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Search of human proteins with 28603828
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|28603828 Rieske (Fe-S) domain containing isoform 2 [Homo
sapiens]
(157 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|197100550 Rieske (Fe-S) domain containing isoform 1 [Homo sap... 337 3e-93
gi|197100526 Rieske (Fe-S) domain containing isoform 1 [Homo sap... 337 3e-93
gi|28603828 Rieske (Fe-S) domain containing isoform 2 [Homo sapi... 337 3e-93
gi|226437568 apoptosis-inducing factor, mitochondrion-associated... 39 0.001
gi|65787454 apoptosis-inducing factor, mitochondrion-associated,... 39 0.001
gi|21389617 apoptosis-inducing factor, mitochondrion-associated,... 39 0.001
gi|239746705 PREDICTED: hypothetical protein XP_002343815 [Homo ... 29 1.4
gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform ... 29 1.9
gi|114431236 zinc finger protein 462 [Homo sapiens] 28 2.5
gi|10047102 ribosomal protein L24-like [Homo sapiens] 28 2.5
gi|118197272 ATG2 autophagy related 2 homolog B [Homo sapiens] 28 4.2
gi|191252785 centrobin, centrosomal BRCA2 interacting protein is... 27 7.1
gi|80861396 centrobin, centrosomal BRCA2 interacting protein iso... 27 7.1
gi|197382472 actin filament associated protein 1 isoform a [Homo... 27 9.3
gi|194306543 oxidation resistance 1 isoform 2 [Homo sapiens] 27 9.3
gi|194306541 oxidation resistance 1 isoform 1 [Homo sapiens] 27 9.3
>gi|197100550 Rieske (Fe-S) domain containing isoform 1 [Homo
sapiens]
Length = 210
Score = 337 bits (863), Expect = 3e-93
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHS 60
MNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHS
Sbjct: 54 MNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHS 113
Query: 61 GGPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIH 120
GGPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIH
Sbjct: 114 GGPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIH 173
Query: 121 TVTVDNGNIYVTLSNEPFKCDSDFYATGDFKVIKSSS 157
TVTVDNGNIYVTLSNEPFKCDSDFYATGDFKVIKSSS
Sbjct: 174 TVTVDNGNIYVTLSNEPFKCDSDFYATGDFKVIKSSS 210
>gi|197100526 Rieske (Fe-S) domain containing isoform 1 [Homo
sapiens]
Length = 210
Score = 337 bits (863), Expect = 3e-93
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHS 60
MNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHS
Sbjct: 54 MNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHS 113
Query: 61 GGPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIH 120
GGPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIH
Sbjct: 114 GGPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIH 173
Query: 121 TVTVDNGNIYVTLSNEPFKCDSDFYATGDFKVIKSSS 157
TVTVDNGNIYVTLSNEPFKCDSDFYATGDFKVIKSSS
Sbjct: 174 TVTVDNGNIYVTLSNEPFKCDSDFYATGDFKVIKSSS 210
>gi|28603828 Rieske (Fe-S) domain containing isoform 2 [Homo
sapiens]
Length = 157
Score = 337 bits (863), Expect = 3e-93
Identities = 157/157 (100%), Positives = 157/157 (100%)
Query: 1 MNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHS 60
MNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHS
Sbjct: 1 MNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHS 60
Query: 61 GGPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIH 120
GGPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIH
Sbjct: 61 GGPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIH 120
Query: 121 TVTVDNGNIYVTLSNEPFKCDSDFYATGDFKVIKSSS 157
TVTVDNGNIYVTLSNEPFKCDSDFYATGDFKVIKSSS
Sbjct: 121 TVTVDNGNIYVTLSNEPFKCDSDFYATGDFKVIKSSS 157
>gi|226437568 apoptosis-inducing factor, mitochondrion-associated, 3
isoform 3 [Homo sapiens]
Length = 604
Score = 39.3 bits (90), Expect = 0.001
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 10 PEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGDI 69
P ++ V D++ + + +V++ GE+HA+ +C H G PL G +
Sbjct: 68 PSPQDCVEAAVCHVKDLENGQMREVELGWGKVLLVKDNGEFHALGHKCPHYGAPLVKGVL 127
Query: 70 EDFDGRPCIVCPWHKYKITLATGE 93
R + CPWH ++TG+
Sbjct: 128 ----SRGRVRCPWHGACFNISTGD 147
>gi|65787454 apoptosis-inducing factor, mitochondrion-associated, 3
isoform 2 [Homo sapiens]
Length = 598
Score = 39.3 bits (90), Expect = 0.001
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 10 PEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGDI 69
P ++ V D++ + + +V++ GE+HA+ +C H G PL G +
Sbjct: 62 PSPQDCVEAAVCHVKDLENGQMREVELGWGKVLLVKDNGEFHALGHKCPHYGAPLVKGVL 121
Query: 70 EDFDGRPCIVCPWHKYKITLATGE 93
R + CPWH ++TG+
Sbjct: 122 ----SRGRVRCPWHGACFNISTGD 141
>gi|21389617 apoptosis-inducing factor, mitochondrion-associated, 3
isoform 1 [Homo sapiens]
Length = 605
Score = 39.3 bits (90), Expect = 0.001
Identities = 21/84 (25%), Positives = 38/84 (45%), Gaps = 4/84 (4%)
Query: 10 PEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKGEYHAMDIRCYHSGGPLHLGDI 69
P ++ V D++ + + +V++ GE+HA+ +C H G PL G +
Sbjct: 62 PSPQDCVEAAVCHVKDLENGQMREVELGWGKVLLVKDNGEFHALGHKCPHYGAPLVKGVL 121
Query: 70 EDFDGRPCIVCPWHKYKITLATGE 93
R + CPWH ++TG+
Sbjct: 122 ----SRGRVRCPWHGACFNISTGD 141
>gi|239746705 PREDICTED: hypothetical protein XP_002343815 [Homo
sapiens]
Length = 411
Score = 29.3 bits (64), Expect = 1.4
Identities = 13/48 (27%), Positives = 24/48 (50%), Gaps = 1/48 (2%)
Query: 78 IVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIHTVTVD 125
++C + + GEG+ ++ P P +P+ CS + R HT + D
Sbjct: 56 VLCIQELRAVRMGPGEGVLRATGP-GPDVQPQMCSNISRARAHTYSAD 102
>gi|10835015 gamma-aminobutyric acid (GABA) B receptor 1 isoform a
precursor [Homo sapiens]
Length = 961
Score = 28.9 bits (63), Expect = 1.9
Identities = 18/60 (30%), Positives = 29/60 (48%), Gaps = 14/60 (23%)
Query: 104 PSAKPKWCSKGIKQRIHTVTVDNGNIYVTLSNEP--------FKCDSDFYATGDFKVIKS 155
PS + CSK +T++NG +++T + P F+CD DF+ G + I S
Sbjct: 93 PSRCVRICSKSY------LTLENGKVFLTGGDLPALDGARVDFRCDPDFHLVGSSRSICS 146
>gi|114431236 zinc finger protein 462 [Homo sapiens]
Length = 2506
Score = 28.5 bits (62), Expect = 2.5
Identities = 19/48 (39%), Positives = 23/48 (47%), Gaps = 5/48 (10%)
Query: 1 MNLDGSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIFYHKG 48
+NLD Q EK E SS DD K E M + DRE++ F G
Sbjct: 2363 VNLDQLEQMKEKMESSS-----SDDEDKEEEMNSKAEDRELMRFSDHG 2405
>gi|10047102 ribosomal protein L24-like [Homo sapiens]
Length = 163
Score = 28.5 bits (62), Expect = 2.5
Identities = 22/90 (24%), Positives = 34/90 (37%), Gaps = 8/90 (8%)
Query: 56 RCYHSGGPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGI 115
+CY GP++ G F C V + K K +++ K K +W
