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Search of human proteins with 30065649
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|30065649 protein phosphatase 2A, regulatory subunit B'
isoform d [Homo sapiens]
(281 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|30065649 protein phosphatase 2A, regulatory subunit B' isofor... 580 e-166
gi|30065643 protein phosphatase 2A, regulatory subunit B' isofor... 560 e-160
gi|29725611 protein phosphatase 2A, regulatory subunit B' isofor... 560 e-160
gi|30065645 protein phosphatase 2A, regulatory subunit B' isofor... 437 e-123
gi|30410794 proteasome activator subunit 3 isoform 1 [Homo sapiens] 30 2.4
gi|30410796 proteasome activator subunit 3 isoform 2 [Homo sapiens] 30 2.4
gi|50897854 hypothetical protein LOC220965 isoform 2 [Homo sapiens] 29 4.0
gi|6912464 latrophilin 2 precursor [Homo sapiens] 29 5.3
gi|32483361 apoptotic peptidase activating factor 1 isoform d [H... 28 9.0
gi|32483359 apoptotic peptidase activating factor 1 isoform c [H... 28 9.0
gi|4502123 apoptotic peptidase activating factor 1 isoform b [Ho... 28 9.0
gi|7108333 apoptotic peptidase activating factor 1 isoform a [Ho... 28 9.0
gi|8923920 H2A histone family, member Y2 [Homo sapiens] 28 9.0
>gi|30065649 protein phosphatase 2A, regulatory subunit B' isoform d
[Homo sapiens]
Length = 281
Score = 580 bits (1496), Expect = e-166
Identities = 281/281 (100%), Positives = 281/281 (100%)
Query: 1 MAEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVK 60
MAEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVK
Sbjct: 1 MAEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVK 60
Query: 61 GKKLTFEYRVSEEAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAF 120
GKKLTFEYRVSEEAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAF
Sbjct: 61 GKKLTFEYRVSEEAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAF 120
Query: 121 LCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIW 180
LCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIW
Sbjct: 121 LCCLCKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIW 180
Query: 181 GSSQLIDHPYLEPRHFVDEKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVP 240
GSSQLIDHPYLEPRHFVDEKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVP
Sbjct: 181 GSSQLIDHPYLEPRHFVDEKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVP 240
Query: 241 SWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPVTSG 281
SWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPVTSG
Sbjct: 241 SWSKVNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPVTSG 281
>gi|30065643 protein phosphatase 2A, regulatory subunit B' isoform b
[Homo sapiens]
Length = 323
Score = 560 bits (1443), Expect = e-160
Identities = 281/323 (86%), Positives = 281/323 (86%), Gaps = 42/323 (13%)
Query: 1 MAEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVK 60
MAEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVK
Sbjct: 1 MAEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVK 60
Query: 61 GKKLTFEYRVSE------------------------------------------EAENLV 78
GKKLTFEYRVSE EAENLV
Sbjct: 61 GKKLTFEYRVSEAIEKLVALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLV 120
Query: 79 ATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAI 138
ATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAI
Sbjct: 121 ATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAI 180
Query: 139 VFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVD 198
VFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVD
Sbjct: 181 VFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVD 240
Query: 199 EKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECL 258
EKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECL
Sbjct: 241 EKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECL 300
Query: 259 EKFPVIQHFKFGSLLPIHPVTSG 281
EKFPVIQHFKFGSLLPIHPVTSG
Sbjct: 301 EKFPVIQHFKFGSLLPIHPVTSG 323
>gi|29725611 protein phosphatase 2A, regulatory subunit B' isoform b
[Homo sapiens]
Length = 323
Score = 560 bits (1443), Expect = e-160
Identities = 281/323 (86%), Positives = 281/323 (86%), Gaps = 42/323 (13%)
Query: 1 MAEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVK 60
MAEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVK
Sbjct: 1 MAEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVK 60
Query: 61 GKKLTFEYRVSE------------------------------------------EAENLV 78
GKKLTFEYRVSE EAENLV
Sbjct: 61 GKKLTFEYRVSEAIEKLVALLNTLDRWIDETPPVDQPSRFGNKAYRTWYAKLDEEAENLV 120
Query: 79 ATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAI 138
ATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAI
Sbjct: 121 ATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCLCKIGVLRVDDQIAI 180
Query: 139 VFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVD 198
VFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVD
Sbjct: 181 VFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQLIDHPYLEPRHFVD 240
Query: 199 EKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECL 258
EKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECL
Sbjct: 241 EKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVPSWSKVNQGLIRMYKAECL 300
Query: 259 EKFPVIQHFKFGSLLPIHPVTSG 281
EKFPVIQHFKFGSLLPIHPVTSG
Sbjct: 301 EKFPVIQHFKFGSLLPIHPVTSG 323
>gi|30065645 protein phosphatase 2A, regulatory subunit B' isoform a
[Homo sapiens]
Length = 358
Score = 437 bits (1124), Expect = e-123
Identities = 211/217 (97%), Positives = 214/217 (98%)
Query: 65 TFEYRVSEEAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCL 124
T+ ++ EEAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCL
Sbjct: 142 TWYAKLDEEAENLVATVVPTHLAAAVPEVAVYLKESVGNSTRIDYGTGHEAAFAAFLCCL 201
Query: 125 CKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQ 184
CKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQ
Sbjct: 202 CKIGVLRVDDQIAIVFKVFNRYLEVMRKLQKTYRMEPAGSQGVWGLDDFQFLPFIWGSSQ 261
Query: 185 LIDHPYLEPRHFVDEKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVPSWSK 244
LIDHPYLEPRHFVDEKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVPSWSK
Sbjct: 262 LIDHPYLEPRHFVDEKAVNENHKDYMFLECILFITEMKTGPFAEHSNQLWNISAVPSWSK 321
Query: 245 VNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPVTSG 281
VNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPVTSG
Sbjct: 322 VNQGLIRMYKAECLEKFPVIQHFKFGSLLPIHPVTSG 358
Score = 151 bits (382), Expect = 5e-37
Identities = 72/72 (100%), Positives = 72/72 (100%)
Query: 1 MAEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVK 60
MAEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVK
Sbjct: 1 MAEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVK 60
Query: 61 GKKLTFEYRVSE 72
GKKLTFEYRVSE
Sbjct: 61 GKKLTFEYRVSE 72
>gi|30410794 proteasome activator subunit 3 isoform 1 [Homo sapiens]
Length = 254
Score = 30.0 bits (66), Expect = 2.4
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 52 ILTLNEGVKGKKLTFEYRVSEEAENLVATVVPTHLAAAVPEVAVYLKESVGN 103
+L +++ VK K +F R++ EAE+LVA P L E+ +LKE + N
Sbjct: 4 LLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLL----ELDSFLKEPILN 51
>gi|30410796 proteasome activator subunit 3 isoform 2 [Homo sapiens]
