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Search of human proteins with 33342278
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33342278 TraB domain containing [Homo sapiens]
(376 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33342278 TraB domain containing [Homo sapiens] 745 0.0
gi|9910266 kinesin family member 15 [Homo sapiens] 38 0.017
gi|192807312 SWI/SNF-related matrix-associated actin-dependent r... 31 1.6
gi|21071056 SWI/SNF-related matrix-associated actin-dependent re... 31 1.6
gi|112380628 lysosomal-associated membrane protein 1 [Homo sapiens] 31 2.1
gi|24429588 zinc finger protein 532 [Homo sapiens] 31 2.1
gi|192807320 SWI/SNF-related matrix-associated actin-dependent r... 30 2.7
gi|192807318 SWI/SNF-related matrix-associated actin-dependent r... 30 2.7
gi|4758844 nucleoporin 155kDa isoform 2 [Homo sapiens] 30 4.6
gi|24430149 nucleoporin 155kDa isoform 1 [Homo sapiens] 30 4.6
gi|33946313 ninein isoform 4 [Homo sapiens] 30 4.6
gi|33946321 ninein isoform 5 [Homo sapiens] 30 4.6
gi|148536871 ninein isoform 1 [Homo sapiens] 30 4.6
gi|148536869 ninein isoform 2 [Homo sapiens] 30 4.6
gi|47132529 suppression of tumorigenicity 5 isoform 1 [Homo sapi... 30 4.6
gi|47132532 suppression of tumorigenicity 5 isoform 1 [Homo sapi... 30 4.6
gi|21264614 suppression of tumorigenicity 5 isoform 2 [Homo sapi... 30 4.6
gi|192807316 SWI/SNF-related matrix-associated actin-dependent r... 29 6.0
gi|192807314 SWI/SNF-related matrix-associated actin-dependent r... 29 6.0
gi|38045956 zinc finger protein 19 [Homo sapiens] 29 7.9
>gi|33342278 TraB domain containing [Homo sapiens]
Length = 376
Score = 745 bits (1924), Expect = 0.0
Identities = 376/376 (100%), Positives = 376/376 (100%)
Query: 1 MDGEEQQPPHEANVEPVVPSEASEPVPRVLSGDPQNLSDVDAFNLLLEMKLKRRRQRPNL 60
MDGEEQQPPHEANVEPVVPSEASEPVPRVLSGDPQNLSDVDAFNLLLEMKLKRRRQRPNL
Sbjct: 1 MDGEEQQPPHEANVEPVVPSEASEPVPRVLSGDPQNLSDVDAFNLLLEMKLKRRRQRPNL 60
Query: 61 PRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDES 120
PRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDES
Sbjct: 61 PRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMDES 120
Query: 121 TLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASK 180
TLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASK
Sbjct: 121 TLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASK 180
Query: 181 VPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQM 240
VPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQM
Sbjct: 181 VPFCKFHLGDRPIPVTFKRAIAALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQM 240
Query: 241 MAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGH 300
MAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGH
Sbjct: 241 MAEMIGEFPDLHRTIVSERDVYLTYMLRQAARRLELPRASDAEPRKCVPSVVVGVVGMGH 300
Query: 301 VPGIEKNWSTDLNIQEIMTVPPPSVSGRVSRLAVKAAFFGLLGYSLYWMGRRTASLVLSL 360
VPGIEKNWSTDLNIQEIMTVPPPSVSGRVSRLAVKAAFFGLLGYSLYWMGRRTASLVLSL
Sbjct: 301 VPGIEKNWSTDLNIQEIMTVPPPSVSGRVSRLAVKAAFFGLLGYSLYWMGRRTASLVLSL 360
Query: 361 PAAQYCLQRVTEARHK 376
PAAQYCLQRVTEARHK
Sbjct: 361 PAAQYCLQRVTEARHK 376
>gi|9910266 kinesin family member 15 [Homo sapiens]
Length = 1388
Score = 37.7 bits (86), Expect = 0.017
Identities = 21/78 (26%), Positives = 43/78 (55%), Gaps = 4/78 (5%)
Query: 88 KRDVVKTIREVQPDVVVVELCQYRVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGL 147
K + + T+++ D+ C+Y +++ +ES +L + QE+ + L++ +R L +
Sbjct: 1001 KTETIDTLKQELKDIN----CKYNSALVDREESRVLIKKQEVDILDLKETLRLRILSEDI 1056
Query: 148 MQMLLLKVSAHITEQLGM 165
+ +L + AH TEQL M
Sbjct: 1057 ERDMLCEDLAHATEQLNM 1074
