Search of human proteins with 31542741

Search of human proteins with 31542741

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|31542741 hypothetical protein LOC79843 isoform b [Homo
sapiens]
         (272 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|31542741 hypothetical protein LOC79843 isoform b [Homo sapiens]    563   e-161
gi|170671718 hypothetical protein LOC79843 isoform a [Homo sapiens]   503   e-143
gi|31542760 hypothetical protein LOC220108 [Homo sapiens]             224   8e-59
gi|205830426 solute carrier family 39 (zinc transporter), member...    33   0.27 
gi|149588643 zinc finger protein 283 [Homo sapiens]                    32   0.59 
gi|168693643 decay accelerating factor for complement isoform 2 ...    30   2.9  
gi|193794843 BEN domain containing 2 [Homo sapiens]                    30   2.9  
gi|47578099 selenoprotein N, 1 isoform 1 precursor [Homo sapiens]      29   3.8  
gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo s...    28   6.5  
gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo s...    28   6.5  
gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]      28   8.5  
gi|47825361 non-specific cytotoxic cell receptor protein 1 homol...    28   8.5  

>gi|31542741 hypothetical protein LOC79843 isoform b [Homo sapiens]
          Length = 272

 Score =  563 bits (1450), Expect = e-161
 Identities = 272/272 (100%), Positives = 272/272 (100%)

Query: 1   MDETQGPLAMTVHLLANSGHGSLLQRTLDQLLDCICPEVRLFQVSERASPVKYCEKSHSK 60
           MDETQGPLAMTVHLLANSGHGSLLQRTLDQLLDCICPEVRLFQVSERASPVKYCEKSHSK
Sbjct: 1   MDETQGPLAMTVHLLANSGHGSLLQRTLDQLLDCICPEVRLFQVSERASPVKYCEKSHSK 60

Query: 61  RSRFPGMSVLLFLHESPGEDRLFRVLDSLQHSPWQCYPTQDTRGRLCPYFFANQEFYSLD 120
           RSRFPGMSVLLFLHESPGEDRLFRVLDSLQHSPWQCYPTQDTRGRLCPYFFANQEFYSLD
Sbjct: 61  RSRFPGMSVLLFLHESPGEDRLFRVLDSLQHSPWQCYPTQDTRGRLCPYFFANQEFYSLD 120

Query: 121 SQLPIWGVRQVHCGSEILRVTLYCSFDNYEDAIRLYEMILQREATLQKSNFCFFVLYASK 180
           SQLPIWGVRQVHCGSEILRVTLYCSFDNYEDAIRLYEMILQREATLQKSNFCFFVLYASK
Sbjct: 121 SQLPIWGVRQVHCGSEILRVTLYCSFDNYEDAIRLYEMILQREATLQKSNFCFFVLYASK 180

Query: 181 SFALQLSLKQLPPGMSVDPKESSVLQFKVQEIGQLVPLLPNPCMPISSTRWQTQDYDGNK 240
           SFALQLSLKQLPPGMSVDPKESSVLQFKVQEIGQLVPLLPNPCMPISSTRWQTQDYDGNK
Sbjct: 181 SFALQLSLKQLPPGMSVDPKESSVLQFKVQEIGQLVPLLPNPCMPISSTRWQTQDYDGNK 240

Query: 241 ILLQRWESSSVAQTRVRWCHHSSLRSSPSGFK 272
           ILLQRWESSSVAQTRVRWCHHSSLRSSPSGFK
Sbjct: 241 ILLQRWESSSVAQTRVRWCHHSSLRSSPSGFK 272


>gi|170671718 hypothetical protein LOC79843 isoform a [Homo sapiens]
          Length = 455

 Score =  503 bits (1296), Expect = e-143
 Identities = 244/244 (100%), Positives = 244/244 (100%)

Query: 1   MDETQGPLAMTVHLLANSGHGSLLQRTLDQLLDCICPEVRLFQVSERASPVKYCEKSHSK 60
           MDETQGPLAMTVHLLANSGHGSLLQRTLDQLLDCICPEVRLFQVSERASPVKYCEKSHSK
Sbjct: 1   MDETQGPLAMTVHLLANSGHGSLLQRTLDQLLDCICPEVRLFQVSERASPVKYCEKSHSK 60

