Search of human proteins with 29553970

Search of human proteins with 29553970

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|29553970 H2A histone family, member J [Homo sapiens]
         (129 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|29553970 H2A histone family, member J [Homo sapiens]               249   3e-67
gi|24638446 histone cluster 2, H2ac [Homo sapiens]                    243   2e-65
gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]                  237   2e-63
gi|4504251 histone cluster 2, H2aa3 [Homo sapiens]                    237   2e-63
gi|10800132 histone cluster 1, H2ag [Homo sapiens]                    237   2e-63
gi|4504239 histone cluster 1, H2ai [Homo sapiens]                     237   2e-63
gi|4504241 histone cluster 1, H2ak [Homo sapiens]                     237   2e-63
gi|4504245 histone cluster 1, H2ac [Homo sapiens]                     237   2e-63
gi|4504249 histone cluster 1, H2am [Homo sapiens]                     237   2e-63
gi|4504243 histone cluster 1, H2al [Homo sapiens]                     237   2e-63
gi|10800144 histone cluster 1, H2aj [Homo sapiens]                    237   2e-63
gi|18105045 histone cluster 1, H2ah [Homo sapiens]                    236   5e-63
gi|28195394 histone cluster 2, H2ab [Homo sapiens]                    236   5e-63
gi|15617199 histone cluster 3, H2a [Homo sapiens]                     236   5e-63
gi|10800130 histone cluster 1, H2ad [Homo sapiens]                    236   5e-63
gi|19557656 histone cluster 1, H2ab [Homo sapiens]                    234   1e-62
gi|10645195 histone cluster 1, H2ae [Homo sapiens]                    234   1e-62
gi|25092737 histone cluster 1, H2aa [Homo sapiens]                    233   4e-62
gi|4504253 H2A histone family, member X [Homo sapiens]                227   2e-60
gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]      150   2e-37
gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]     150   2e-37
gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens]     150   2e-37
gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens]     150   2e-37
gi|8923920 H2A histone family, member Y2 [Homo sapiens]               147   3e-36
gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens]      139   6e-34
gi|4504255 H2A histone family, member Z [Homo sapiens]                138   1e-33
gi|20357599 H2A histone family, member V isoform 2 [Homo sapiens]     124   2e-29
gi|41406067 H2A histone family, member V isoform 3 [Homo sapiens]     111   1e-25
gi|169206129 PREDICTED: similar to hCG1643984 [Homo sapiens]          110   4e-25
gi|169206468 PREDICTED: similar to hCG1643984 [Homo sapiens]          110   4e-25

>gi|29553970 H2A histone family, member J [Homo sapiens]
          Length = 129

 Score =  249 bits (637), Expect = 3e-67
 Identities = 129/129 (100%), Positives = 129/129 (100%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
Sbjct: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TESQKTKSK 129
           TESQKTKSK
Sbjct: 121 TESQKTKSK 129


>gi|24638446 histone cluster 2, H2ac [Homo sapiens]
          Length = 129

 Score =  243 bits (621), Expect = 2e-65
 Identities = 125/129 (96%), Positives = 126/129 (97%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVY+AAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TESQKTKSK 129
           TES K KSK
Sbjct: 121 TESHKAKSK 129


>gi|106775678 histone cluster 2, H2aa4 [Homo sapiens]
          Length = 130

 Score =  237 bits (605), Expect = 2e-63
 Identities = 124/130 (95%), Positives = 125/130 (96%), Gaps = 1/130 (0%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVY+AAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TES-QKTKSK 129
           TES  K K K
Sbjct: 121 TESHHKAKGK 130


>gi|4504251 histone cluster 2, H2aa3 [Homo sapiens]
          Length = 130

 Score =  237 bits (605), Expect = 2e-63
 Identities = 124/130 (95%), Positives = 125/130 (96%), Gaps = 1/130 (0%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVY+AAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYMAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TES-QKTKSK 129
           TES  K K K
Sbjct: 121 TESHHKAKGK 130


>gi|10800132 histone cluster 1, H2ag [Homo sapiens]
          Length = 130

 Score =  237 bits (604), Expect = 2e-63
 Identities = 124/130 (95%), Positives = 125/130 (96%), Gaps = 1/130 (0%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAKAK+RSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TES-QKTKSK 129
           TES  K K K
Sbjct: 121 TESHHKAKGK 130


>gi|4504239 histone cluster 1, H2ai [Homo sapiens]
          Length = 130

 Score =  237 bits (604), Expect = 2e-63
 Identities = 124/130 (95%), Positives = 125/130 (96%), Gaps = 1/130 (0%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAKAK+RSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TES-QKTKSK 129
           TES  K K K
Sbjct: 121 TESHHKAKGK 130