>gi|192807312 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 31.2 bits (69), Expect = 1.6
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 9 PHEANVEPVV---PSEASEPVPRVLSGDPQNLSDVDAFNLLLEMKLKRRRQRPNLPRTVT 65
P A V P + P + + VP + + + F+L + M L RRR+ P+
Sbjct: 1276 PPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKP 1335
Query: 66 QLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMD---ESTL 122
+L+ ED +++ DD+ +V + E + + + ++R + D E
Sbjct: 1336 RLMEEDELPSWII-----KDDA--EVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQW 1388
Query: 123 LREAQELSLEKLQQAVRQ 140
L+ +E +LE++++ VRQ
Sbjct: 1389 LKAIEEGTLEEIEEEVRQ 1406
>gi|21071056 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform B [Homo sapiens]
Length = 1647
Score = 31.2 bits (69), Expect = 1.6
Identities = 32/138 (23%), Positives = 63/138 (45%), Gaps = 13/138 (9%)
Query: 9 PHEANVEPVV---PSEASEPVPRVLSGDPQNLSDVDAFNLLLEMKLKRRRQRPNLPRTVT 65
P A V P + P + + VP + + + F+L + M L RRR+ P+
Sbjct: 1276 PPPAGVNPDLEEPPLKEEDEVPDDETVNQMIARHEEEFDLFMRMDLDRRREEARNPKRKP 1335
Query: 66 QLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVVVVELCQYRVSMLKMD---ESTL 122
+L+ ED +++ DD+ +V + E + + + ++R + D E
Sbjct: 1336 RLMEEDELPSWII-----KDDA--EVERLTCEEEEEKMFGRGSRHRKEVDYSDSLTEKQW 1388
Query: 123 LREAQELSLEKLQQAVRQ 140
L+ +E +LE++++ VRQ
Sbjct: 1389 LKAIEEGTLEEIEEEVRQ 1406
>gi|112380628 lysosomal-associated membrane protein 1 [Homo sapiens]
Length = 417
Score = 30.8 bits (68), Expect = 2.1
Identities = 17/48 (35%), Positives = 22/48 (45%)
Query: 5 EQQPPHEANVEPVVPSEASEPVPRVLSGDPQNLSDVDAFNLLLEMKLK 52
EQ P P PS + PVP+ S D N+S + LL M L+
Sbjct: 192 EQDRPSPTTAPPAPPSPSPSPVPKSPSVDKYNVSGTNGTCLLASMGLQ 239
>gi|24429588 zinc finger protein 532 [Homo sapiens]
Length = 1301
Score = 30.8 bits (68), Expect = 2.1
Identities = 24/101 (23%), Positives = 44/101 (43%), Gaps = 16/101 (15%)
Query: 15 EPVVPSEASEPVPRVLSGDPQNLSDVDAFNLLLEMKLKRRRQRPNLPRTVTQLVAEDGS- 73
EPV S S P+P+ ++ P+ L++ K ++P+ PR+++ + GS
Sbjct: 289 EPVANSRESSPLPKEVNDSPRAADKSPESQNLIDGTKKPSLKQPDSPRSISSENSSKGSP 348
Query: 74 -------------RVYVVGTAHFSDDSKRDVVKTIREVQPD 101
R+ + T+ S + KR V + + EV D
Sbjct: 349 SSPAGSTPAIPKVRIKTIKTS--SGEIKRTVTRVLPEVDLD 387
>gi|192807320 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform F [Homo sapiens]
Length = 1613
Score = 30.4 bits (67), Expect = 2.7
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 41 DAFNLLLEMKLKRRRQRPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQP 100
+ F+L + M L RRR+ P+ +L+ ED +++ DD+ +V + E +
Sbjct: 1278 EEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWII-----KDDA--EVERLTCEEEE 1330
Query: 101 DVVVVELCQYRVSMLKMD---ESTLLREAQELSLEKLQQAVRQ 140
+ + ++R + D E L+ +E +LE++++ VRQ
Sbjct: 1331 EKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQ 1373
>gi|192807318 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform E [Homo sapiens]
Length = 1614
Score = 30.4 bits (67), Expect = 2.7
Identities = 25/103 (24%), Positives = 51/103 (49%), Gaps = 10/103 (9%)
Query: 41 DAFNLLLEMKLKRRRQRPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQP 100
+ F+L + M L RRR+ P+ +L+ ED +++ DD+ +V + E +
Sbjct: 1278 EEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWII-----KDDA--EVERLTCEEEE 1330
Query: 101 DVVVVELCQYRVSMLKMD---ESTLLREAQELSLEKLQQAVRQ 140
+ + ++R + D E L+ +E +LE++++ VRQ
Sbjct: 1331 EKMFGRGSRHRKEVDYSDSLTEKQWLKAIEEGTLEEIEEEVRQ 1373
>gi|4758844 nucleoporin 155kDa isoform 2 [Homo sapiens]
Length = 1332
Score = 29.6 bits (65), Expect = 4.6
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 6 QQPPHEANVEPVVPSEASEPVPRVLSGDPQNLSDVDAFNLLLEMKLKRRRQRPNL 60
Q+ +++ P PS +P P VLS DP LS+ +A + +M +R + L