Length = 267
Score = 30.0 bits (66), Expect = 2.4
Identities = 19/52 (36%), Positives = 30/52 (57%), Gaps = 4/52 (7%)
Query: 52 ILTLNEGVKGKKLTFEYRVSEEAENLVATVVPTHLAAAVPEVAVYLKESVGN 103
+L +++ VK K +F R++ EAE+LVA P L E+ +LKE + N
Sbjct: 4 LLKVDQEVKLKVDSFRERITSEAEDLVANFFPKKLL----ELDSFLKEPILN 51
>gi|50897854 hypothetical protein LOC220965 isoform 2 [Homo sapiens]
Length = 487
Score = 29.3 bits (64), Expect = 4.0
Identities = 19/70 (27%), Positives = 33/70 (47%), Gaps = 6/70 (8%)
Query: 13 SEEAPPATQNFIIPKKEIHTVPDMGKWKRSQAYADYIGFILTLNEGVKGKKLTFE----Y 68
S +PP+TQ F++P+ G K Q I +L ++ + FE Y
Sbjct: 256 SAPSPPSTQQFMMPRSSSRC--SCGDGKEPQTITQLTKHIQSLKRKIRKFEEKFEQEKKY 313
Query: 69 RVSEEAENLV 78
RV+++ +NL+
Sbjct: 314 RVTKQDKNLI 323
>gi|6912464 latrophilin 2 precursor [Homo sapiens]
Length = 1403
Score = 28.9 bits (63), Expect = 5.3
Identities = 13/43 (30%), Positives = 24/43 (55%), Gaps = 1/43 (2%)
Query: 2 AEGERQPPPDSSEEAPPATQNFIIPKKEIHTVPDMG-KWKRSQ 43
++G + PP S+ + PP T F +P++ + G KW ++Q
Sbjct: 441 SKGTKPPPAVSTTKIPPITNIFPLPERFCEALDSKGIKWPQTQ 483
>gi|32483361 apoptotic peptidase activating factor 1 isoform d [Homo
sapiens]
Length = 1205
Score = 28.1 bits (61), Expect = 9.0
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Query: 181 GSSQLIDHPYLEPRHFVDEK--AVNENHKDYMFL 212
G + LI H ++E RH +DEK AV+EN ++++ L
Sbjct: 518 GPAHLI-HEFVEYRHILDEKDCAVSENFQEFLSL 550
>gi|32483359 apoptotic peptidase activating factor 1 isoform c [Homo
sapiens]
Length = 1248
Score = 28.1 bits (61), Expect = 9.0
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Query: 181 GSSQLIDHPYLEPRHFVDEK--AVNENHKDYMFL 212
G + LI H ++E RH +DEK AV+EN ++++ L
Sbjct: 518 GPAHLI-HEFVEYRHILDEKDCAVSENFQEFLSL 550
>gi|4502123 apoptotic peptidase activating factor 1 isoform b [Homo
sapiens]
Length = 1194
Score = 28.1 bits (61), Expect = 9.0
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Query: 181 GSSQLIDHPYLEPRHFVDEK--AVNENHKDYMFL 212
G + LI H ++E RH +DEK AV+EN ++++ L
Sbjct: 507 GPAHLI-HEFVEYRHILDEKDCAVSENFQEFLSL 539
>gi|7108333 apoptotic peptidase activating factor 1 isoform a [Homo
sapiens]
Length = 1237
Score = 28.1 bits (61), Expect = 9.0
Identities = 15/34 (44%), Positives = 24/34 (70%), Gaps = 3/34 (8%)
Query: 181 GSSQLIDHPYLEPRHFVDEK--AVNENHKDYMFL 212
G + LI H ++E RH +DEK AV+EN ++++ L
Sbjct: 507 GPAHLI-HEFVEYRHILDEKDCAVSENFQEFLSL 539
>gi|8923920 H2A histone family, member Y2 [Homo sapiens]
Length = 372
Score = 28.1 bits (61), Expect = 9.0
Identities = 16/45 (35%), Positives = 24/45 (53%), Gaps = 8/45 (17%)
Query: 62 KKLTFEYRVSEEAENLVATVVPTHLAAAVPEVAVYLKESVGNSTR 106
KK TF+YR+S A P ++AA + +A + E GN+ R
Sbjct: 33 KKGTFKYRISVGA--------PVYMAAVIEYLAAEILELAGNAAR 69
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.321 0.137 0.424
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 11,363,275
Number of Sequences: 37866
Number of extensions: 482760
Number of successful extensions: 1248
Number of sequences better than 10.0: 13
Number of HSP's better than 10.0 without gapping: 4
Number of HSP's successfully gapped in prelim test: 9
Number of HSP's that attempted gapping in prelim test: 1241
Number of HSP's gapped (non-prelim): 16
length of query: 281
length of database: 18,247,518
effective HSP length: 101
effective length of query: 180
effective length of database: 14,423,052
effective search space: 2596149360
effective search space used: 2596149360
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.8 bits)
S2: 61 (28.1 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.