Guide to the Human Genome
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Name: IDH3B Sequence: fasta or formatted (233aa) NCBI GI: 28178819
Description:

isocitrate dehydrogenase 3, beta subunit isoform c

Referenced in:

TCA Cycle

Other entries for this name:
alt prot [383aa] isocitrate dehydrogenase 3, beta subunit isoform b precursor
alt prot [385aa] isocitrate dehydrogenase 3, beta subunit isoform a precursor
Composition:

amino acid map
 Amino acid        Percentage    Count  Longest homopolymer
 A alanine             9.0         21           2
 C cysteine            3.0          7           2
 D aspartate           3.4          8           1
 E glutamate           4.3         10           2
 F phenylalanine       4.7         11           1
 G glycine             8.2         19           2
 H histidine           2.1          5           1
 I isoleucine          6.0         14           2
 K lysine              7.3         17           2
 L leucine             8.2         19           2
 M methionine          4.3         10           1
 N asparagine          4.3         10           1
 P proline             3.9          9           1
 Q glutamine           3.4          8           1
 R arginine            4.3         10           1
 S serine              6.4         15           2
 T threonine           5.2         12           3
 V valine              8.2         19           2
 W tryptophan          0.4          1           1
 Y tyrosine            3.4          8           1
Comparative genomics:

Search single species RefSeq proteins at NCBI
   H. sapiens
   M. musculus
   D. rerio
   C. intestinalis
   S. purpuratus
   D. melanogaster
   C. elegans
   A. thaliana
   S. cerevisiae
   E. coli W3110
   A. pernix K1

Search summary

comparative genomics plot

   Figure data

Additional searches of
RefSeq proteins at NCBI

   All
   Eukaryotes
   Bacteria
   Archaea
   Viruses
   Primates
   Mammals
   Vertebrates

Related human proteins:
Protein          Relative score         Description

Self-match            1.000   isocitrate dehydrogenase 3, beta subunit isoform c [... 
IDH3B                 0.881   isocitrate dehydrogenase 3, beta subunit isoform a p...
IDH3B                 0.815   isocitrate dehydrogenase 3, beta subunit isoform b p...
IDH3G                 0.457   isocitrate dehydrogenase 3 (NAD+) gamma isoform a pre...
IDH3G                 0.419   isocitrate dehydrogenase 3 (NAD+) gamma isoform b pr...
IDH3A                 0.369   isocitrate dehydrogenase 3 (NAD+) alpha precursor [Ho...
POLQ                  0.011   DNA polymerase theta 
DIAPH1                0.007   diaphanous 1 isoform 2 
ZMYM2                 0.007   zinc finger protein 198 
ZMYM2                 0.007   zinc finger protein 198 
ZMYM5                 0.007   zinc finger protein 237 isoform 3 
DIAPH1                0.007   diaphanous 1 isoform 1 
CEP192                0.007   centrosomal protein 192kDa 
Human BLASTP results (used to prepare the table)

Gene descriptions are from NCBI RefSeq. Search results were obtained with NCBI BLAST and RefSeq entries. When identical proteins are present, the self-match may not be listed first in BLASTP output. In such cases, the table above has been reordered to place it first.

See About the Figures for the scoring system used in the figure above right. The same scoring system was used in the table of BLASTP results.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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