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Search of human proteins with 33300633
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|33300633 cleavage and polyadenylation specific factor 3-like
[Homo sapiens]
(600 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|33300633 cleavage and polyadenylation specific factor 3-like ... 1217 0.0
gi|7706427 cleavage and polyadenylation specific factor 3, 73kDa... 339 4e-93
gi|34101288 cleavage and polyadenylation specific factor 2 [Homo... 134 2e-31
gi|223555970 integrator complex subunit 9 isoform 2 [Homo sapiens] 74 5e-13
gi|223555968 integrator complex subunit 9 isoform 1 [Homo sapiens] 72 1e-12
gi|76496497 artemis protein isoform a [Homo sapiens] 33 0.98
gi|145553959 elaC homolog 2 [Homo sapiens] 33 0.98
gi|34452173 integrin alpha X precursor [Homo sapiens] 32 2.2
gi|91206406 hypothetical protein LOC642265 [Homo sapiens] 30 4.9
gi|153791826 hypothetical protein LOC26165 [Homo sapiens] 30 4.9
gi|53729363 leucine rich repeat and sterile alpha motif containi... 30 4.9
gi|53729361 leucine rich repeat and sterile alpha motif containi... 30 4.9
gi|53729359 leucine rich repeat and sterile alpha motif containi... 30 4.9
gi|133892686 hypothetical protein LOC727830 [Homo sapiens] 30 4.9
gi|146231958 hypothetical protein LOC647060 [Homo sapiens] 30 4.9
gi|165377334 hypothetical protein LOC727905 [Homo sapiens] 30 4.9
gi|223633941 hypothetical protein LOC389730 [Homo sapiens] 30 6.3
>gi|33300633 cleavage and polyadenylation specific factor 3-like
[Homo sapiens]
Length = 600
Score = 1217 bits (3148), Expect = 0.0
Identities = 600/600 (100%), Positives = 600/600 (100%)
Query: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF
Sbjct: 1 MPEIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDF 60
Query: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF
Sbjct: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANF 120
Query: 121 FTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
FTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYN
Sbjct: 121 FTSQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYN 180
Query: 181 MTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVF 240
MTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVF
Sbjct: 181 MTPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVF 240
Query: 241 ALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
ALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF
Sbjct: 241 ALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
Query: 301 EFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVG 360
EFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVG
Sbjct: 301 EFKHIKAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVG 360
Query: 361 HKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKM 420
HKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKM
Sbjct: 361 HKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKM 420
Query: 421 EFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKREMAQGLLPEAKKPRLLH 480
EFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKREMAQGLLPEAKKPRLLH
Sbjct: 421 EFLKQKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKREMAQGLLPEAKKPRLLH 480
Query: 481 GTLIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKD 540
GTLIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKD
Sbjct: 481 GTLIMKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLHDTRKEQETALRVYSHLKSVLKD 540
Query: 541 HCVQHLPDGSVTVESVLLQAAAPSEDPGTKVLLVSWTYQDEELGSFLTSLLKKGLPQAPS 600
HCVQHLPDGSVTVESVLLQAAAPSEDPGTKVLLVSWTYQDEELGSFLTSLLKKGLPQAPS
Sbjct: 541 HCVQHLPDGSVTVESVLLQAAAPSEDPGTKVLLVSWTYQDEELGSFLTSLLKKGLPQAPS 600
>gi|7706427 cleavage and polyadenylation specific factor 3, 73kDa
[Homo sapiens]
Length = 684
Score = 339 bits (870), Expect = 4e-93
Identities = 192/506 (37%), Positives = 289/506 (57%), Gaps = 34/506 (6%)
Query: 3 EIRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLD 62
++ + PLGAGQ+VGRSCI++ G+ +MLDCG+H G P I +D
Sbjct: 11 QLLIRPLGAGQEVGRSCIILEFKGRKIMLDCGIHPGLEGMDALPYIDLIDPAE-----ID 65
Query: 63 CVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFT 122
++ISHFHLDHCGALP+F + + G +MTH T+AI LL DY K++ + + +T
Sbjct: 66 LLLISHFHLDHCGALPWFLQKTSFKGRTFMTHATKAIYRWLLSDYVKVS-NISADDMLYT 124
Query: 123 SQMIKDCMKKVVAVHLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNMT 182
+++ M K+ ++ H+ +V ++ Y+AGHVLGAAMF I++ ++YTGD++
Sbjct: 125 ETDLEESMDKIETINFHEVKEVAG-IKFWCYHAGHVLGAAMFMIEIAGVKLLYTGDFSRQ 183
Query: 183 PDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFAL 242
DRHL AA I +P++LI ESTY T I + + RE F VH+ V RGG+ LIPVFAL
Sbjct: 184 EDRHLMAAEIPNIKPDILIIESTYGTHIHEKREEREARFCNTVHDIVNRGGRGLIPVFAL 243
Query: 243 GRAQELCILLETFWERMN--LKVPIYFSTGLTEKANHYYKLFIPWTNQKIRKTFVQRNMF 300
GRAQEL ++L+ +W+ +PIY+++ L +K Y+ ++ N KIRK N F
Sbjct: 244 GRAQELLLILDEYWQNHPELHDIPIYYASSLAKKCMAVYQTYVNAMNDKIRKQININNPF 303
Query: 301 EFKHI---KAFDRAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQG 357
FKHI K+ D D+ GP VV A+PGM+ +G S ++F W +++N VI+ GYCV+G
Sbjct: 304 VFKHISNLKSMDH--FDDIGPSVVMASPGMMQSGLSRELFESWCTDKRNGVIIAGYCVEG 361
Query: 358 TVGHKILSGQRKLEMEGRQVLEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEA 417
T+ I+S ++ Q L +KM V+Y+SFSAH D + + + +P V+LVHGE
Sbjct: 362 TLAKHIMSEPEEITTMSGQKLPLKMSVDYISFSAHTDYQQTSEFIRALKPPHVILVHGEQ 421
Query: 418 KKMEFLKQKI------EQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKREMAQGLLP 471
+M LK + E+ + + P N E VTL K G L
Sbjct: 422 NEMARLKAALIREYEDNDEVHIEVHNPRNTEAVTLNFRGE----------KLAKVMGFLA 471
Query: 472 EAKKP---RLLHGTLIMKDSNFRLVS 494
+ KKP + + G L+ ++ N+ ++S
