Search of human proteins with 32171233

Search of human proteins with 32171233

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|32171233 BCDIN3 domain containing [Homo sapiens]
         (292 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|32171233 BCDIN3 domain containing [Homo sapiens]                   609   e-175
gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]                  49   5e-06
gi|16418361 RFT1 homolog [Homo sapiens]                                32   0.66 
gi|61966919 hypothetical protein LOC442444 [Homo sapiens]              30   2.5  
gi|251831113 cytochrome c oxidase subunit III [Homo sapiens]           29   4.3  
gi|216548560 hypothetical protein LOC51093 isoform 1 [Homo sapiens]    28   7.3  
gi|119395729 cathepsin A isoform a precursor [Homo sapiens]            28   7.3  
gi|189163485 cathepsin A isoform b precursor [Homo sapiens]            28   7.3  
gi|27883866 resistance to inhibitors of cholinesterase 8 homolog...    28   7.3  
gi|196123585 cytochrome c oxidase subunit III [Homo sapiens nean...    28   9.5  
gi|145977198 prosaposin-like protein 1 [Homo sapiens]                  28   9.5  

>gi|32171233 BCDIN3 domain containing [Homo sapiens]
          Length = 292

 Score =  609 bits (1571), Expect = e-175
 Identities = 292/292 (100%), Positives = 292/292 (100%)

Query: 1   MAVPTELDGGSVKETAAEEESRVLAPGAAPFGNFPHYSRFHPPEQRLRLLPPELLRQLFP 60
           MAVPTELDGGSVKETAAEEESRVLAPGAAPFGNFPHYSRFHPPEQRLRLLPPELLRQLFP
Sbjct: 1   MAVPTELDGGSVKETAAEEESRVLAPGAAPFGNFPHYSRFHPPEQRLRLLPPELLRQLFP 60

Query: 61  ESPENGPILGLDVGCNSGDLSVALYKHFLSLPDGETCSDASREFRLLCCDIDPVLVKRAE 120
           ESPENGPILGLDVGCNSGDLSVALYKHFLSLPDGETCSDASREFRLLCCDIDPVLVKRAE
Sbjct: 61  ESPENGPILGLDVGCNSGDLSVALYKHFLSLPDGETCSDASREFRLLCCDIDPVLVKRAE 120

Query: 121 KECPFPDALTFITLDFMNQRTRKVLLSSFLSQFGRSVFDIGFCMSITMWIHLNHGDHGLW 180
           KECPFPDALTFITLDFMNQRTRKVLLSSFLSQFGRSVFDIGFCMSITMWIHLNHGDHGLW
Sbjct: 121 KECPFPDALTFITLDFMNQRTRKVLLSSFLSQFGRSVFDIGFCMSITMWIHLNHGDHGLW 180

Query: 181 EFLAHLSSLCHYLLVEPQPWKCYRAAARRLRKLGLHDFDHFHSLAIRGDMPNQIVQILTQ 240
           EFLAHLSSLCHYLLVEPQPWKCYRAAARRLRKLGLHDFDHFHSLAIRGDMPNQIVQILTQ
Sbjct: 181 EFLAHLSSLCHYLLVEPQPWKCYRAAARRLRKLGLHDFDHFHSLAIRGDMPNQIVQILTQ 240

Query: 241 DHGMELICCFGNTSWDRSLLLFRAKQTIETHPIPESLIEKGKEKNRLSFQKQ 292
           DHGMELICCFGNTSWDRSLLLFRAKQTIETHPIPESLIEKGKEKNRLSFQKQ
Sbjct: 241 DHGMELICCFGNTSWDRSLLLFRAKQTIETHPIPESLIEKGKEKNRLSFQKQ 292


>gi|47271406 bin3, bicoid-interacting 3 [Homo sapiens]
          Length = 689

 Score = 48.9 bits (115), Expect = 5e-06
 Identities = 53/226 (23%), Positives = 83/226 (36%), Gaps = 70/226 (30%)

