Search of human proteins with 28269681

Search of human proteins with 28269681

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|28269681 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex,
11, 14.7kDa [Homo sapiens]
         (141 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|28269681 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, ...   293   4e-80
gi|114796626 solute carrier family 16, member 8 [Homo sapiens]         32   0.23 
gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]            30   0.66 
gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]            30   0.66 
gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]            30   0.66 
gi|28912912 NK6 transcription factor related, locus 2 [Homo sapi...    28   1.9  
gi|52353344 olfactory receptor, family 7, subfamily A, member 10...    28   1.9  
gi|13128864 histone deacetylase 6 [Homo sapiens]                       28   3.3  
gi|56606061 translocase of inner mitochondrial membrane 22 homol...    28   3.3  
gi|169403959 ankyrin repeat domain 53 isoform a [Homo sapiens]         26   9.5  
gi|169403957 ankyrin repeat domain 53 isoform b [Homo sapiens]         26   9.5  

>gi|28269681 NADH dehydrogenase (ubiquinone) 1 alpha subcomplex, 11,
           14.7kDa [Homo sapiens]
          Length = 141

 Score =  293 bits (749), Expect = 4e-80
 Identities = 141/141 (100%), Positives = 141/141 (100%)

Query: 1   MAPKVFRQYWDIPDGTDCHRKAYSTTSIASVAGLTAAAYRVTLNPPGTFLEGVAKVGQYT 60
           MAPKVFRQYWDIPDGTDCHRKAYSTTSIASVAGLTAAAYRVTLNPPGTFLEGVAKVGQYT
Sbjct: 1   MAPKVFRQYWDIPDGTDCHRKAYSTTSIASVAGLTAAAYRVTLNPPGTFLEGVAKVGQYT 60

Query: 61  FTAAAVGAVFGLTTCISAHVREKPDDPLNYFLGGCAGGLTLGARTHNYGIGAAACVYFGI 120
           FTAAAVGAVFGLTTCISAHVREKPDDPLNYFLGGCAGGLTLGARTHNYGIGAAACVYFGI
Sbjct: 61  FTAAAVGAVFGLTTCISAHVREKPDDPLNYFLGGCAGGLTLGARTHNYGIGAAACVYFGI 120

Query: 121 AASLVKMGRLEGWEVFAKPKV 141
           AASLVKMGRLEGWEVFAKPKV
Sbjct: 121 AASLVKMGRLEGWEVFAKPKV 141


>gi|114796626 solute carrier family 16, member 8 [Homo sapiens]
          Length = 504

 Score = 31.6 bits (70), Expect = 0.23
 Identities = 36/128 (28%), Positives = 49/128 (38%), Gaps = 16/128 (12%)

Query: 7   RQYWDIPDGTDCHRKAYSTTSIASVAGLTAAA-----YRVTLNPPGTFLEGVAKVGQYTF 61
           R+  D+   TD     Y+ T      GL   A     Y      P T    +  +  +  
Sbjct: 240 RRLLDLAVCTDRAFAVYAVTKFLMALGLFVPAILLVNYAKDAGVPDTDAAFLLSIVGFVD 299

Query: 62  TAA--AVGAVFGLTTCISAHVREKPDDPLNYFLGGCAGGLT--LGARTHNYGIGAAACVY 117
             A  A GA+ GL        R +P  P  + L   A GLT    AR  +YG   A CV 
Sbjct: 300 IVARPACGALAGLA-------RLRPHVPYLFSLALLANGLTDLSSARARSYGALVAFCVA 352

Query: 118 FGIAASLV 125
           FG++  +V
Sbjct: 353 FGLSYGMV 360


>gi|239756845 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score = 30.0 bits (66), Expect = 0.66
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 93  GGCAGGLTLGARTHNYGIGAAACVYFGIAASLVKMGRLEGW 133
           GG  GGL  G R+     GA A    G A S+   G L+GW
Sbjct: 37  GGGGGGLGSGGRSAQRRAGAGARRPIGAAPSVGPGGELQGW 77


>gi|169211844 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 193

 Score = 30.0 bits (66), Expect = 0.66
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 93  GGCAGGLTLGARTHNYGIGAAACVYFGIAASLVKMGRLEGW 133
           GG  GGL  G R+     GA A    G A S+   G L+GW
Sbjct: 37  GGGGGGLGSGGRSAQRRAGAGARRPIGAAPSVGPGGELQGW 77


>gi|169211031 PREDICTED: hypothetical protein [Homo sapiens]
          Length = 257

 Score = 30.0 bits (66), Expect = 0.66
 Identities = 17/41 (41%), Positives = 20/41 (48%)