Sbjct: 472 D-KKPEQGQRVSGILVKRNFNYHILS 496
>gi|34101288 cleavage and polyadenylation specific factor 2 [Homo
sapiens]
Length = 782
Score = 134 bits (337), Expect = 2e-31
Identities = 110/401 (27%), Positives = 181/401 (45%), Gaps = 26/401 (6%)
Query: 4 IRVTPLGAGQDVGRSCILVSIAGKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDC 63
I++T L Q+ C L+ + +LDCG F+ D I + +D
Sbjct: 5 IKLTTLSGVQEESALCYLLQVDEFRFLLDCGWDEHFSMD-------IIDSLRKHVHQIDA 57
Query: 64 VIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTS 123
V++SH H GALPY +G + IY T P + + + D + + + + FT
Sbjct: 58 VLLSHPDPLHLGALPYAVGKLGLNCAIYATIPVYKMGQMFMYDLYQSRHNTE-DFTLFTL 116
Query: 124 QMIKDCMKKVVAVHLHQTVQVDDE---LEIKAYYAGHVLGAAMFQI-KVGSESVVYTGDY 179
+ K+ + Q V + + L I AGH++G +++I K G E +VY D+
Sbjct: 117 DDVDAAFDKIQQLKFSQIVNLKGKGHGLSITPLPAGHMIGGTIWKIVKDGEEEIVYAVDF 176
Query: 180 NMTPDRHLGAAWIDKC-RPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIP 238
N + HL ++ RP+LLIT+S AT ++ ++ R+ L V ET+ G VLI
Sbjct: 177 NHKREIHLNGCSLEMLSRPSLLITDSFNATYVQPRRKQRDEQLLTNVLETLRGDGNVLIA 236
Query: 239 VFALGRAQELCILLETFWERMNLKVPIYFSTGLTEKANH----YYKLFIPWTNQKIRKTF 294
V GR EL LL+ W + + +Y S L ++ + K + W + K+ + F
Sbjct: 237 VDTAGRVLELAQLLDQIWRTKDAGLGVY-SLALLNNVSYNVVEFSKSQVEWMSDKLMRCF 295
Query: 295 VQR--NMFEFKHIKAFD--RAFADNPGPMVVFATPGMLHAGQSLQIFRKWAGNEKNMVIM 350
+ N F+F+H+ A P P VV A+ L G S +F +W + KN +I+
Sbjct: 296 EDKRNNPFQFRHLSLCHGLSDLARVPSPKVVLASQPDLECGFSRDLFIQWCQDPKNSIIL 355
Query: 351 PGYCVQGTVGHKILSGQ----RKLEMEGRQVLEVKMQVEYM 387
GT+ ++ ++E+ R LE K EY+
Sbjct: 356 TYRTTPGTLARFLIDNPSEKITEIELRKRVKLEGKELEEYL 396
Score = 37.7 bits (86), Expect = 0.030
Identities = 18/69 (26%), Positives = 36/69 (52%), Gaps = 2/69 (2%)
Query: 378 LEVKMQVEYMSFSAHADAKGIMQLVGQAEPESVLLVHGEAKKMEFLKQ--KIEQELRVNC 435
+E+K +V Y+ + +D I +++ Q +P +++VHG + + L + + +
Sbjct: 529 IEIKARVTYIDYEGRSDGDSIKKIINQMKPRQLIIVHGPPEASQDLAECCRAFGGKDIKV 588
Query: 436 YMPANGETV 444
YMP ETV
Sbjct: 589 YMPKLHETV 597
>gi|223555970 integrator complex subunit 9 isoform 2 [Homo sapiens]
Length = 637
Score = 73.6 bits (179), Expect = 5e-13
Identities = 87/392 (22%), Positives = 149/392 (38%), Gaps = 66/392 (16%)
Query: 19 CILVSIAGKNVMLDCGMHMGFNDD------------RRFPDFSYITQNGRLT-------D 59
C ++ +MLDCG+ M + P +S N L
Sbjct: 14 CNVLKFKSTTIMLDCGLDMTSTLNFLPLPLVQSPRLSNLPGWSLKDGNAFLDKTELIDLS 73
Query: 60 FLDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDY------------ 107
+D ++IS++H ALPY +E G+ G +Y T PT I +L+E+
Sbjct: 74 TVDVILISNYHC--MMALPYITEHTGFTGTVYATEPTVQIGRLLMEELVNFIERVPKAQS 131
Query: 108 ----------------RKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIK 151
K AV+ +T Q + + K+ V Q +++ +++
Sbjct: 132 ASLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFGAVQVT 191
Query: 152 AYYAGHVLGAAMFQIKVGSESVVYTGDYNM--TPDRHLGAAWIDKCRPNLLITESTYATT 209