Query: 61  RSRFPGMSVLLFLHESPGEDRLFRVLDSLQHSPWQCYPTQDTRGRLCPYFFANQEFYSLD 120
           RSRFPGMSVLLFLHESPGEDRLFRVLDSLQHSPWQCYPTQDTRGRLCPYFFANQEFYSLD
Sbjct: 61  RSRFPGMSVLLFLHESPGEDRLFRVLDSLQHSPWQCYPTQDTRGRLCPYFFANQEFYSLD 120

Query: 121 SQLPIWGVRQVHCGSEILRVTLYCSFDNYEDAIRLYEMILQREATLQKSNFCFFVLYASK 180
           SQLPIWGVRQVHCGSEILRVTLYCSFDNYEDAIRLYEMILQREATLQKSNFCFFVLYASK
Sbjct: 121 SQLPIWGVRQVHCGSEILRVTLYCSFDNYEDAIRLYEMILQREATLQKSNFCFFVLYASK 180

Query: 181 SFALQLSLKQLPPGMSVDPKESSVLQFKVQEIGQLVPLLPNPCMPISSTRWQTQDYDGNK 240
           SFALQLSLKQLPPGMSVDPKESSVLQFKVQEIGQLVPLLPNPCMPISSTRWQTQDYDGNK
Sbjct: 181 SFALQLSLKQLPPGMSVDPKESSVLQFKVQEIGQLVPLLPNPCMPISSTRWQTQDYDGNK 240

Query: 241 ILLQ 244
           ILLQ
Sbjct: 241 ILLQ 244


>gi|31542760 hypothetical protein LOC220108 [Homo sapiens]
          Length = 582

 Score =  224 bits (570), Expect = 8e-59
 Identities = 103/244 (42%), Positives = 164/244 (67%), Gaps = 3/244 (1%)

Query: 1   MDETQGPLAMTVHLLANSGHGSLLQRTLDQLLDCICPEVRLFQVSERASPVKYCEKSHSK 60
           ++E Q P  +++H++A+ G    LQ  +D +L  I P++ LF+VSER +  +   +    
Sbjct: 74  VEEAQDPFLVSIHIIADPGESQPLQEAIDNVLAWIHPDLPLFRVSERRASRR---RRKPP 130

Query: 61  RSRFPGMSVLLFLHESPGEDRLFRVLDSLQHSPWQCYPTQDTRGRLCPYFFANQEFYSLD 120
           +   P ++V+LFL E  GE+++ ++  +LQ  PW+ + T+   GR  PY   +Q+F++L 
Sbjct: 131 KGAQPALAVVLFLQEEYGEEQILQLHRTLQQPPWRHHHTEQVHGRFLPYLPCSQDFFTLA 190

Query: 121 SQLPIWGVRQVHCGSEILRVTLYCSFDNYEDAIRLYEMILQREATLQKSNFCFFVLYASK 180
              P+W +R VH G EI+R T+YC +DNY D++R Y++IL+R  + +K++FC F ++++ 
Sbjct: 191 PGTPLWAIRPVHYGKEIVRFTVYCRYDNYADSLRFYQLILRRNPSQKKADFCIFPIFSNL 250

Query: 181 SFALQLSLKQLPPGMSVDPKESSVLQFKVQEIGQLVPLLPNPCMPISSTRWQTQDYDGNK 240
              +Q SLK+LP      P +SSVL+F+V++IG+LVPLLPNPC PIS  RWQT+D+DGNK
Sbjct: 251 DVDIQFSLKRLPCDQCPVPTDSSVLEFRVRDIGELVPLLPNPCSPISEGRWQTEDHDGNK 310

Query: 241 ILLQ 244
           ILLQ
Sbjct: 311 ILLQ 314


>gi|205830426 solute carrier family 39 (zinc transporter), member 14
           isoform c [Homo sapiens]
          Length = 481

 Score = 33.1 bits (74), Expect = 0.27
 Identities = 16/31 (51%), Positives = 18/31 (58%)

Query: 242 LLQRWESSSVAQTRVRWCHHSSLRSSPSGFK 272
           L    E  SVAQ  V+WCH SSL+  P G K
Sbjct: 441 LADMMEFCSVAQAGVQWCHLSSLQPLPLGLK 471


>gi|149588643 zinc finger protein 283 [Homo sapiens]
          Length = 679

 Score = 32.0 bits (71), Expect = 0.59
 Identities = 14/25 (56%), Positives = 17/25 (68%)