Query: 31  FGNFPHYSRFHPP---EQRLRLLPPELLRQLFPESPENGPILGLDVGCNSGDLSVAL--- 84
           +GN+  Y  +  P   + RLR+L PE  R              LD+GCN G L++++   
Sbjct: 415 YGNYCKYYGYRNPSCEDGRLRVLKPEWFRGRDV----------LDLGCNVGHLTLSIACK 464

Query: 85  ----------------------YKHFLS----LPD-------GETCSDASREFRLLCCDI 111
                                  +H+LS    LP        G    + +   R   C  
Sbjct: 465 WGPSRMVGLDIDSRLIHSARQNIRHYLSEELRLPPQTLEGDPGAEGEEGTTTVRKRSCFP 524

Query: 112 DPVLVKRAEKECP-----------FPDALTFITLDFMNQRTRKVLLSSFLSQFGRSVFDI 160
             +   R     P           FP+ + F+T +++  R   V   +         +D+
Sbjct: 525 ASLTASRGPIAAPQVPLDGADTSVFPNNVVFVTGNYVLDRDDLVEAQT-------PEYDV 577

Query: 161 GFCMSITMWIHLNHGDHGLWEFLAHLSSLCH---YLLVEPQPWKCY 203
             C+S+T W+HLN GD GL      +         L++EPQPW  Y
Sbjct: 578 VLCLSLTKWVHLNWGDEGLKRMFRRIYRHLRPGGILVLEPQPWSSY 623


>gi|16418361 RFT1 homolog [Homo sapiens]
          Length = 541

 Score = 32.0 bits (71), Expect = 0.66
 Identities = 18/62 (29%), Positives = 31/62 (50%)

Query: 136 FMNQRTRKVLLSSFLSQFGRSVFDIGFCMSITMWIHLNHGDHGLWEFLAHLSSLCHYLLV 195
           F+N +  K+  S F   F + +   G    +T    LN GD G+++ + +L SL   L+ 
Sbjct: 234 FINWKEAKLTWSFFKQSFLKQILTEGERYVMTFLNVLNFGDQGVYDIVNNLGSLVARLIF 293

Query: 196 EP 197
           +P
Sbjct: 294 QP 295


>gi|61966919 hypothetical protein LOC442444 [Homo sapiens]
          Length = 1035

 Score = 30.0 bits (66), Expect = 2.5
 Identities = 19/45 (42%), Positives = 21/45 (46%), Gaps = 8/45 (17%)

Query: 26  PGAAPFGNFPHYSRFHPPEQRLRLLPPE----LLRQLFPESPENG 66
           PG  P G F       PPE R+  LPPE     +  L PE PE G
Sbjct: 178 PGKYPCGEFSP----RPPETRVSCLPPEPPKTPVSSLRPEPPETG 218


>gi|251831113 cytochrome c oxidase subunit III [Homo sapiens]
          Length = 261

 Score = 29.3 bits (64), Expect = 4.3
 Identities = 13/35 (37%), Positives = 19/35 (54%)

Query: 192 YLLVEPQPWKCYRAAARRLRKLGLHDFDHFHSLAI 226
           Y +V+P PW    A +  L   GL  + HFHS+ +
Sbjct: 8   YHMVKPSPWPLTGALSALLMTSGLAMWFHFHSMTL 42


>gi|216548560 hypothetical protein LOC51093 isoform 1 [Homo sapiens]
          Length = 475

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 22/57 (38%), Positives = 30/57 (52%), Gaps = 4/57 (7%)

Query: 41  HPPEQRLRLLPPELLRQ--LFP-ESPENGPILGLDVGCNS-GDLSVALYKHFLSLPD 93
           H P   +R + P  L +  L P E+P  G    L  G ++ GDLSVAL +HF   P+
Sbjct: 220 HSPHHVVRWVDPTALCEELLLPLENPCQGRARLLLTGLHACGDLSVALLRHFSCCPE 276