+G+ LG++ + I+ E V Y ++ T + + A + K L++T T T
Sbjct: 192 PLSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASL-KNSDVLVLTGLTQIPT 250
Query: 210 IRDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNL-KVPIYFS 268
E F + TV GG VL+P + G +L L + + L VP+YF
Sbjct: 251 ANPDGMVGE--FCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDSAGLSSVPLYFI 308
Query: 269 TGLTEKANHYYKLFIPW-TNQKIRKTFVQRNMF---------EFKHIKAFDRAFA-DNPG 317
+ + + + ++F W + K K ++ F + KH + F+ D
Sbjct: 309 SPVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLKHYPSIHGDFSNDFRQ 368
Query: 318 PMVVFATPGMLHAGQSLQIFRKWAGNEKNMVI 349
P VVF L G + W + N VI
Sbjct: 369 PCVVFTGHPSLRFGDVVHFMELWGKSSLNTVI 400
>gi|223555968 integrator complex subunit 9 isoform 1 [Homo sapiens]
Length = 658
Score = 72.0 bits (175), Expect = 1e-12
Identities = 76/331 (22%), Positives = 132/331 (39%), Gaps = 47/331 (14%)
Query: 61 LDCVIISHFHLDHCGALPYFSEMVGYDGPIYMTHPTQAICPILLEDY------------- 107
+D ++IS++H ALPY +E G+ G +Y T PT I +L+E+
Sbjct: 96 VDVILISNYHC--MMALPYITEHTGFTGTVYATEPTVQIGRLLMEELVNFIERVPKAQSA 153
Query: 108 ---------------RKIAVDKKGEANFFTSQMIKDCMKKVVAVHLHQTVQVDDELEIKA 152
K AV+ +T Q + + K+ V Q +++ +++
Sbjct: 154 SLWKNKDIQRLLPSPLKDAVEVSTWRRCYTMQEVNSALSKIQLVGYSQKIELFGAVQVTP 213
Query: 153 YYAGHVLGAAMFQIKVGSESVVYTGDYNM--TPDRHLGAAWIDKCRPNLLITESTYATTI 210
+G+ LG++ + I+ E V Y ++ T + + A + K L++T T T
Sbjct: 214 LSSGYALGSSNWIIQSHYEKVSYVSGSSLLTTHPQPMDQASL-KNSDVLVLTGLTQIPTA 272
Query: 211 RDSKRCRERDFLKKVHETVERGGKVLIPVFALGRAQELCILLETFWERMNL-KVPIYFST 269
E F + TV GG VL+P + G +L L + + L VP+YF +
Sbjct: 273 NPDGMVGE--FCSNLALTVRNGGNVLVPCYPSGVIYDLLECLYQYIDSAGLSSVPLYFIS 330
Query: 270 GLTEKANHYYKLFIPW-TNQKIRKTFVQRNMF---------EFKHIKAFDRAFA-DNPGP 318
+ + + ++F W + K K ++ F + KH + F+ D P
Sbjct: 331 PVANSSLEFSQIFAEWLCHNKQSKVYLPEPPFPHAELIQTNKLKHYPSIHGDFSNDFRQP 390
Query: 319 MVVFATPGMLHAGQSLQIFRKWAGNEKNMVI 349
VVF L G + W + N VI
Sbjct: 391 CVVFTGHPSLRFGDVVHFMELWGKSSLNTVI 421
>gi|76496497 artemis protein isoform a [Homo sapiens]
Length = 692
Score = 32.7 bits (73), Expect = 0.98
Identities = 16/69 (23%), Positives = 34/69 (49%), Gaps = 9/69 (13%)
Query: 122 TSQMIKDCMKKVVAVHLHQTVQVD---------DELEIKAYYAGHVLGAAMFQIKVGSES 172
TS + K+++++ + Q+ +E+ + AGH G+ MF + + +
Sbjct: 71 TSPKYRFWKKRIISIEIETPTQISLVDEASGEKEEIVVTLLPAGHCPGSVMFLFQGNNGT 130
Query: 173 VVYTGDYNM 181
V+YTGD+ +
Sbjct: 131 VLYTGDFRL 139
>gi|145553959 elaC homolog 2 [Homo sapiens]
Length = 826
Score = 32.7 bits (73), Expect = 0.98
Identities = 64/273 (23%), Positives = 104/273 (38%), Gaps = 46/273 (16%)
Query: 18 SCILVSIA-GKNVMLDCGMHMGFNDDRRFPDFSYITQNGRLTDFLDCVIISHFHLDHCGA 76
S LV+I+ +++LDCG R + D Q R+ L V +SH H DH
Sbjct: 500 SATLVNISPDTSLLLDCGEGTFGQLCRHYGD-----QVDRVLGTLAAVFVSHLHADHHTG 554
Query: 77 LPYF-----SEMVGYDGPIYMTHPTQAICPILLEDYRKIAVDKKGEANFFTSQMIKDCMK 131
