAGLPLNPMGRTGLRGRGSLSCFGPNHTLYPMVTRW 1355
Query: 129 KRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNS 188
+R+ G + K +L+ + +K WA+PGG +PGE + LKR +E S
Sbjct: 1356 RRNEDGAICRKSI--KKMLEVLVVKLPLSEHWALPGGSREPGEMLPRKLKRILRQEHWPS 1413
Query: 189 LQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWMETEAVNYHDETGEIMD-- 246
E L K + +YKGY+DDPRNTDNAW+ET AV+ H + ++
Sbjct: 1414 F-----------ENLLKC----GMEVYKGYMDDPRNTDNAWIETVAVSVHFQDQNDVELN 1458
Query: 247 --NLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRDAHW 289
N L A D ++W ++ ++ LYA+H ++ A + AH+
Sbjct: 1459 RLNSNLHACDSGASIRWQVVDRRIPLYANHKTLLQKAAAEFGAHY 1503
>gi|118026927 nudix (nucleoside diphosphate linked moiety X)-type
motif 18 [Homo sapiens]
Length = 323
Score = 36.2 bits (82), Expect = 0.036
Identities = 17/40 (42%), Positives = 23/40 (57%)
Query: 146 ILQFVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEA 185
+L KR+ G W +P G ++PGE I L+RE EEA
Sbjct: 57 VLLIQEAKRECRGSWYLPAGRMEPGETIVEALQREVKEEA 96
>gi|17865632 mitochondrial tumor suppressor 1 isoform 5 [Homo
sapiens]
Length = 436
Score = 33.5 bits (75), Expect = 0.23
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 31/130 (23%)
Query: 170 GEKISATLKREFGEEALNSLQKT--------SAEKREIEEKLHKLFSQDHLVIYKGYVDD 221
GE ++A+ E E+A N LQ AEK E E +L + +++++ + Y++
Sbjct: 132 GELVTASTTCEKLEKARNELQTVYEAFVQQHQAEKTERENRLKEFYTREYEKLRDTYIE- 190
Query: 222 PRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLV 281
EA Y + E DN L A + KL++ ASHS+ ++L+
Sbjct: 191 -----------EAEKYKMQLQEQFDN--LNAAHE---------TSKLEIEASHSEKLELL 228
Query: 282 AEKRDAHWSE 291
+ +A SE
Sbjct: 229 KKAYEASLSE 238
>gi|50348611 mitochondrial tumor suppressor 1 isoform 1 [Homo sapiens]
Length = 1270
Score = 33.5 bits (75), Expect = 0.23
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 31/130 (23%)
Query: 170 GEKISATLKREFGEEALNSLQKT--------SAEKREIEEKLHKLFSQDHLVIYKGYVDD 221
GE ++A+ E E+A N LQ AEK E E +L + +++++ + Y++
Sbjct: 966 GELVTASTTCEKLEKARNELQTVYEAFVQQHQAEKTERENRLKEFYTREYEKLRDTYIE- 1024
Query: 222 PRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLV 281
EA Y + E DN L A + KL++ ASHS+ ++L+
Sbjct: 1025 -----------EAEKYKMQLQEQFDN--LNAAHE---------TSKLEIEASHSEKLELL 1062
Query: 282 AEKRDAHWSE 291
+ +A SE
Sbjct: 1063 KKAYEASLSE 1072
>gi|50348617 mitochondrial tumor suppressor 1 isoform 2 [Homo sapiens]
Length = 1216
Score = 33.5 bits (75), Expect = 0.23
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 31/130 (23%)
Query: 170 GEKISATLKREFGEEALNSLQKT--------SAEKREIEEKLHKLFSQDHLVIYKGYVDD 221
GE ++A+ E E+A N LQ AEK E E +L + +++++ + Y++
Sbjct: 912 GELVTASTTCEKLEKARNELQTVYEAFVQQHQAEKTERENRLKEFYTREYEKLRDTYIE- 970
Query: 222 PRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLV 281
EA Y + E DN L A + KL++ ASHS+ ++L+
Sbjct: 971 -----------EAEKYKMQLQEQFDN--LNAAHE---------TSKLEIEASHSEKLELL 1008
Query: 282 AEKRDAHWSE 291
+ +A SE