>gi|4504241 histone cluster 1, H2ak [Homo sapiens]
          Length = 130

 Score =  237 bits (604), Expect = 2e-63
 Identities = 124/130 (95%), Positives = 125/130 (96%), Gaps = 1/130 (0%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAKAK+RSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TES-QKTKSK 129
           TES  K K K
Sbjct: 121 TESHHKAKGK 130


>gi|4504245 histone cluster 1, H2ac [Homo sapiens]
          Length = 130

 Score =  237 bits (604), Expect = 2e-63
 Identities = 124/130 (95%), Positives = 125/130 (96%), Gaps = 1/130 (0%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG+VTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TES-QKTKSK 129
           TES  K K K
Sbjct: 121 TESHHKAKGK 130


>gi|4504249 histone cluster 1, H2am [Homo sapiens]
          Length = 130

 Score =  237 bits (604), Expect = 2e-63
 Identities = 124/130 (95%), Positives = 125/130 (96%), Gaps = 1/130 (0%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAKAK+RSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TES-QKTKSK 129
           TES  K K K
Sbjct: 121 TESHHKAKGK 130


>gi|4504243 histone cluster 1, H2al [Homo sapiens]
          Length = 130

 Score =  237 bits (604), Expect = 2e-63
 Identities = 124/130 (95%), Positives = 125/130 (96%), Gaps = 1/130 (0%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAKAK+RSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TES-QKTKSK 129
           TES  K K K
Sbjct: 121 TESHHKAKGK 130


>gi|10800144 histone cluster 1, H2aj [Homo sapiens]
          Length = 128

 Score =  237 bits (604), Expect = 2e-63
 Identities = 124/128 (96%), Positives = 125/128 (97%), Gaps = 1/128 (0%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAKAK+RSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TES-QKTK 127
           TES  KTK
Sbjct: 121 TESHHKTK 128


>gi|18105045 histone cluster 1, H2ah [Homo sapiens]
          Length = 128

 Score =  236 bits (601), Expect = 5e-63
 Identities = 121/123 (98%), Positives = 122/123 (99%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAKAK+RSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TES 123
           TES
Sbjct: 121 TES 123


>gi|28195394 histone cluster 2, H2ab [Homo sapiens]
          Length = 130

 Score =  236 bits (601), Expect = 5e-63
 Identities = 121/125 (96%), Positives = 122/125 (97%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLA+RNDEELNKLLG VTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAVRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TESQK 125
           TES K
Sbjct: 121 TESHK 125


>gi|15617199 histone cluster 3, H2a [Homo sapiens]
          Length = 130

 Score =  236 bits (601), Expect = 5e-63
 Identities = 123/130 (94%), Positives = 125/130 (96%), Gaps = 1/130 (0%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAKAKSRSSRAGLQFPVGRVHRLLRKGNY+ERVGAGAPVYLAAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG+VTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TES-QKTKSK 129
           TES  K K K
Sbjct: 121 TESHHKAKGK 130


>gi|10800130 histone cluster 1, H2ad [Homo sapiens]
          Length = 130

 Score =  236 bits (601), Expect = 5e-63
 Identities = 123/130 (94%), Positives = 125/130 (96%), Gaps = 1/130 (0%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAKAK+RSSRAGLQFPVGRVHRLLRKGNY+ERVGAGAPVYLAAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TES-QKTKSK 129
           TES  K K K
Sbjct: 121 TESHHKAKGK 130


>gi|19557656 histone cluster 1, H2ab [Homo sapiens]
          Length = 130

 Score =  234 bits (598), Expect = 1e-62
 Identities = 122/130 (93%), Positives = 125/130 (96%), Gaps = 1/130 (0%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAKAK+RSSRAGLQFPVGRVHRLLRKGNY+ERVGAGAPVYLAAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG+VTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TES-QKTKSK 129
           TES  K K K
Sbjct: 121 TESHHKAKGK 130


>gi|10645195 histone cluster 1, H2ae [Homo sapiens]
          Length = 130

 Score =  234 bits (598), Expect = 1e-62
 Identities = 122/130 (93%), Positives = 125/130 (96%), Gaps = 1/130 (0%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAKAK+RSSRAGLQFPVGRVHRLLRKGNY+ERVGAGAPVYLAAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKAKTRSSRAGLQFPVGRVHRLLRKGNYSERVGAGAPVYLAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG+VTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGRVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TES-QKTKSK 129
           TES  K K K
Sbjct: 121 TESHHKAKGK 130