LP + P+ HP + P L+ + + ++ E S + C++
Sbjct: 555 LPSILLQRERALASLGKPL---HPLLVVAPNQLKAWLQQYHNQCQEVLHHISMIPAKCLQ 611
Query: 132 KVVAV----------HLHQTVQVDDELEIKAYYAGHVLGAAMFQIKVGSESVVYTGDYNM 181
+ + L +T +++ + H G A+ + VVY+GD
Sbjct: 612 EGAEISSPAVERLISSLLRTCDLEEFQTCLVRHCKHAFGCAL--VHTSGWKVVYSGD--T 667
Query: 182 TPDRHLGAAWIDKCRPNLLITESTYATTIRDSKRCRERDFLKKVHETVERGGKVLIPVFA 241
P L D LLI E+T + E + ++K H T + V +
Sbjct: 668 MPCEALVRMGKD---ATLLIHEATLEDGL-------EEEAVEKTHSTTSQAISVGM---- 713
Query: 242 LGRAQELCILLETFWERMNLKVPIYFSTGLTEK 274
R I+L F +R KVP+ FS +EK
Sbjct: 714 --RMNAEFIMLNHFSQRY-AKVPL-FSPNFSEK 742
>gi|34452173 integrin alpha X precursor [Homo sapiens]
Length = 1163
Score = 31.6 bits (70), Expect = 2.2
Identities = 33/124 (26%), Positives = 57/124 (45%), Gaps = 9/124 (7%)
Query: 425 QKIEQELRVNCYMPANGETVTLPTSPSIPVGISLGLLKREMAQGLLPEAKKPRLLHGTLI 484
Q + Q+ V+ + A G+ + L T P + VG+S+ + E+ + E ++ + TL+
Sbjct: 592 QDLTQDGLVDLAVGARGQVLLLRTRPVLWVGVSMQFIPAEIPRSAF-ECREQVVSEQTLV 650
Query: 485 MKDSNFRLVSSEQALKELGLAEHQLRFTCRVHLHDTRKE-----QETALRVYSHLKSV-L 538
SN L +++ LG + Q T + L R QET R S ++ + L
Sbjct: 651 --QSNICLYIDKRSKNLLGSRDLQSSVTLDLALDPGRLSPRATFQETKNRSLSRVRVLGL 708
Query: 539 KDHC 542
K HC
Sbjct: 709 KAHC 712
>gi|91206406 hypothetical protein LOC642265 [Homo sapiens]
Length = 1347
Score = 30.4 bits (67), Expect = 4.9
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 389 FSAHADAKGIMQLVGQAEPESVLLVHG-EAKKMEFLKQKIEQELRVNCYMPAN 440
+S+ A+A+G+M VGQ E + L H A K+ KQK + + C P N
Sbjct: 1200 YSSSAEAQGLMTAVGQMLDEKMSLCHARHASKVNQHKQKFQAPV---CGFPCN 1249
>gi|153791826 hypothetical protein LOC26165 [Homo sapiens]
Length = 1347
Score = 30.4 bits (67), Expect = 4.9
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 389 FSAHADAKGIMQLVGQAEPESVLLVHG-EAKKMEFLKQKIEQELRVNCYMPAN 440
+S+ A+A+G+M VGQ E + L H A K+ KQK + + C P N
Sbjct: 1200 YSSSAEAQGLMTAVGQMLDEKMSLCHARHASKVNQHKQKFQAPV---CGFPCN 1249
>gi|53729363 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 30.4 bits (67), Expect = 4.9
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 470 LPEAKKPRLLHGTLIMKDSNFRLVSSEQALKELGLAEHQLRFTC-RVHLHDTRKEQETAL 528
L + + +LL + KD + V EQ+ E GL+EHQ R L + K+ E
Sbjct: 276 LGQREHTQLLQQSSSQKDEILQTVKEEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQ-- 333
Query: 529 RVYSHLKSVLKDH 541
+ S ++ +L+D+
Sbjct: 334 NISSRIQKLLQDN 346
>gi|53729361 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 30.4 bits (67), Expect = 4.9
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 470 LPEAKKPRLLHGTLIMKDSNFRLVSSEQALKELGLAEHQLRFTC-RVHLHDTRKEQETAL 528
L + + +LL + KD + V EQ+ E GL+EHQ R L + K+ E
Sbjct: 276 LGQREHTQLLQQSSSQKDEILQTVKEEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQ-- 333
Query: 529 RVYSHLKSVLKDH 541
+ S ++ +L+D+
Sbjct: 334 NISSRIQKLLQDN 346