Sbjct: 5 KCYFCSGPIYPGHGMMFVRNDCKVFRFCKSKC--------HKNFKKKRNPRKVRWTKAFR 56
Query: 116 KQRIHTVTVDNGNIYVTLSNEPFKCDSDFY 145
K +TVDN + NEP K + +
Sbjct: 57 KAAGKELTVDNSFEFEKRRNEPIKYQRELW 86
>gi|118197272 ATG2 autophagy related 2 homolog B [Homo sapiens]
Length = 2078
Score = 27.7 bits (60), Expect = 4.2
Identities = 14/42 (33%), Positives = 21/42 (50%)
Query: 97 QSINPKDPSAKPKWCSKGIKQRIHTVTVDNGNIYVTLSNEPF 138
Q + P DP ++ K I + + + NIYVTL N+ F
Sbjct: 912 QMVMPGDPVEMTEFQDKAISNSHYVLELTLPNIYVTLPNKSF 953
>gi|191252785 centrobin, centrosomal BRCA2 interacting protein
isoform alpha [Homo sapiens]
Length = 903
Score = 26.9 bits (58), Expect = 7.1
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 62 GPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQR 118
GPL + E+ P I P HK K+ LA L++ P ++ S G +R
Sbjct: 737 GPLTVPSWEEAPQVPRIPPPVHKTKVPLAMASSLFRVPEPPSSHSQGSGPSSGSPER 793
>gi|80861396 centrobin, centrosomal BRCA2 interacting protein
isoform beta [Homo sapiens]
Length = 925
Score = 26.9 bits (58), Expect = 7.1
Identities = 17/57 (29%), Positives = 25/57 (43%)
Query: 62 GPLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQR 118
GPL + E+ P I P HK K+ LA L++ P ++ S G +R
Sbjct: 737 GPLTVPSWEEAPQVPRIPPPVHKTKVPLAMASSLFRVPEPPSSHSQGSGPSSGSPER 793
>gi|197382472 actin filament associated protein 1 isoform a [Homo
sapiens]
Length = 814
Score = 26.6 bits (57), Expect = 9.3
Identities = 32/131 (24%), Positives = 48/131 (36%), Gaps = 33/131 (25%)
Query: 5 GSAQDPEKREYSSVCVGREDDIKKSERMTAVVHDREVVIF--YHKGEYHAMDIRCYHSGG 62
GS+ DPE Y + V + ++ + T +R V+ Y G + + SG
Sbjct: 441 GSSTDPEALHYDYIDVEMSASVIQTAKQTFCFMNRRVISANPYLGGTSNGY---AHPSGT 497
Query: 63 PLHLGDIEDFDGRPCIVCPWHKYKITLATGEGLYQSINPKDPSAKPKWCSKGIKQRIHTV 122
LH D+ PCI W P+D P CS+G+ + V
Sbjct: 498 ALHYDDV------PCINGSW-----------------EPED--GFPASCSRGLGEE---V 529
Query: 123 TVDNGNIYVTL 133
DN +Y L
Sbjct: 530 LYDNAGLYDNL 540
>gi|194306543 oxidation resistance 1 isoform 2 [Homo sapiens]
Length = 839
Score = 26.6 bits (57), Expect = 9.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 126 NGNIYVTLSNEPFKCDSDFYATGD 149
+G ++ L++EP K FY TG+
Sbjct: 736 DGQVFGALASEPLKVSDGFYGTGE 759
>gi|194306541 oxidation resistance 1 isoform 1 [Homo sapiens]
Length = 846
Score = 26.6 bits (57), Expect = 9.3
Identities = 9/24 (37%), Positives = 15/24 (62%)
Query: 126 NGNIYVTLSNEPFKCDSDFYATGD 149
+G ++ L++EP K FY TG+
Sbjct: 743 DGQVFGALASEPLKVSDGFYGTGE 766
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.318 0.137 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 6,553,312
Number of Sequences: 37866
Number of extensions: 304249
Number of successful extensions: 563
Number of sequences better than 10.0: 16
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 5
Number of HSP's that attempted gapping in prelim test: 549
Number of HSP's gapped (non-prelim): 16
length of query: 157
length of database: 18,247,518
effective HSP length: 94
effective length of query: 63
effective length of database: 14,688,114
effective search space: 925351182
effective search space used: 925351182
T: 11
A: 40
X1: 16 ( 7.3 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.7 bits)
S2: 57 (26.6 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.