Sbjct: 1009 KKAYEASLSE 1018
>gi|50348626 mitochondrial tumor suppressor 1 isoform 4 [Homo
sapiens]
Length = 517
Score = 33.5 bits (75), Expect = 0.23
Identities = 34/130 (26%), Positives = 58/130 (44%), Gaps = 31/130 (23%)
Query: 170 GEKISATLKREFGEEALNSLQKT--------SAEKREIEEKLHKLFSQDHLVIYKGYVDD 221
GE ++A+ E E+A N LQ AEK E E +L + +++++ + Y++
Sbjct: 213 GELVTASTTCEKLEKARNELQTVYEAFVQQHQAEKTERENRLKEFYTREYEKLRDTYIE- 271
Query: 222 PRNTDNAWMETEAVNYHDETGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLV 281
EA Y + E DN L A + KL++ ASHS+ ++L+
Sbjct: 272 -----------EAEKYKMQLQEQFDN--LNAAHE---------TSKLEIEASHSEKLELL 309
Query: 282 AEKRDAHWSE 291
+ +A SE
Sbjct: 310 KKAYEASLSE 319
>gi|163644333 zinc finger protein 397 opposite strand [Homo sapiens]
Length = 494
Score = 33.5 bits (75), Expect = 0.23
Identities = 23/106 (21%), Positives = 43/106 (40%), Gaps = 1/106 (0%)
Query: 106 LVGRGLLGRWGPNHAADPIITRWKRDSSGNKIMHPVSGKHILQFVAIKRKDCGEWAIPGG 165
+ G L N P+ + K ++ ++ G+ + V + +++ E
Sbjct: 149 MTSTGALKSLSLNSPVQPLENQCKTETQESQAFQERDGRMVAGKVLMAKQEIVECVASAA 208
Query: 166 MVDPGEKISATLKREFGEEALNSLQKTSAEK-REIEEKLHKLFSQD 210
M+ PG+ T + EEAL L + +K K+ +L SQD
Sbjct: 209 MISPGKLPGETHSQRIAEEALGGLDNSKKQKGNAAGNKISQLPSQD 254
>gi|149363695 hypothetical protein LOC25943 [Homo sapiens]
Length = 1177
Score = 32.7 bits (73), Expect = 0.40
Identities = 20/72 (27%), Positives = 32/72 (44%), Gaps = 5/72 (6%)
Query: 149 FVAIKRKDCGEWAIPGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFS 208
F+ K+CG W + ++D E A + + AL + Q SA + K +L
Sbjct: 766 FLVTLHKECGRWMVYRQIMDSSECFHAAHFQRYLSSALEAQQNRSARQSAYIRKKTRL-- 823
Query: 209 QDHLVIYKGYVD 220
LV+ +GY D
Sbjct: 824 ---LVVLQGYTD 832
>gi|156104908 myosin heavy chain 6 [Homo sapiens]
Length = 1939
Score = 32.3 bits (72), Expect = 0.52
Identities = 16/39 (41%), Positives = 25/39 (64%), Gaps = 1/39 (2%)
Query: 171 EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQ 209
EK AT+K EFG +L+K+ A ++E+EEK+ L +
Sbjct: 848 EKEMATMKEEFGR-IKETLEKSEARRKELEEKMVSLLQE 885
>gi|110611151 snurportin 1 [Homo sapiens]
Length = 360
Score = 30.8 bits (68), Expect = 1.5
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 35 VGWLVEWQDYKPVEYTAVSVLAGPRWADP--------QISESNFSPKFNEKDGHVERKSK 86
VGWL + Y + V+V AGP P QI E S K K+ + S+
Sbjct: 274 VGWL---RPYMVSDVLGVAVPAGPLTTKPDYAGHQLQQIMEHKKSQKEGMKEKLTHKASE 330
Query: 87 NGLYEIEN 94
NG YE+E+
Sbjct: 331 NGHYELEH 338
>gi|110611149 snurportin 1 [Homo sapiens]
Length = 360
Score = 30.8 bits (68), Expect = 1.5
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 35 VGWLVEWQDYKPVEYTAVSVLAGPRWADP--------QISESNFSPKFNEKDGHVERKSK 86
VGWL + Y + V+V AGP P QI E S K K+ + S+
Sbjct: 274 VGWL---RPYMVSDVLGVAVPAGPLTTKPDYAGHQLQQIMEHKKSQKEGMKEKLTHKASE 330
Query: 87 NGLYEIEN 94
NG YE+E+
Sbjct: 331 NGHYELEH 338
>gi|5031833 snurportin 1 [Homo sapiens]
Length = 360
Score = 30.8 bits (68), Expect = 1.5
