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Search of human proteins with 30425406
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30425406 hypothetical protein LOC140856 [Homo sapiens]
(156 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30425406 hypothetical protein LOC140856 [Homo sapiens] 320 4e-88
gi|4504505 hydroxysteroid (17-beta) dehydrogenase 4 [Homo sapiens] 124 2e-29
gi|55956779 sterol carrier protein 2 isoform 2 precursor [Homo s... 80 9e-16
gi|19923233 sterol carrier protein 2 isoform 1 proprotein [Homo ... 78 3e-15
gi|55956777 sterol carrier protein 2 isoform 1 precursor [Homo s... 78 3e-15
gi|40254986 hydroxysteroid dehydrogenase like 2 [Homo sapiens] 57 8e-09
gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens] 44 7e-05
gi|31377750 YTH domain family, member 1 [Homo sapiens] 29 1.4
gi|114326455 chromodomain helicase DNA binding protein 8 [Homo s... 28 3.2
gi|27894361 nuclear receptor subfamily 4, group A, member 3 isof... 28 4.1
gi|27894357 nuclear receptor subfamily 4, group A, member 3 isof... 28 4.1
gi|27894355 nuclear receptor subfamily 4, group A, member 3 isof... 28 4.1
gi|31657129 phosphoribosylformylglycinamidine synthase [Homo sap... 27 5.4
gi|58530871 melanoma antigen family A, 4 [Homo sapiens] 27 7.0
gi|58530869 melanoma antigen family A, 4 [Homo sapiens] 27 7.0
gi|58530867 melanoma antigen family A, 4 [Homo sapiens] 27 7.0
gi|58530865 melanoma antigen family A, 4 [Homo sapiens] 27 7.0
gi|55750053 atrophin-1 [Homo sapiens] 27 9.2
gi|55750041 atrophin-1 [Homo sapiens] 27 9.2
>gi|30425406 hypothetical protein LOC140856 [Homo sapiens]
Length = 156
Score = 320 bits (819), Expect = 4e-88
Identities = 156/156 (100%), Positives = 156/156 (100%)
Query: 1 MWKRSDHQPKIKAEDGPLVGQFEVLGSVPEPAMPHPLELSEFESFPVFQDIRLHIREVGA 60
MWKRSDHQPKIKAEDGPLVGQFEVLGSVPEPAMPHPLELSEFESFPVFQDIRLHIREVGA
Sbjct: 1 MWKRSDHQPKIKAEDGPLVGQFEVLGSVPEPAMPHPLELSEFESFPVFQDIRLHIREVGA 60
Query: 61 QLVKKVNAVFQLDITKNGKTILRWTIDLKNGSGDMYPGPARLPADTVFTIPESVFMELVL 120
QLVKKVNAVFQLDITKNGKTILRWTIDLKNGSGDMYPGPARLPADTVFTIPESVFMELVL
Sbjct: 61 QLVKKVNAVFQLDITKNGKTILRWTIDLKNGSGDMYPGPARLPADTVFTIPESVFMELVL 120
Query: 121 GKMNPQKAFLAGKFKVSGKVLLSWKLERVFKDWAKF 156
GKMNPQKAFLAGKFKVSGKVLLSWKLERVFKDWAKF
Sbjct: 121 GKMNPQKAFLAGKFKVSGKVLLSWKLERVFKDWAKF 156
>gi|4504505 hydroxysteroid (17-beta) dehydrogenase 4 [Homo sapiens]
Length = 736
Score = 124 bits (312), Expect = 2e-29
Identities = 67/160 (41%), Positives = 100/160 (62%), Gaps = 6/160 (3%)
Query: 1 MWKRSDH---QPKIKAEDGPLV--GQFEVLGSVPEPAMPHPLELSEFESFPVFQDIRLHI 55
MWK + Q K++ E G +V + L + P E + +S VF++I +
Sbjct: 577 MWKEGNRIHFQTKVQ-ETGDIVISNAYVDLAPTSGTSAKTPSEGGKLQSTFVFEEIGRRL 635
Query: 56 REVGAQLVKKVNAVFQLDITKNGKTILRWTIDLKNGSGDMYPGPARLPADTVFTIPESVF 115
+++G ++VKKVNAVF+ ITK G +WTIDLK+GSG +Y GPA+ ADT + + F
