Guide to the Human Genome
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Name: C19orf20 Sequence: fasta or formatted (290aa) NCBI GI: 123173766
Description:

tubulin polyglutamylase complex subunit 1

Referenced in:

Tubulins and Microtubules

Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine            16.2         47           3
 C cysteine            1.4          4           1
 D aspartate           3.8         11           1
 E glutamate           7.6         22           2
 F phenylalanine       4.1         12           1
 G glycine             8.3         24           2
 H histidine           1.7          5           2
 I isoleucine          1.0          3           1
 K lysine              2.1          6           1
 L leucine            12.8         37           3
 M methionine          1.4          4           1
 N asparagine          1.7          5           3
 P proline             5.9         17           3
 Q glutamine           4.5         13           3
 R arginine           11.0         32           2
 S serine              5.2         15           1
 T threonine           2.4          7           1
 V valine              7.6         22           2
 W tryptophan          0.3          1           1
 Y tyrosine            1.0          3           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   tubulin polyglutamylase complex subunit 1 
PRKAR1A               0.026   cAMP-dependent protein kinase, regulatory subunit al...
PRKAR1A               0.026   cAMP-dependent protein kinase, regulatory subunit al...
PRKAR1A               0.026   cAMP-dependent protein kinase, regulatory subunit alp...
PRKAR1B               0.011   protein kinase, cAMP-dependent, regulatory, type I, ...
AUTS2                 0.011   autism susceptibility candidate 2 isoform 2 
AUTS2                 0.011   autism susceptibility candidate 2 isoform 1 
DGKD                  0.009   diacylglycerol kinase, delta 130kDa isoform 1 
DGKD                  0.009   diacylglycerol kinase, delta 130kDa isoform 2 
SFRS8                 0.007   splicing factor, arginine/serine-rich 8 
RNF40                 0.007   ring finger protein 40 
TYK2                  0.006   tyrosine kinase 2 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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