Sbjct: 921 QELVNQSKAAPQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDEL 975
>gi|24430149 nucleoporin 155kDa isoform 1 [Homo sapiens]
Length = 1391
Score = 29.6 bits (65), Expect = 4.6
Identities = 17/55 (30%), Positives = 28/55 (50%)
Query: 6 QQPPHEANVEPVVPSEASEPVPRVLSGDPQNLSDVDAFNLLLEMKLKRRRQRPNL 60
Q+ +++ P PS +P P VLS DP LS+ +A + +M +R + L
Sbjct: 980 QELVNQSKAAPQSPSVPKKPGPPVLSSDPNMLSNEEAGHHFEQMLKLSQRSKDEL 1034
>gi|33946313 ninein isoform 4 [Homo sapiens]
Length = 2096
Score = 29.6 bits (65), Expect = 4.6
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 52 KRRRQRPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVV-VVELCQY 110
K +++ L +T L ED +GT + S + +T+++ V +VE +
Sbjct: 1524 KLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKK 1583
Query: 111 RVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLK 154
++S LK+ L E ELS + Q + L L +ML K
Sbjct: 1584 QISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK 1627
>gi|33946321 ninein isoform 5 [Homo sapiens]
Length = 2090
Score = 29.6 bits (65), Expect = 4.6
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 52 KRRRQRPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVV-VVELCQY 110
K +++ L +T L ED +GT + S + +T+++ V +VE +
Sbjct: 1518 KLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKK 1577
Query: 111 RVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLK 154
++S LK+ L E ELS + Q + L L +ML K
Sbjct: 1578 QISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK 1621
>gi|148536871 ninein isoform 1 [Homo sapiens]
Length = 2046
Score = 29.6 bits (65), Expect = 4.6
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 52 KRRRQRPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVV-VVELCQY 110
K +++ L +T L ED +GT + S + +T+++ V +VE +
Sbjct: 1518 KLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKK 1577
Query: 111 RVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLK 154
++S LK+ L E ELS + Q + L L +ML K
Sbjct: 1578 QISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK 1621
>gi|148536869 ninein isoform 2 [Homo sapiens]
Length = 2133
Score = 29.6 bits (65), Expect = 4.6
Identities = 27/104 (25%), Positives = 46/104 (44%), Gaps = 1/104 (0%)
Query: 52 KRRRQRPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQPDVV-VVELCQY 110
K +++ L +T L ED +GT + S + +T+++ V +VE +
Sbjct: 1518 KLQQENSILRNEITTLNEEDSISNLKLGTLNGSQEEMWQKTETVKQENAAVQKMVENLKK 1577
Query: 111 RVSMLKMDESTLLREAQELSLEKLQQAVRQNGLMSGLMQMLLLK 154
++S LK+ L E ELS + Q + L L +ML K
Sbjct: 1578 QISELKIKNQQLDLENTELSQKNSQNQEKLQELNQRLTEMLCQK 1621
>gi|47132529 suppression of tumorigenicity 5 isoform 1 [Homo sapiens]
Length = 1137
Score = 29.6 bits (65), Expect = 4.6
Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 36/171 (21%)
Query: 101 DVVVVELCQYRVSMLKMDESTLL----REAQELSLEKLQQAVRQ-------------NGL 143
+ ++V L R DE TLL + A E +LE+ + + Q NGL
Sbjct: 966 EALMVNLGSDRFIRQMDDEDTLLPRKLQAALEQALERKNELISQDSDSDSDDECNTLNGL 1025
Query: 144 MSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAA 203
+S + ++ H + L + GE AF+ + F++++A+
Sbjct: 1026 VSEVFIRFFVETVGHYSLFLTQSEKGE--RAFQREA-----------------FRKSVAS 1066
Query: 204 LSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRT 254
S + + + + I ++ +C+ K L EQ + + + E PD ++
Sbjct: 1067 KSIRRFLEVFMESQMFAGFIQDRELRKCRAKGLFEQRVEQYLEELPDTEQS 1117
>gi|47132532 suppression of tumorigenicity 5 isoform 1 [Homo sapiens]
Length = 1137
Score = 29.6 bits (65), Expect = 4.6
Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 36/171 (21%)
Query: 101 DVVVVELCQYRVSMLKMDESTLL----REAQELSLEKLQQAVRQ-------------NGL 143
+ ++V L R DE TLL + A E +LE+ + + Q NGL