Query: 93  GGCAGGLTLGARTHNYGIGAAACVYFGIAASLVKMGRLEGW 133
           GG  GGL  G R+     GA A    G A S+   G L+GW
Sbjct: 37  GGGGGGLGSGGRSAQRRAGAGARRPIGAAPSVGPGGELQGW 77


>gi|28912912 NK6 transcription factor related, locus 2 [Homo
           sapiens]
          Length = 277

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 14/33 (42%), Positives = 20/33 (60%)

Query: 94  GCAGGLTLGARTHNYGIGAAACVYFGIAASLVK 126
           G AGG  LG      G+ ++A VYFG AA++ +
Sbjct: 69  GAAGGGLLGGLPRLNGLASSAGVYFGPAAAVAR 101


>gi|52353344 olfactory receptor, family 7, subfamily A, member 10
           [Homo sapiens]
          Length = 309

 Score = 28.5 bits (62), Expect = 1.9
 Identities = 19/63 (30%), Positives = 29/63 (46%), Gaps = 6/63 (9%)

Query: 63  AAAVGAVFGLTTCISAHVREKPDDPLNYFLGGCAGGLTLGARTHNYGIGAAACVYFGIAA 122
           ++A G     +TC S H+       ++ F G C G     A THN   GAAA V + +  
Sbjct: 229 SSAQGKYKAFSTCAS-HL-----SVVSLFYGTCLGVYLSSAATHNSHTGAAASVMYTVVT 282

Query: 123 SLV 125
            ++
Sbjct: 283 PML 285


>gi|13128864 histone deacetylase 6 [Homo sapiens]
          Length = 1215

 Score = 27.7 bits (60), Expect = 3.3
 Identities = 26/88 (29%), Positives = 33/88 (37%), Gaps = 11/88 (12%)

Query: 37  AAYRVTLNPPGTFLEGVAKVGQYTFTAAAVGAVFGLTTCISAHVREKPDDPLN-YFLGG- 94
           A   +T + P     G A + Q    AA  GA+ G TT   A     PD   +   +GG 
Sbjct: 901 AVVALTQDQPSEAATGGATLAQTISEAAIGGAMLGQTTSEEAVGGATPDQTTSEETVGGA 960

Query: 95  ---------CAGGLTLGARTHNYGIGAA 113
                      GG TLG  T    +G A
Sbjct: 961 ILDQTTSEDAVGGATLGQTTSEEAVGGA 988


>gi|56606061 translocase of inner mitochondrial membrane 22 homolog
           [Homo sapiens]
          Length = 194

 Score = 27.7 bits (60), Expect = 3.3
 Identities = 22/64 (34%), Positives = 27/64 (42%), Gaps = 4/64 (6%)

Query: 59  YTFTAAAVGAVFGLTTCISAHVREKPDDPLNYFLGGCAGGLTLGARTHNYGIGAAACVYF 118
           Y    A VGA+F  T C+    R    D  N  + GC  G  +G R    G+ A A    
Sbjct: 125 YAKNFAIVGAMFSCTECLIESYR-GTSDWKNSVISGCITGGAIGFRA---GLKAGAIGCG 180

Query: 119 GIAA 122
           G AA
Sbjct: 181 GFAA 184


>gi|169403959 ankyrin repeat domain 53 isoform a [Homo sapiens]
          Length = 530

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 48  TFLEGVAKVGQYTFTAAAVGAVFGLTTCISAHVREKPDD 86
           T ++  A    Y   AAAVG V  L  C++  +RE P D
Sbjct: 99  TAIDQTAIGSYYQLFAAAVGNVEWLRFCLNQSLREIPTD 137


>gi|169403957 ankyrin repeat domain 53 isoform b [Homo sapiens]
          Length = 343

 Score = 26.2 bits (56), Expect = 9.5
 Identities = 15/39 (38%), Positives = 20/39 (51%)

Query: 48  TFLEGVAKVGQYTFTAAAVGAVFGLTTCISAHVREKPDD 86
           T ++  A    Y   AAAVG V  L  C++  +RE P D
Sbjct: 99  TAIDQTAIGSYYQLFAAAVGNVEWLRFCLNQSLREIPTD 137


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.137    0.433 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 5,515,850
Number of Sequences: 37866
Number of extensions: 213636
Number of successful extensions: 389
Number of sequences better than 10.0: 11
Number of HSP's better than 10.0 without gapping: 8
Number of HSP's successfully gapped in prelim test: 3
Number of HSP's that attempted gapping in prelim test: 381
Number of HSP's gapped (non-prelim): 11
length of query: 141
length of database: 18,247,518
effective HSP length: 92
effective length of query: 49
effective length of database: 14,763,846
effective search space: 723428454
effective search space used: 723428454
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (21.9 bits)
S2: 56 (26.2 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.