>gi|119395729 cathepsin A isoform a precursor [Homo sapiens]
          Length = 498

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 12/89 (13%)

Query: 14  ETAAEEESRVLAPGAAPFGNFPHYSRFHPPEQRLRLLPPELLRQLFPES---PENGPI-- 68
           E A +++     PG A   +F  YS +      L+    + L   F ES   PEN P+  
Sbjct: 45  EAAPDQDEIQRLPGLAKQPSFRQYSGY------LKGSGSKHLHYWFVESQKDPENSPVVL 98

Query: 69  -LGLDVGCNSGDLSVALYKHFLSLPDGET 96
            L    GC+S D  +  +  FL  PDG T
Sbjct: 99  WLNGGPGCSSLDGLLTEHGPFLVQPDGVT 127


>gi|189163485 cathepsin A isoform b precursor [Homo sapiens]
          Length = 480

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 28/89 (31%), Positives = 39/89 (43%), Gaps = 12/89 (13%)

Query: 14  ETAAEEESRVLAPGAAPFGNFPHYSRFHPPEQRLRLLPPELLRQLFPES---PENGPI-- 68
           E A +++     PG A   +F  YS +      L+    + L   F ES   PEN P+  
Sbjct: 27  EAAPDQDEIQRLPGLAKQPSFRQYSGY------LKGSGSKHLHYWFVESQKDPENSPVVL 80

Query: 69  -LGLDVGCNSGDLSVALYKHFLSLPDGET 96
            L    GC+S D  +  +  FL  PDG T
Sbjct: 81  WLNGGPGCSSLDGLLTEHGPFLVQPDGVT 109


>gi|27883866 resistance to inhibitors of cholinesterase 8 homolog A
           [Homo sapiens]
          Length = 537

 Score = 28.5 bits (62), Expect = 7.3
 Identities = 17/60 (28%), Positives = 32/60 (53%), Gaps = 2/60 (3%)

Query: 220 HFHSLAIRGDMPNQIVQILT--QDHGMELICCFGNTSWDRSLLLFRAKQTIETHPIPESL 277
           H H++ + G++P + + +L   + HG        N    R+LL+F  K+  +TH + ES+
Sbjct: 272 HGHAVNLLGNLPLKCLDVLLTLEPHGDSTEFMGVNMDVIRALLIFLEKRLHKTHRLKESV 331


>gi|196123585 cytochrome c oxidase subunit III [Homo sapiens
           neanderthalensis]
          Length = 260

 Score = 28.1 bits (61), Expect = 9.5
 Identities = 13/35 (37%), Positives = 18/35 (51%)

Query: 192 YLLVEPQPWKCYRAAARRLRKLGLHDFDHFHSLAI 226
           Y +V+P PW    A +  L   GL  + HFHS  +
Sbjct: 8   YHMVKPSPWPLTGALSALLMTSGLAMWFHFHSTTL 42


>gi|145977198 prosaposin-like protein 1 [Homo sapiens]
          Length = 521

 Score = 28.1 bits (61), Expect = 9.5
 Identities = 15/38 (39%), Positives = 20/38 (52%)

Query: 18  EEESRVLAPGAAPFGNFPHYSRFHPPEQRLRLLPPELL 55
           +E+   L PG A       +  F P +Q LRLLPP+ L
Sbjct: 210 QEQCESLGPGLAVLCKNYLFQFFVPADQALRLLPPQEL 247


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.324    0.140    0.447 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 12,578,980
Number of Sequences: 37866
Number of extensions: 591008
Number of successful extensions: 1679
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 6
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 1667
Number of HSP's gapped (non-prelim): 16
length of query: 292
length of database: 18,247,518
effective HSP length: 101
effective length of query: 191
effective length of database: 14,423,052
effective search space: 2754802932
effective search space used: 2754802932
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.5 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.