Identities = 23/68 (33%), Positives = 31/68 (45%), Gaps = 11/68 (16%)
Query: 35 VGWLVEWQDYKPVEYTAVSVLAGPRWADP--------QISESNFSPKFNEKDGHVERKSK 86
VGWL + Y + V+V AGP P QI E S K K+ + S+
Sbjct: 274 VGWL---RPYMVSDVLGVAVPAGPLTTKPDYAGHQLQQIMEHKKSQKEGMKEKLTHKASE 330
Query: 87 NGLYEIEN 94
NG YE+E+
Sbjct: 331 NGHYELEH 338
>gi|98986453 myosin, heavy chain 3, skeletal muscle, embryonic [Homo
sapiens]
Length = 1940
Score = 30.8 bits (68), Expect = 1.5
Identities = 16/39 (41%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 171 EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQ 209
EK AT+K EF ++ + L K+ A+++E+EEKL L +
Sbjct: 847 EKEMATMKEEF-QKTKDELAKSEAKRKELEEKLVTLVQE 884
>gi|115527082 myosin, heavy chain 1, skeletal muscle, adult [Homo
sapiens]
Length = 1939
Score = 30.8 bits (68), Expect = 1.5
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 171 EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQ 209
EK A +K EF E+ L KT A+++E+EEK+ L +
Sbjct: 850 EKEMANMKEEF-EKTKEELAKTEAKRKELEEKMVTLMQE 887
>gi|110611903 myosin, heavy polypeptide 4, skeletal muscle [Homo
sapiens]
Length = 1939
Score = 30.8 bits (68), Expect = 1.5
Identities = 16/39 (41%), Positives = 24/39 (61%), Gaps = 1/39 (2%)
Query: 171 EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQ 209
EK A +K EF E+ L KT A+++E+EEK+ L +
Sbjct: 850 EKEMANMKEEF-EKTKEELAKTEAKRKELEEKMVTLMQE 887
>gi|66773344 hypothetical protein LOC140710 [Homo sapiens]
Length = 1016
Score = 30.8 bits (68), Expect = 1.5
Identities = 17/70 (24%), Positives = 36/70 (51%), Gaps = 9/70 (12%)
Query: 178 KREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVD-------DPRNTDNAWM 230
+R + +E L +++ EK+++E+++ +L Q+ L + D + DN+W
Sbjct: 841 ERNWSQEKLQLVERLQGEKQQVEQQVKEL--QNRLSQLQKAADPWVLKHSELEKQDNSWK 898
Query: 231 ETEAVNYHDE 240
ET + HD+
Sbjct: 899 ETRSEKIHDK 908
>gi|239753314 PREDICTED: similar to RIKEN cDNA C230030N03 [Homo
sapiens]
Length = 1183
Score = 30.4 bits (67), Expect = 2.0
Identities = 22/75 (29%), Positives = 41/75 (54%), Gaps = 3/75 (4%)
Query: 8 KENSHNKARTSPYPGSKVERSQVPNEKVGWLVEWQDY-KPVEYTAVSVLAGPRWADPQIS 66
KEN+H ++ +SP G K E+S++ ++ +D P + T VS+ GP P +
Sbjct: 857 KENTHERSPSSP-KGEK-EKSRLRQGSWRAFLKSKDAGSPKKPTLVSLPLGPEVLSPAET 914
Query: 67 ESNFSPKFNEKDGHV 81
+S+ + +K+G+V
Sbjct: 915 DSHCEERAEDKEGYV 929
>gi|87298939 hypothetical protein LOC131831 [Homo sapiens]
Length = 663
Score = 30.4 bits (67), Expect = 2.0
Identities = 20/94 (21%), Positives = 42/94 (44%), Gaps = 10/94 (10%)
Query: 163 PGGMVDPGEKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDP 222
P G DPG+K + E EE ++ E+ E+EE+ ++ ++ V+ + V +
Sbjct: 7 PSGFGDPGKKDQKESEEELEEE--EEEEEVEEEEEEVEEEEEEVEEEEEEVVEEELVGEE 64
Query: 223 R--------NTDNAWMETEAVNYHDETGEIMDNL 248
+ + + W T+ +Y D+ ++ L
Sbjct: 65 QELEAPETFSEEYLWKVTDIGDYDDDFPDVRPRL 98
>gi|153945790 myosin, heavy chain 8, skeletal muscle, perinatal