Query: 247 ESSSVAQTRVRWCHHSSLRSSPSGF 271
           ES SVAQ  V+WC   SL++ P GF
Sbjct: 2   ESRSVAQAGVQWCDLGSLQAPPPGF 26


>gi|168693643 decay accelerating factor for complement isoform 2
           precursor [Homo sapiens]
          Length = 440

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 13/25 (52%), Positives = 15/25 (60%)

Query: 248 SSSVAQTRVRWCHHSSLRSSPSGFK 272
           S  V Q  +RWC  SSL+S   GFK
Sbjct: 362 SRPVTQAGMRWCDRSSLQSRTPGFK 386


>gi|193794843 BEN domain containing 2 [Homo sapiens]
          Length = 799

 Score = 29.6 bits (65), Expect = 2.9
 Identities = 17/37 (45%), Positives = 21/37 (56%), Gaps = 1/37 (2%)

Query: 237 DGNKILLQR-WESSSVAQTRVRWCHHSSLRSSPSGFK 272
           DG+   LQ  + S SV Q  V+W  HSSL+  P G K
Sbjct: 69  DGHHRPLQMSYGSGSVTQAGVQWHDHSSLQPQPLGLK 105


>gi|47578099 selenoprotein N, 1 isoform 1 precursor [Homo sapiens]
          Length = 590

 Score = 29.3 bits (64), Expect = 3.8
 Identities = 12/18 (66%), Positives = 14/18 (77%)

Query: 248 SSSVAQTRVRWCHHSSLR 265
           S SV QT V+WC HSSL+
Sbjct: 102 SCSVTQTGVQWCSHSSLQ 119


>gi|7669479 RNA-specific adenosine deaminase B1 isoform 3 [Homo
           sapiens]
          Length = 714

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 248 SSSVAQTRVRWCHHSSLRSSPSG 270
           S S  Q  V+WC+H SL+  P G
Sbjct: 467 SRSYTQAGVQWCNHGSLQPRPPG 489


>gi|7669477 RNA-specific adenosine deaminase B1 isoform 2 [Homo
           sapiens]
          Length = 741

 Score = 28.5 bits (62), Expect = 6.5
 Identities = 11/23 (47%), Positives = 14/23 (60%)

Query: 248 SSSVAQTRVRWCHHSSLRSSPSG 270
           S S  Q  V+WC+H SL+  P G
Sbjct: 467 SRSYTQAGVQWCNHGSLQPRPPG 489


>gi|19743817 integrin beta 1 isoform 1C-1 precursor [Homo sapiens]
          Length = 825

 Score = 28.1 bits (61), Expect = 8.5
 Identities = 14/29 (48%), Positives = 20/29 (68%), Gaps = 1/29 (3%)

Query: 245 RWESS-SVAQTRVRWCHHSSLRSSPSGFK 272
           +W++S SVAQ  V+WC  SSL+   S F+
Sbjct: 774 KWDTSLSVAQPGVQWCDISSLQPLTSRFQ 802


>gi|47825361 non-specific cytotoxic cell receptor protein 1 homolog
           [Homo sapiens]
          Length = 275

 Score = 28.1 bits (61), Expect = 8.5
 Identities = 18/51 (35%), Positives = 26/51 (50%), Gaps = 5/51 (9%)

Query: 43  QVSERASPVKYCEKSHSKRSRFPGMSVLLFLHES-----PGEDRLFRVLDS 88
           + S R  P ++ + SH  R   PG+  + FLH++     PG  R  RV DS
Sbjct: 217 RTSGRGPPGRWVQVSHVFRHYGPGVRFIHFLHKAKNRMEPGGLRRTRVTDS 267


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.425 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 10,633,218
Number of Sequences: 37866
Number of extensions: 446092
Number of successful extensions: 943
Number of sequences better than 10.0: 12
Number of HSP's better than 10.0 without gapping: 10
Number of HSP's successfully gapped in prelim test: 2
Number of HSP's that attempted gapping in prelim test: 930
Number of HSP's gapped (non-prelim): 14
length of query: 272
length of database: 18,247,518
effective HSP length: 101
effective length of query: 171
effective length of database: 14,423,052
effective search space: 2466341892
effective search space used: 2466341892
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.