Sbjct: 636 KDIGPEVVKKVNAVFEWHITKGGNIGAKWTIDLKSGSGKVYQGPAKGAADTTIILSDEDF 695
Query: 116 MELVLGKMNPQKAFLAGKFKVSGKVLLSWKLERVFKDWAK 155
ME+VLGK++PQKAF +G+ K G ++LS KL+ + KD+AK
Sbjct: 696 MEVVLGKLDPQKAFFSGRLKARGNIMLSQKLQMILKDYAK 735
>gi|55956779 sterol carrier protein 2 isoform 2 precursor [Homo
sapiens]
Length = 140
Score = 79.7 bits (195), Expect = 9e-16
Identities = 45/129 (34%), Positives = 68/129 (52%), Gaps = 9/129 (6%)
Query: 29 PEPAMPHPLEL-------SEFESFPVFQDIRLHIREVGAQLVKKVNAVFQLDITKN-GKT 80
PE A H +E F++ VF++I + E G Q VKK+ +F + G
Sbjct: 4 PEAARTHQIEAVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGK 63
Query: 81 ILRWTIDLKNGSGDMYPGPARLPADTVFTIPESVFMELVLGKMNPQKAFLAGKFKVSGKV 140
W +D+KNG G + P + AD T+ +S F+ L+ GKMNPQ AF GK K++G +
Sbjct: 64 EATWVVDVKNGKGSVLPNSDK-KADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNM 122
Query: 141 LLSWKLERV 149
L+ KL+ +
Sbjct: 123 GLAMKLQNL 131
>gi|19923233 sterol carrier protein 2 isoform 1 proprotein [Homo
sapiens]
Length = 547
Score = 78.2 bits (191), Expect = 3e-15
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 32 AMPHPLELSEFESFPVFQDIRLHIREVGAQLVKKVNAVFQLDITKN-GKTILRWTIDLKN 90
A+P F++ VF++I + E G Q VKK+ +F + G W +D+KN
Sbjct: 421 AVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKN 480
Query: 91 GSGDMYPGPARLPADTVFTIPESVFMELVLGKMNPQKAFLAGKFKVSGKVLLSWKLERV 149
G G + P + AD T+ +S F+ L+ GKMNPQ AF GK K++G + L+ KL+ +
Sbjct: 481 GKGSVLPNSDK-KADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNL 538
>gi|55956777 sterol carrier protein 2 isoform 1 precursor [Homo
sapiens]
Length = 143
Score = 78.2 bits (191), Expect = 3e-15
Identities = 42/119 (35%), Positives = 65/119 (54%), Gaps = 2/119 (1%)
Query: 32 AMPHPLELSEFESFPVFQDIRLHIREVGAQLVKKVNAVFQLDITKN-GKTILRWTIDLKN 90
A+P F++ VF++I + E G Q VKK+ +F + G W +D+KN
Sbjct: 17 AVPTSSASDGFKANLVFKEIEKKLEEEGEQFVKKIGGIFAFKVKDGPGGKEATWVVDVKN 76
Query: 91 GSGDMYPGPARLPADTVFTIPESVFMELVLGKMNPQKAFLAGKFKVSGKVLLSWKLERV 149
G G + P + AD T+ +S F+ L+ GKMNPQ AF GK K++G + L+ KL+ +
Sbjct: 77 GKGSVLPNSDK-KADCTITMADSDFLALMTGKMNPQSAFFQGKLKITGNMGLAMKLQNL 134
>gi|40254986 hydroxysteroid dehydrogenase like 2 [Homo sapiens]
Length = 418
Score = 56.6 bits (135), Expect = 8e-09
Identities = 38/134 (28%), Positives = 69/134 (51%), Gaps = 16/134 (11%)
Query: 23 EVLGSVPE------PAMPHPLELSEFESFPVFQDIRLHIREVGAQLVKKVNAVFQLDIT- 75
E G+VPE P P + E+F + +D + +VK A++ +++
Sbjct: 286 ESTGAVPEFKEEKLQLQPKPRSGAVEETFRIVKD------SLSDDVVKATQAIYLFELSG 339
Query: 76 KNGKTILRWTIDLKNGSGDMYPGPARLPADTVFTIPESVFMELVLGKMNPQKAFLAGKFK 135
++G T W +DLK+ G++ G AD V ++ F+++ GK+ P AF++GK K
Sbjct: 340 EDGGT---WFLDLKSKGGNVGYGEPSDQADVVMSMTTDDFVKMFSGKLKPTMAFMSGKLK 396
Query: 136 VSGKVLLSWKLERV 149
+ G + L+ KLE++
Sbjct: 397 IKGNMALAIKLEKL 410
>gi|20149563 stomatin (EPB72)-like 1 [Homo sapiens]
Length = 398
Score = 43.5 bits (101), Expect = 7e-05
