Search of human proteins with 124028525

Search of human proteins with 124028525

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|124028525 phenylalanyl-tRNA synthetase, beta subunit [Homo
sapiens]
         (589 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|124028525 phenylalanyl-tRNA synthetase, beta subunit [Homo sa...  1175   0.0  
gi|24308207 leucine rich repeat containing 47 [Homo sapiens]          100   4e-21
gi|148839305 structural maintenance of chromosomes flexible hing...    34   0.33 
gi|23510413 sorting nexin 26 [Homo sapiens]                            32   1.3  
gi|134288884 glutamyl-tRNA synthetase 2 [Homo sapiens]                 32   1.6  
gi|226958663 nucleoporin 210kDa-like isoform 2 [Homo sapiens]          31   3.6  
gi|117414168 nucleoporin 210kDa-like isoform 1 [Homo sapiens]          31   3.6  
gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [H...    30   6.2  
gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [H...    30   6.2  

>gi|124028525 phenylalanyl-tRNA synthetase, beta subunit [Homo
           sapiens]
          Length = 589

 Score = 1175 bits (3040), Expect = 0.0
 Identities = 589/589 (100%), Positives = 589/589 (100%)

Query: 1   MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV 60
           MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV
Sbjct: 1   MPTVSVKRDLLFQALGRTYTDEEFDELCFEFGLELDEITSEKEIISKEQGNVKAAGASDV 60

Query: 61  VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPF 120
           VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPF
Sbjct: 61  VLYKIDVPANRYDLLCLEGLVRGLQVFKERIKAPVYKRVMPDGKIQKLIITEETAKIRPF 120

Query: 121 AVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSD 180
           AVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSD
Sbjct: 121 AVAAVLRNIKFTKDRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLSGPFTYTAKRPSD 180

Query: 181 IKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGD 240
           IKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGD
Sbjct: 181 IKFKPLNKTKEYTACELMNIYKTDNHLKHYLHIIENKPLYPVIYDSNGVVLSMPPIINGD 240

Query: 241 HSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFP 300
           HSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFP
Sbjct: 241 HSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFPNGKSHTFP 300

Query: 301 ELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIH 360
           ELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIH
Sbjct: 301 ELAYRKEMVRADLINKKVGIRETPENLAKLLTRMYLKSEVIGDGNQIEIEIPPTRADIIH 360

Query: 361 ACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQ 420
           ACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQ
Sbjct: 361 ACDIVEDAAIAYGYNNIQMTLPKTYTIANQFPLNKLTELLRHDMAAAGFTEALTFALCSQ 420

Query: 421 EDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDI 480
           EDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDI
Sbjct: 421 EDIADKLGVDISATKAVHISNPKTAEFQVARTTLLPGLLKTIAANRKMPLPLKLFEISDI 480

Query: 481 VIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEG 540
           VIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEG
Sbjct: 481 VIKDSNTDVGAKNYRHLCAVYYNKNPGFEIIHGLLDRIMQLLDVPPGEDKGGYVIKASEG 540

Query: 541 PAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL 589
           PAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL
Sbjct: 541 PAFFPGRCAEIFARGQSVGKLGVLHPDVITKFELTMPCSSLEINVGPFL 589


>gi|24308207 leucine rich repeat containing 47 [Homo sapiens]
          Length = 583

 Score =  100 bits (249), Expect = 4e-21
 Identities = 58/194 (29%), Positives = 100/194 (51%), Gaps = 18/194 (9%)

Query: 110 ITEETAKIRPFAVAAVLRNIKFTK-DRYDSFIELQEKLHQNICRKRALVAIGTHDLDTLS 168
           ++ E   +RP+ V AV+R +     +    F+  Q KLH+++C KR    + TH+L  + 
Sbjct: 325 VSPEVRDVRPYIVGAVVRGMDLQPGNALKRFLTSQTKLHEDLCEKRTAATLATHELRAVK 384

Query: 169 GPFTYTAKRPSDIKFKPLNKTKEYTACELMNIYKTD-------------NHLKHYLHIIE 215
           GP  Y A+ P D+K  PL + KE  A EL+   + +             + L  YLH+++
Sbjct: 385 GPLLYCARPPQDLKIVPLGR-KEAKAKELVRQLQLEAEEQRKQKKRQSVSGLHRYLHLLD 443

Query: 216 NKPLYPVIYDSNGVVLSMPPIINGDHSRITVNTRNIFIECT-GTDFTKAKIVLDIIVTMF 274
               YP + D++G V+S PPI N + +++   T ++F+E T  T     K V+D ++   
Sbjct: 444 GNENYPCLVDADGDVISFPPITNSEKTKVKKTTSDLFLEVTSATSLQICKDVMDALILKM 503

Query: 275 SEYCENQFTVEAAE 288
           +E    ++T+E  E
Sbjct: 504 AEM--KKYTLENKE 515


>gi|148839305 structural maintenance of chromosomes flexible hinge
            domain containing 1 [Homo sapiens]
          Length = 2005

 Score = 34.3 bits (77), Expect = 0.33
 Identities = 25/93 (26%), Positives = 48/93 (51%), Gaps = 8/93 (8%)