Sbjct: 966 EALMVNLGSDRFIRQMDDEDTLLPRKLQAALEQALERKNELISQDSDSDSDDECNTLNGL 1025
Query: 144 MSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAA 203
+S + ++ H + L + GE AF+ + F++++A+
Sbjct: 1026 VSEVFIRFFVETVGHYSLFLTQSEKGE--RAFQREA-----------------FRKSVAS 1066
Query: 204 LSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRT 254
S + + + + I ++ +C+ K L EQ + + + E PD ++
Sbjct: 1067 KSIRRFLEVFMESQMFAGFIQDRELRKCRAKGLFEQRVEQYLEELPDTEQS 1117
>gi|21264614 suppression of tumorigenicity 5 isoform 2 [Homo
sapiens]
Length = 717
Score = 29.6 bits (65), Expect = 4.6
Identities = 35/171 (20%), Positives = 69/171 (40%), Gaps = 36/171 (21%)
Query: 101 DVVVVELCQYRVSMLKMDESTLL----REAQELSLEKLQQAVRQ-------------NGL 143
+ ++V L R DE TLL + A E +LE+ + + Q NGL
Sbjct: 546 EALMVNLGSDRFIRQMDDEDTLLPRKLQAALEQALERKNELISQDSDSDSDDECNTLNGL 605
Query: 144 MSGLMQMLLLKVSAHITEQLGMAPGGEFREAFKEASKVPFCKFHLGDRPIPVTFKRAIAA 203
+S + ++ H + L + GE AF+ + F++++A+
Sbjct: 606 VSEVFIRFFVETVGHYSLFLTQSEKGE--RAFQREA-----------------FRKSVAS 646
Query: 204 LSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRT 254
S + + + + I ++ +C+ K L EQ + + + E PD ++
Sbjct: 647 KSIRRFLEVFMESQMFAGFIQDRELRKCRAKGLFEQRVEQYLEELPDTEQS 697
>gi|192807316 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform D [Homo sapiens]
Length = 1616
Score = 29.3 bits (64), Expect = 6.0
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 41 DAFNLLLEMKLKRRRQRPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQP 100
+ F+L + M L RRR+ P+ +L+ ED +++ DD+ +V + E +
Sbjct: 1278 EEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWII-----KDDA--EVERLTCEEEE 1330
Query: 101 DVVVVELCQYRVSMLKMDEST------LLREAQELSLEKLQQAVRQ 140
+ + ++R + D T L+ +E +LE++++ VRQ
Sbjct: 1331 EKMFGRGSRHRKEVDYSDSLTEKQWLKTLKAIEEGTLEEIEEEVRQ 1376
>gi|192807314 SWI/SNF-related matrix-associated actin-dependent
regulator of chromatin a4 isoform C [Homo sapiens]
Length = 1617
Score = 29.3 bits (64), Expect = 6.0
Identities = 25/106 (23%), Positives = 51/106 (48%), Gaps = 13/106 (12%)
Query: 41 DAFNLLLEMKLKRRRQRPNLPRTVTQLVAEDGSRVYVVGTAHFSDDSKRDVVKTIREVQP 100
+ F+L + M L RRR+ P+ +L+ ED +++ DD+ +V + E +
Sbjct: 1278 EEFDLFMRMDLDRRREEARNPKRKPRLMEEDELPSWII-----KDDA--EVERLTCEEEE 1330
Query: 101 DVVVVELCQYRVSMLKMDEST------LLREAQELSLEKLQQAVRQ 140
+ + ++R + D T L+ +E +LE++++ VRQ
Sbjct: 1331 EKMFGRGSRHRKEVDYSDSLTEKQWLKTLKAIEEGTLEEIEEEVRQ 1376
>gi|38045956 zinc finger protein 19 [Homo sapiens]
Length = 458
Score = 28.9 bits (63), Expect = 7.9
Identities = 22/91 (24%), Positives = 40/91 (43%), Gaps = 8/91 (8%)
Query: 202 AALSFWQKVRLAWGLCFLSDPISKDDVERCKQKDLLEQMMAEMIGEFPDLHRTIVSERDV 261
A +S ++ +AWGL DP ++ CK + I L + I ERD
Sbjct: 61 ALISLLERGDMAWGLEAQDDPPAERTKNVCKD-------VETNIDSESTLIQGISEERDG 113
Query: 262 YLTY-MLRQAARRLELPRASDAEPRKCVPSV 291
+++ L+ +R + P + E + +P+V
Sbjct: 114 MMSHGQLKSVPQRTDFPETRNVEKHQDIPTV 144
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.320 0.135 0.394
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 14,224,348
Number of Sequences: 37866
Number of extensions: 611103
Number of successful extensions: 1739
Number of sequences better than 10.0: 20
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 14
Number of HSP's that attempted gapping in prelim test: 1727
Number of HSP's gapped (non-prelim): 26
length of query: 376
length of database: 18,247,518
effective HSP length: 104
effective length of query: 272
effective length of database: 14,309,454
effective search space: 3892171488
effective search space used: 3892171488
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 63 (28.9 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.