[Homo sapiens]
Length = 1937
Score = 30.4 bits (67), Expect = 2.0
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 171 EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQ 209
EK AT+K EF ++ + L K+ A+++E+EEK+ L +
Sbjct: 849 EKEMATMKEEF-QKTKDELAKSEAKRKELEEKMVTLLKE 886
>gi|53759148 retinoblastoma binding protein 5 [Homo sapiens]
Length = 538
Score = 30.4 bits (67), Expect = 2.0
Identities = 18/63 (28%), Positives = 30/63 (47%), Gaps = 2/63 (3%)
Query: 39 VEWQDYKPVEYTAVSVLAGPRWADPQISE-SNFSPKFNEKDGHVERKSKNGLYEIENGRP 97
V W +P+ ++S WA Q+ S F+P F E D +VE + + ++IE+
Sbjct: 301 VAWHPVRPI-IASISSGVVSIWAQNQVENWSAFAPDFKELDENVEYEERESEFDIEDEDK 359
Query: 98 RNP 100
P
Sbjct: 360 SEP 362
>gi|153791586 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 30.0 bits (66), Expect = 2.6
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 171 EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQ 209
EK AT+K EF ++ + L K+ A+++E+EEK+ L +
Sbjct: 852 EKEMATMKEEF-QKIKDELAKSEAKRKELEEKMVTLLKE 889
>gi|153792663 myosin, heavy chain 2, skeletal muscle, adult [Homo
sapiens]
Length = 1941
Score = 30.0 bits (66), Expect = 2.6
Identities = 15/39 (38%), Positives = 26/39 (66%), Gaps = 1/39 (2%)
Query: 171 EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQ 209
EK AT+K EF ++ + L K+ A+++E+EEK+ L +
Sbjct: 852 EKEMATMKEEF-QKIKDELAKSEAKRKELEEKMVTLLKE 889
>gi|42476009 highly divergent homeobox [Homo sapiens]
Length = 690
Score = 29.6 bits (65), Expect = 3.4
Identities = 19/73 (26%), Positives = 35/73 (47%), Gaps = 3/73 (4%)
Query: 5 NGSKENSHNKARTSPYPGSKVERSQVPNEK---VGWLVEWQDYKPVEYTAVSVLAGPRWA 61
+GS + N++ T P PG + SQ+ N + L + ++Y T++ + ++
Sbjct: 329 SGSSLRAENQSTTLPGPGRNMPNSQMVNIRDMSDNVLYQNRNYHLTPRTSLHTASSTMYS 388
Query: 62 DPQISESNFSPKF 74
+ SNFSP F
Sbjct: 389 NTNPLRSNFSPHF 401
>gi|205277396 dynactin 1 isoform 4 [Homo sapiens]
Length = 1139
Score = 29.3 bits (64), Expect = 4.4
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 166 MVDPGEKIS-ATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRN 224
M D + I ATL +E EE SLQ+ E ++E++ +L + L I K +++ +
Sbjct: 163 MADTADAIEMATLDKEMAEERAESLQQ---EVEALKERVDELTTD--LEILKAEIEE-KG 216
Query: 225 TDNAWMETEAVNYHDETGEIMDNLM-LEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAE 283
+D A + ++ + D L+ + + K + V + KL +Q +++V +
Sbjct: 217 SDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQ---KLMEKKNQELEVVRQ 273
Query: 284 KRDAHWSEDSEAD 296
+R+ E S+A+
Sbjct: 274 QRERLQEELSQAE 286
>gi|205277392 dynactin 1 isoform 3 [Homo sapiens]
Length = 1253
Score = 29.3 bits (64), Expect = 4.4
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 166 MVDPGEKIS-ATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRN 224
M D + I ATL +E EE SLQ+ E ++E++ +L + L I K +++ +
Sbjct: 277 MADTADAIEMATLDKEMAEERAESLQQ---EVEALKERVDELTTD--LEILKAEIEE-KG 330