>gi|25092737 histone cluster 1, H2aa [Homo sapiens]
          Length = 131

 Score =  233 bits (593), Expect = 4e-62
 Identities = 118/129 (91%), Positives = 124/129 (96%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGKQGGK RAK+KSRSSRAGLQFPVGR+HRLLRKGNYAER+GAGAPVYLAAVLEYLT
Sbjct: 1   MSGRGKQGGKARAKSKSRSSRAGLQFPVGRIHRLLRKGNYAERIGAGAPVYLAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNA+RDNKKTRIIPRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNASRDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TESQKTKSK 129
           TES   K++
Sbjct: 121 TESHHHKAQ 129


>gi|4504253 H2A histone family, member X [Homo sapiens]
          Length = 143

 Score =  227 bits (578), Expect = 2e-60
 Identities = 117/123 (95%), Positives = 119/123 (96%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGRGK GGK RAKAKSRSSRAGLQFPVGRVHRLLRKG+YAERVGAGAPVYLAAVLEYLT
Sbjct: 1   MSGRGKTGGKARAKAKSRSSRAGLQFPVGRVHRLLRKGHYAERVGAGAPVYLAAVLEYLT 60

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLG VTIAQGGVLPNIQAVLLPKK
Sbjct: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGGVTIAQGGVLPNIQAVLLPKK 120

Query: 121 TES 123
           T +
Sbjct: 121 TSA 123


>gi|4758496 H2A histone family, member Y isoform 2 [Homo sapiens]
          Length = 371

 Score =  150 bits (380), Expect = 2e-37
 Identities = 77/118 (65%), Positives = 94/118 (79%)

Query: 7   QGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66
           +GGK ++   SRS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63

Query: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESQ 124
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S+
Sbjct: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121


>gi|93141020 H2A histone family, member Y isoform 2 [Homo sapiens]
          Length = 371

 Score =  150 bits (380), Expect = 2e-37
 Identities = 77/118 (65%), Positives = 94/118 (79%)

Query: 7   QGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66
           +GGK ++   SRS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63

Query: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESQ 124
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S+
Sbjct: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121


>gi|93141018 H2A histone family, member Y isoform 3 [Homo sapiens]
          Length = 372

 Score =  150 bits (380), Expect = 2e-37
 Identities = 77/118 (65%), Positives = 94/118 (79%)

Query: 7   QGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66
           +GGK ++   SRS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63

Query: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESQ 124
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S+
Sbjct: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121


>gi|20336746 H2A histone family, member Y isoform 1 [Homo sapiens]
          Length = 369

 Score =  150 bits (380), Expect = 2e-37
 Identities = 77/118 (65%), Positives = 94/118 (79%)

Query: 7   QGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLTAEILEL 66
           +GGK ++   SRS++AG+ FPVGR+ R ++KG+   R+G GAPVY+AAVLEYLTAEILEL
Sbjct: 4   RGGKKKSTKTSRSAKAGVIFPVGRMLRYIKKGHPKYRIGVGAPVYMAAVLEYLTAEILEL 63

Query: 67  AGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESQ 124
           AGNAARDNKK R+ PRH+ LA+ NDEELN+LL  VTIA GGVLPNI   LL KK  S+
Sbjct: 64  AGNAARDNKKGRVTPRHILLAVANDEELNQLLKGVTIASGGVLPNIHPELLAKKRGSK 121


>gi|8923920 H2A histone family, member Y2 [Homo sapiens]
          Length = 372

 Score =  147 bits (370), Expect = 3e-36
 Identities = 78/120 (65%), Positives = 90/120 (75%), Gaps = 3/120 (2%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSGR    GK +    SRS+RAG+ FPVGR+ R L+KG +  R+  GAPVY+AAV+EYL 
Sbjct: 1   MSGRS---GKKKMSKLSRSARAGVIFPVGRLMRYLKKGTFKYRISVGAPVYMAAVIEYLA 57

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
           AEILELAGNAARDNKK RI PRH+ LA+ NDEELN+LL  VTIA GGVLP I   LL KK
Sbjct: 58  AEILELAGNAARDNKKARIAPRHILLAVANDEELNQLLKGVTIASGGVLPRIHPELLAKK 117


>gi|6912616 H2A histone family, member V isoform 1 [Homo sapiens]
          Length = 128

 Score =  139 bits (350), Expect = 6e-34
 Identities = 79/123 (64%), Positives = 93/123 (75%), Gaps = 3/123 (2%)

Query: 5   GKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63
           GK  GK +AKA SRS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66

Query: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTES 123
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK + 
Sbjct: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGQ- 124