Query: 34   ELDEITSEKEIISKEQGNVKAAGASDVVLYKIDVPANRYDLLCLEGL----VRGLQVFKE 89
            E D IT++ ++I     + K +GA ++ +Y +D  ++   +L    +    ++  Q  K 
Sbjct: 956  ESDNITAQPKLIV----HCKFSGAPNLPVYVVDCSSSGTSILTGSAIQVQNIKKDQTLKA 1011

Query: 90   RIKAPVYKRVMPDGKIQKLIITEETAKIRPFAV 122
            RI+ P  K V P  K  KL+ +   A+++ F+V
Sbjct: 1012 RIEIPSCKDVAPVEKTIKLLPSSHVARLQIFSV 1044


>gi|23510413 sorting nexin 26 [Homo sapiens]
          Length = 1126

 Score = 32.3 bits (72), Expect = 1.3
 Identities = 14/42 (33%), Positives = 21/42 (50%)

Query: 518 IMQLLDVPPGEDKGGYVIKASEGPAFFPGRCAEIFARGQSVG 559
           I+ ++D+PP ED+  +  K      FFP  C E+F      G
Sbjct: 212 IVSVIDMPPTEDRSWWRGKRGFQVGFFPSECVELFTERPGPG 253


>gi|134288884 glutamyl-tRNA synthetase 2 [Homo sapiens]
          Length = 523

 Score = 32.0 bits (71), Expect = 1.6
 Identities = 24/114 (21%), Positives = 50/114 (43%), Gaps = 17/114 (14%)

Query: 233 MPPIINGDHSRITVNTRNIFIECTGTDFTKAKIVLDIIVTMFSEYCENQFTVEAAEVVFP 292
           +P ++N D S+++    ++F+E    D      +LDII    S + ENQ           
Sbjct: 274 LPLLLNRDGSKLSKRQGDVFLEHFAADGFLPDSLLDIITNCGSGFAENQM---------- 323

Query: 293 NGKSHTFPELAYRKEMVRADLINKKVGIRETPE----NLAKLLTRMYLKSEVIG 342
                T PEL  +  + +    +  + + + PE    +L +L++    + +++G
Sbjct: 324 ---GRTLPELITQFNLTQVTCHSALLDLEKLPEFNRLHLQRLVSNESQRRQLVG 374


>gi|226958663 nucleoporin 210kDa-like isoform 2 [Homo sapiens]
          Length = 1736

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 27  LCFEFGLELDEITSEKEIISKEQ--GNVKAAGASDVVLYKIDVPANRYDLLCLEGLVRGL 84
           + FE+ +  D  ++ +E+ SK +     +A  A  + + +++    + D++ + G+  G 
Sbjct: 167 MMFEWSIAQDNESAREELSSKIRILKYSEAEYAPPIYIAEMEKEEKQGDVILVSGIRTGA 226

Query: 85  QVFKERIKAPVYKRV 99
            V K RI  P YK+V
Sbjct: 227 AVVKVRIHEPFYKKV 241


>gi|117414168 nucleoporin 210kDa-like isoform 1 [Homo sapiens]
          Length = 1888

 Score = 30.8 bits (68), Expect = 3.6
 Identities = 19/75 (25%), Positives = 39/75 (52%), Gaps = 2/75 (2%)

Query: 27  LCFEFGLELDEITSEKEIISKEQ--GNVKAAGASDVVLYKIDVPANRYDLLCLEGLVRGL 84
           + FE+ +  D  ++ +E+ SK +     +A  A  + + +++    + D++ + G+  G 
Sbjct: 167 MMFEWSIAQDNESAREELSSKIRILKYSEAEYAPPIYIAEMEKEEKQGDVILVSGIRTGA 226

Query: 85  QVFKERIKAPVYKRV 99
            V K RI  P YK+V
Sbjct: 227 AVVKVRIHEPFYKKV 241


>gi|226442963 jumonji, AT rich interactive domain 1C isoform 2 [Homo
           sapiens]
          Length = 1379

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 377 IQMTLPKTYTIANQF------PLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKL 427
           ++ T PKT+  + +       P  K+T  LR + + A F E+    +CS+ D  DKL
Sbjct: 216 VESTSPKTFLESKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKL 272


>gi|109255243 jumonji, AT rich interactive domain 1C isoform 1 [Homo
           sapiens]
          Length = 1560

 Score = 30.0 bits (66), Expect = 6.2
 Identities = 18/57 (31%), Positives = 29/57 (50%), Gaps = 6/57 (10%)

Query: 377 IQMTLPKTYTIANQF------PLNKLTELLRHDMAAAGFTEALTFALCSQEDIADKL 427
           ++ T PKT+  + +       P  K+T  LR + + A F E+    +CS+ D  DKL
Sbjct: 283 VESTSPKTFLESKEELSHSPEPCTKMTMRLRRNHSNAQFIESYVCRMCSRGDEDDKL 339


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.321    0.138    0.401 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 21,352,580
Number of Sequences: 37866
Number of extensions: 918168
Number of successful extensions: 1871
Number of sequences better than 10.0: 9
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1865
Number of HSP's gapped (non-prelim): 10
length of query: 589
length of database: 18,247,518
effective HSP length: 108
effective length of query: 481
effective length of database: 14,157,990
effective search space: 6809993190
effective search space used: 6809993190
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 65 (29.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.