Query: 225 TDNAWMETEAVNYHDETGEIMDNLM-LEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAE 283
+D A + ++ + D L+ + + K + V + KL +Q +++V +
Sbjct: 331 SDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQ---KLMEKKNQELEVVRQ 387
Query: 284 KRDAHWSEDSEAD 296
+R+ E S+A+
Sbjct: 388 QRERLQEELSQAE 400
>gi|13259508 dynactin 1 isoform 2 [Homo sapiens]
Length = 1144
Score = 29.3 bits (64), Expect = 4.4
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 166 MVDPGEKIS-ATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRN 224
M D + I ATL +E EE SLQ+ E ++E++ +L + L I K +++ +
Sbjct: 163 MADTADAIEMATLDKEMAEERAESLQQ---EVEALKERVDELTTD--LEILKAEIEE-KG 216
Query: 225 TDNAWMETEAVNYHDETGEIMDNLM-LEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAE 283
+D A + ++ + D L+ + + K + V + KL +Q +++V +
Sbjct: 217 SDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQ---KLMEKKNQELEVVRQ 273
Query: 284 KRDAHWSEDSEAD 296
+R+ E S+A+
Sbjct: 274 QRERLQEELSQAE 286
>gi|13259510 dynactin 1 isoform 1 [Homo sapiens]
Length = 1278
Score = 29.3 bits (64), Expect = 4.4
Identities = 32/133 (24%), Positives = 64/133 (48%), Gaps = 11/133 (8%)
Query: 166 MVDPGEKIS-ATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRN 224
M D + I ATL +E EE SLQ+ E ++E++ +L + L I K +++ +
Sbjct: 297 MADTADAIEMATLDKEMAEERAESLQQ---EVEALKERVDELTTD--LEILKAEIEE-KG 350
Query: 225 TDNAWMETEAVNYHDETGEIMDNLM-LEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAE 283
+D A + ++ + D L+ + + K + V + KL +Q +++V +
Sbjct: 351 SDGAASSYQLKQLEEQNARLKDALVRMRDLSSSEKQEHVKLQ---KLMEKKNQELEVVRQ 407
Query: 284 KRDAHWSEDSEAD 296
+R+ E S+A+
Sbjct: 408 QRERLQEELSQAE 420
>gi|110624781 myosin, heavy polypeptide 13, skeletal muscle [Homo
sapiens]
Length = 1938
Score = 29.3 bits (64), Expect = 4.4
Identities = 32/120 (26%), Positives = 55/120 (45%), Gaps = 27/120 (22%)
Query: 171 EKISATLKREFGEEALNSLQKTSAEKREIEEKLHKLFSQDHLVIYKGYVDDPRNTDNAWM 230
EK AT+K +F E L ++ A ++E+EEK+ L + +N +
Sbjct: 850 EKEMATMKEDF-ERTKEELARSEARRKELEEKMVSLLQE-------------KNDLQLQV 895
Query: 231 ETEAVNYHDE----TGEIMDNLMLEAGDDAGKVKWVDINDKLKLYASHSQFIKLVAEKRD 286
++E N D G I ++LEA KVK ++ ++L+ +LVA+KR+
Sbjct: 896 QSETENLMDAEERCEGLIKSKILLEA-----KVK--ELTERLE--EEEEMNSELVAKKRN 946
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.312 0.131 0.400
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,952,882
Number of Sequences: 37866
Number of extensions: 611876
Number of successful extensions: 1280
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 41
Number of HSP's that attempted gapping in prelim test: 1268
Number of HSP's gapped (non-prelim): 49
length of query: 300
length of database: 18,247,518
effective HSP length: 102
effective length of query: 198
effective length of database: 14,385,186
effective search space: 2848266828
effective search space used: 2848266828
T: 11
A: 40
X1: 16 ( 7.2 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.