>gi|53729359 leucine rich repeat and sterile alpha motif containing
1 [Homo sapiens]
Length = 723
Score = 30.4 bits (67), Expect = 4.9
Identities = 21/73 (28%), Positives = 36/73 (49%), Gaps = 3/73 (4%)
Query: 470 LPEAKKPRLLHGTLIMKDSNFRLVSSEQALKELGLAEHQLRFTC-RVHLHDTRKEQETAL 528
L + + +LL + KD + V EQ+ E GL+EHQ R L + K+ E
Sbjct: 276 LGQREHTQLLQQSSSQKDEILQTVKEEQSRLEQGLSEHQRHLNAERQRLQEQLKQTEQ-- 333
Query: 529 RVYSHLKSVLKDH 541
+ S ++ +L+D+
Sbjct: 334 NISSRIQKLLQDN 346
>gi|133892686 hypothetical protein LOC727830 [Homo sapiens]
Length = 1347
Score = 30.4 bits (67), Expect = 4.9
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 389 FSAHADAKGIMQLVGQAEPESVLLVHG-EAKKMEFLKQKIEQELRVNCYMPAN 440
+S+ A+A+G+M VGQ E + L H A K+ KQK + + C P N
Sbjct: 1200 YSSSAEAQGLMTAVGQMLDEKMSLCHARHASKVNQHKQKFQAPV---CGFPCN 1249
>gi|146231958 hypothetical protein LOC647060 [Homo sapiens]
Length = 1347
Score = 30.4 bits (67), Expect = 4.9
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 389 FSAHADAKGIMQLVGQAEPESVLLVHG-EAKKMEFLKQKIEQELRVNCYMPAN 440
+S+ A+A+G+M VGQ E + L H A K+ KQK + + C P N
Sbjct: 1200 YSSSAEAQGLMTAVGQMLDEKMSLCHARHASKVNQHKQKFQAPV---CGFPCN 1249
>gi|165377334 hypothetical protein LOC727905 [Homo sapiens]
Length = 1347
Score = 30.4 bits (67), Expect = 4.9
Identities = 19/53 (35%), Positives = 28/53 (52%), Gaps = 4/53 (7%)
Query: 389 FSAHADAKGIMQLVGQAEPESVLLVHG-EAKKMEFLKQKIEQELRVNCYMPAN 440
+S+ A+A+G+M VGQ E + L H A K+ KQK + + C P N
Sbjct: 1200 YSSSAEAQGLMTAVGQMLDEKMSLCHARHASKVNQHKQKFQAPV---CGFPCN 1249
>gi|223633941 hypothetical protein LOC389730 [Homo sapiens]
Length = 1343
Score = 30.0 bits (66), Expect = 6.3
Identities = 26/117 (22%), Positives = 51/117 (43%), Gaps = 26/117 (22%)
Query: 325 PGMLHAGQSLQIFRKWAGNEKNMVIMPGYCVQGTVGHKILSGQRKLEMEGRQVLEVKMQV 384
P + H G++++ F +W ++K P ++ + + ++ R +
Sbjct: 1154 PSVSHFGENIKQFFQWIFSKKKSKPAP------------VTAESQKTVKNRSCV------ 1195
Query: 385 EYMSFSAHADAKGIMQLVGQAEPESVLLVHG-EAKKMEFLKQKIEQELRVNCYMPAN 440
+S+ A+A+G+M VGQ + + L H A K+ KQK + + C P N
Sbjct: 1196 ----YSSSAEAQGLMTAVGQMLDKKMSLCHAHHASKVNQHKQKFQAPV---CGFPCN 1245
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.137 0.412
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 23,036,306
Number of Sequences: 37866
Number of extensions: 1021522
Number of successful extensions: 2195
Number of sequences better than 10.0: 17
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 11
Number of HSP's that attempted gapping in prelim test: 2169
Number of HSP's gapped (non-prelim): 27
length of query: 600
length of database: 18,247,518
effective HSP length: 108
effective length of query: 492
effective length of database: 14,157,990
effective search space: 6965731080
effective search space used: 6965731080
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.