Identities = 27/91 (29%), Positives = 48/91 (52%), Gaps = 2/91 (2%)
Query: 62 LVKKVNAVFQLDITKNGKTILRWTIDLKNGSGDMYPG-PARLPADTVFTIPESVFMELVL 120
LV +V A +Q ++ T + +DL G G + G P +P D V + E+ L+
Sbjct: 306 LVSQVGACYQFNVVLPSGTQSAYFLDLTTGRGRVGHGVPDGIP-DVVVEMAEADLRALLC 364
Query: 121 GKMNPQKAFLAGKFKVSGKVLLSWKLERVFK 151
++ P A+++G+ KV G + ++ KLE V +
Sbjct: 365 RELRPLGAYMSGRLKVKGDLAMAMKLEAVLR 395
>gi|31377750 YTH domain family, member 1 [Homo sapiens]
Length = 559
Score = 29.3 bits (64), Expect = 1.4
Identities = 12/42 (28%), Positives = 25/42 (59%), Gaps = 5/42 (11%)
Query: 3 KRSDHQPKIKAEDGPLVGQFEVLGSVPEPAMPHPLELSEFES 44
K + QPK+K + GP++G G +P P + H +++ +++
Sbjct: 240 KPAKPQPKMKTKSGPVMG-----GGLPPPPIKHNMDIGTWDN 276
>gi|114326455 chromodomain helicase DNA binding protein 8 [Homo
sapiens]
Length = 2302
Score = 28.1 bits (61), Expect = 3.2
Identities = 18/57 (31%), Positives = 28/57 (49%), Gaps = 1/57 (1%)
Query: 11 IKAEDGPLVGQFEVLGSV-PEPAMPHPLELSEFESFPVFQDIRLHIREVGAQLVKKV 66
IK D + +V G + PEP +P P++ + E+ P Q + E A +V KV
Sbjct: 312 IKITDDEEEEEVDVTGPIKPEPILPEPVQEPDGETLPSMQFFVENPSEEDAAIVDKV 368
>gi|27894361 nuclear receptor subfamily 4, group A, member 3 isoform
b [Homo sapiens]
Length = 637
Score = 27.7 bits (60), Expect = 4.1
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 81 ILRWTIDLKNGSGDMYPGPARLPADTVFTIPESVFMELVLGKMNPQKAFLAGKFK-VSGK 139
+L +ID+ + PG LP + + ES F+EL + +++ + KF +G
Sbjct: 451 LLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFVFCNGL 510
Query: 140 VLLSWKLERVFKDW 153
VL + R F +W
Sbjct: 511 VLHRLQCLRGFGEW 524
>gi|27894357 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 27.7 bits (60), Expect = 4.1
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 81 ILRWTIDLKNGSGDMYPGPARLPADTVFTIPESVFMELVLGKMNPQKAFLAGKFK-VSGK 139
+L +ID+ + PG LP + + ES F+EL + +++ + KF +G
Sbjct: 440 LLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFVFCNGL 499
Query: 140 VLLSWKLERVFKDW 153
VL + R F +W
Sbjct: 500 VLHRLQCLRGFGEW 513
>gi|27894355 nuclear receptor subfamily 4, group A, member 3 isoform
a [Homo sapiens]
Length = 626
Score = 27.7 bits (60), Expect = 4.1
Identities = 20/74 (27%), Positives = 35/74 (47%), Gaps = 1/74 (1%)
Query: 81 ILRWTIDLKNGSGDMYPGPARLPADTVFTIPESVFMELVLGKMNPQKAFLAGKFK-VSGK 139
+L +ID+ + PG LP + + ES F+EL + +++ + KF +G
Sbjct: 440 LLTASIDVSRSWAEKIPGFTDLPKEDQTLLIESAFLELFVLRLSIRSNTAEDKFVFCNGL 499
Query: 140 VLLSWKLERVFKDW 153
VL + R F +W
Sbjct: 500 VLHRLQCLRGFGEW 513
>gi|31657129 phosphoribosylformylglycinamidine synthase [Homo
sapiens]
Length = 1338
Score = 27.3 bits (59), Expect = 5.4
Identities = 17/45 (37%), Positives = 22/45 (48%), Gaps = 8/45 (17%)
Query: 89 KNGSGDMYPGPARLPADTVFTIPESVFMELVLGKMNPQKAFLAGK 133
+NG GD P P P D + +E VLGKM ++ FL K
Sbjct: 610 RNGQGDAPPTPLPTPVD--------LELEWVLGKMPRKEFFLQRK 646
>gi|58530871 melanoma antigen family A, 4 [Homo sapiens]