Query: 124 QKT 126
           QKT
Sbjct: 125 QKT 127


>gi|4504255 H2A histone family, member Z [Homo sapiens]
          Length = 128

 Score =  138 bits (347), Expect = 1e-33
 Identities = 78/123 (63%), Positives = 92/123 (74%), Gaps = 3/123 (2%)

Query: 5   GKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63
           GK  GK + KA SRS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 7   GKDSGKAKTKAVSRSQRAGLQFPVGRIHRHLKSRTTSHGRVGATAAVYSAAILEYLTAEV 66

Query: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTES 123
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK + 
Sbjct: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGQ- 124

Query: 124 QKT 126
           QKT
Sbjct: 125 QKT 127


>gi|20357599 H2A histone family, member V isoform 2 [Homo sapiens]
          Length = 114

 Score =  124 bits (312), Expect = 2e-29
 Identities = 69/103 (66%), Positives = 79/103 (76%), Gaps = 2/103 (1%)

Query: 5   GKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEI 63
           GK  GK +AKA SRS RAGLQFPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+
Sbjct: 7   GKDSGKAKAKAVSRSQRAGLQFPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEV 66

Query: 64  LELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQG 106
           LELAGNA++D K  RI PRHLQLAIR DEEL+ L+ K TIA G
Sbjct: 67  LELAGNASKDLKVKRITPRHLQLAIRGDEELDSLI-KATIAGG 108


>gi|41406067 H2A histone family, member V isoform 3 [Homo sapiens]
          Length = 102

 Score =  111 bits (278), Expect = 1e-25
 Identities = 64/102 (62%), Positives = 77/102 (75%), Gaps = 3/102 (2%)

Query: 26  FPVGRVHRLLRKGNYAE-RVGAGAPVYLAAVLEYLTAEILELAGNAARDNKKTRIIPRHL 84
           FPVGR+HR L+    +  RVGA A VY AA+LEYLTAE+LELAGNA++D K  RI PRHL
Sbjct: 2   FPVGRIHRHLKTRTTSHGRVGATAAVYSAAILEYLTAEVLELAGNASKDLKVKRITPRHL 61

Query: 85  QLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKKTESQKT 126
           QLAIR DEEL+ L+ K TIA GGV+P+I   L+ KK + QKT
Sbjct: 62  QLAIRGDEELDSLI-KATIAGGGVIPHIHKSLIGKKGQ-QKT 101


>gi|169206129 PREDICTED: similar to hCG1643984 [Homo sapiens]
          Length = 111

 Score =  110 bits (274), Expect = 4e-25
 Identities = 70/130 (53%), Positives = 78/130 (60%), Gaps = 20/130 (15%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSG GKQ  K   +AK++ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLGKV I Q  VLPNIQA +LPKK
Sbjct: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101

Query: 121 TESQ-KTKSK 129
           TES  K K K
Sbjct: 102 TESHLKVKEK 111


>gi|169206468 PREDICTED: similar to hCG1643984 [Homo sapiens]
          Length = 111

 Score =  110 bits (274), Expect = 4e-25
 Identities = 70/130 (53%), Positives = 78/130 (60%), Gaps = 20/130 (15%)

Query: 1   MSGRGKQGGKVRAKAKSRSSRAGLQFPVGRVHRLLRKGNYAERVGAGAPVYLAAVLEYLT 60
           MSG GKQ  K   +AK++ S   LQF  G VH LL KGNY E+                 
Sbjct: 1   MSGCGKQSSKACTEAKTQPSWVSLQFLTGCVHLLLFKGNYYEK----------------- 43

Query: 61  AEILELAGNAARDNKKTRIIPRHLQLAIRNDEELNKLLGKVTIAQGGVLPNIQAVLLPKK 120
             ILELAGN   DNKKT II  HLQLA  N+E++NKLLGKV I Q  VLPNIQA +LPKK
Sbjct: 44  --ILELAGNGTCDNKKTCIILHHLQLASCNNEDVNKLLGKVIITQVTVLPNIQAKMLPKK 101

Query: 121 TESQ-KTKSK 129
           TES  K K K
Sbjct: 102 TESHLKVKEK 111


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.315    0.133    0.359 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 4,338,478
Number of Sequences: 37866
Number of extensions: 168497
Number of successful extensions: 372
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 60
Number of HSP's successfully gapped in prelim test: 7
Number of HSP's that attempted gapping in prelim test: 298
Number of HSP's gapped (non-prelim): 69
length of query: 129
length of database: 18,247,518
effective HSP length: 90
effective length of query: 39
effective length of database: 14,839,578
effective search space: 578743542
effective search space used: 578743542
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 42 (22.0 bits)
S2: 55 (25.8 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.