Length = 317
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 84 WTIDLKNGSGDMYPGPARLPADTVFTIPESVFMELVLGKMNPQKAFLAGKFKVSGKVLLS 143
W + S GP+ P ES+F E + K++ FL K++ V +
Sbjct: 81 WRQPNEGSSSQEEEGPSTSPD------AESLFREALSNKVDELAHFLLRKYRAKELVTKA 134
Query: 144 WKLERVFKDWAK 155
LERV K++ +
Sbjct: 135 EMLERVIKNYKR 146
>gi|58530869 melanoma antigen family A, 4 [Homo sapiens]
Length = 317
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 84 WTIDLKNGSGDMYPGPARLPADTVFTIPESVFMELVLGKMNPQKAFLAGKFKVSGKVLLS 143
W + S GP+ P ES+F E + K++ FL K++ V +
Sbjct: 81 WRQPNEGSSSQEEEGPSTSPD------AESLFREALSNKVDELAHFLLRKYRAKELVTKA 134
Query: 144 WKLERVFKDWAK 155
LERV K++ +
Sbjct: 135 EMLERVIKNYKR 146
>gi|58530867 melanoma antigen family A, 4 [Homo sapiens]
Length = 317
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 84 WTIDLKNGSGDMYPGPARLPADTVFTIPESVFMELVLGKMNPQKAFLAGKFKVSGKVLLS 143
W + S GP+ P ES+F E + K++ FL K++ V +
Sbjct: 81 WRQPNEGSSSQEEEGPSTSPD------AESLFREALSNKVDELAHFLLRKYRAKELVTKA 134
Query: 144 WKLERVFKDWAK 155
LERV K++ +
Sbjct: 135 EMLERVIKNYKR 146
>gi|58530865 melanoma antigen family A, 4 [Homo sapiens]
Length = 317
Score = 26.9 bits (58), Expect = 7.0
Identities = 19/72 (26%), Positives = 31/72 (43%), Gaps = 6/72 (8%)
Query: 84 WTIDLKNGSGDMYPGPARLPADTVFTIPESVFMELVLGKMNPQKAFLAGKFKVSGKVLLS 143
W + S GP+ P ES+F E + K++ FL K++ V +
Sbjct: 81 WRQPNEGSSSQEEEGPSTSPD------AESLFREALSNKVDELAHFLLRKYRAKELVTKA 134
Query: 144 WKLERVFKDWAK 155
LERV K++ +
Sbjct: 135 EMLERVIKNYKR 146
>gi|55750053 atrophin-1 [Homo sapiens]
Length = 1190
Score = 26.6 bits (57), Expect = 9.2
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 26 GSVPEPAMPHPLELSEFESFPVFQDIRLHIREVGAQLVKKVNAVFQL 72
G++P P +PHPL +E +F R++ A L ++A QL
Sbjct: 1097 GTLPNPLLPHPLHENEVLRHQLF---AAPYRDLPASLSAPMSAAHQL 1140
>gi|55750041 atrophin-1 [Homo sapiens]
Length = 1190
Score = 26.6 bits (57), Expect = 9.2
Identities = 15/47 (31%), Positives = 24/47 (51%), Gaps = 3/47 (6%)
Query: 26 GSVPEPAMPHPLELSEFESFPVFQDIRLHIREVGAQLVKKVNAVFQL 72
G++P P +PHPL +E +F R++ A L ++A QL
Sbjct: 1097 GTLPNPLLPHPLHENEVLRHQLF---AAPYRDLPASLSAPMSAAHQL 1140
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.139 0.425
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,580,969
Number of Sequences: 37866
Number of extensions: 285721
Number of successful extensions: 587
Number of sequences better than 10.0: 19
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 8
Number of HSP's that attempted gapping in prelim test: 568
Number of HSP's gapped (non-prelim): 21
length of query: 156
length of database: 18,247,518
effective HSP length: 94
effective length of query: 62
effective length of database: 14,688,114
effective search space: 910663068
effective search space used: 910663068
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.