Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Search of human proteins with 27886639
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens]
(243 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens] 491 e-139
gi|27886637 CD8b antigen isoform 4 precursor [Homo sapiens] 416 e-117
gi|27886631 CD8b antigen isoform 1 precursor [Homo sapiens] 414 e-116
gi|4826667 CD8b antigen isoform 5 precursor [Homo sapiens] 414 e-116
gi|27886635 CD8b antigen isoform 3 precursor [Homo sapiens] 414 e-116
gi|22902130 PTK7 protein tyrosine kinase 7 isoform d precursor [... 43 2e-04
gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens] 42 4e-04
gi|239753212 PREDICTED: similar to hCG1686089 [Homo sapiens] 42 6e-04
gi|239749464 PREDICTED: hypothetical protein XP_002347049 [Homo ... 42 6e-04
gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens] 41 0.001
gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens] 39 0.004
gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens] 39 0.004
gi|169217835 PREDICTED: similar to hCG2038921 [Homo sapiens] 39 0.005
gi|169207803 PREDICTED: similar to hCG2038921 [Homo sapiens] 39 0.005
gi|239750758 PREDICTED: hypothetical protein XP_002347493 [Homo ... 38 0.009
gi|30179915 paired immunoglobulin-like type 2 receptor beta isof... 37 0.016
gi|30179911 paired immunoglobulin-like type 2 receptor beta isof... 37 0.016
gi|51317373 netrin-G1 ligand [Homo sapiens] 37 0.016
gi|239749273 PREDICTED: similar to hCG2039484 [Homo sapiens] 37 0.020
gi|15826840 PTK7 protein tyrosine kinase 7 isoform a precursor [... 37 0.020
gi|22902128 PTK7 protein tyrosine kinase 7 isoform c precursor [... 37 0.020
gi|22902126 PTK7 protein tyrosine kinase 7 isoform b precursor [... 37 0.020
gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens] 36 0.035
gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo ... 36 0.035
gi|144953878 signal-regulatory protein beta 1 isoform 2 precurso... 36 0.035
gi|239754744 PREDICTED: similar to hCG2043257 [Homo sapiens] 35 0.045
gi|209529703 signal-regulatory protein beta 1 isoform 3 precurso... 35 0.059
gi|157694489 immunoglobulin superfamily, member 2 [Homo sapiens] 35 0.059
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens] 35 0.059
gi|144953876 signal-regulatory protein beta 1 isoform 1 precurso... 35 0.077
>gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens]
Length = 243
Score = 491 bits (1263), Expect = e-139
Identities = 243/243 (100%), Positives = 243/243 (100%)
Query: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
Sbjct: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
Query: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
Sbjct: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
Query: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
Query: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI 240
LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
Sbjct: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI 240
Query: 241 LKT 243
LKT
Sbjct: 241 LKT 243
>gi|27886637 CD8b antigen isoform 4 precursor [Homo sapiens]
Length = 213
Score = 416 bits (1070), Expect = e-117
Identities = 213/243 (87%), Positives = 213/243 (87%), Gaps = 30/243 (12%)
Query: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
Sbjct: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
Query: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
Sbjct: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
Query: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG--------------- 165
Query: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI 240
RRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
Sbjct: 166 ---------------RRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI 210
Query: 241 LKT 243
LKT
Sbjct: 211 LKT 213
>gi|27886631 CD8b antigen isoform 1 precursor [Homo sapiens]
Length = 246
Score = 414 bits (1063), Expect = e-116
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
Sbjct: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
Query: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
Sbjct: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
Query: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
Query: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207
LVLLVSLGVAIHLCCRRRRARLRFMKQ
Sbjct: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207
>gi|4826667 CD8b antigen isoform 5 precursor [Homo sapiens]
Length = 210
Score = 414 bits (1063), Expect = e-116
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
Sbjct: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
Query: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
Sbjct: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
Query: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
Query: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207
LVLLVSLGVAIHLCCRRRRARLRFMKQ
Sbjct: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207
>gi|27886635 CD8b antigen isoform 3 precursor [Homo sapiens]
Length = 221
Score = 414 bits (1063), Expect = e-116
Identities = 207/207 (100%), Positives = 207/207 (100%)
Query: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
Sbjct: 1 MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
Query: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
Sbjct: 61 PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
Query: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
Query: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207
LVLLVSLGVAIHLCCRRRRARLRFMKQ
Sbjct: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207
>gi|22902130 PTK7 protein tyrosine kinase 7 isoform d precursor
[Homo sapiens]
Length = 1014
Score = 43.1 bits (100), Expect = 2e-04
Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 25/158 (15%)
Query: 77 KGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVD 136
K TI E + + + + L+ V +D+G Y C+ P+ QL+V
Sbjct: 531 KPTIKWERADGSSLPEWVTDNAGTLHFARVTRDDAGNYTCIASNGPQGQIRAHVQLTVAV 590
Query: 137 FLPTTAQPTKKSTLKKRVCRL-----------------PRPETQKGPLCSP-----ITLG 174
F+ +P + + + L P PE +GP P T+G
Sbjct: 591 FITFKVEPERTTVYQGHTALLQCEAQGDPKPLIQWKDKPVPEESEGPGSPPPYKMIQTIG 650
Query: 175 LLV-AGVLVLLVSLGVAIHLCCRRRRARLRFMKQPQGE 211
L V A V ++ LG+ + C++R R KQP+GE
Sbjct: 651 LSVGAAVAYIIAVLGLMFY--CKKRCKAKRLQKQPEGE 686
>gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens]
Length = 157
Score = 42.4 bits (98), Expect = 4e-04
Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 13/102 (12%)
Query: 17 HGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQR--QAPSSDSHHEFLALWD 74
HG V+ Q+PA + + + LSC A S+S+ + W +Q+ QAP L
Sbjct: 24 HGEIVMTQSPATLSLSPGERATLSCRASQSVSSSYLSWYQQKPGQAP------RLLIYGA 77
Query: 75 SAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFC 116
S + T + + + F L ++S++PED +Y+C
Sbjct: 78 STRAT-----GIPARFSGSGSGTDFTLTISSLQPEDFAVYYC 114
>gi|239753212 PREDICTED: similar to hCG1686089 [Homo sapiens]
Length = 152
Score = 41.6 bits (96), Expect = 6e-04
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 4 RLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQ--AP 61
+L LL L G VL Q+PA + + + LSC A S+S+ + W +Q+ AP
Sbjct: 6 QLLFLLLLWLPDTTGEIVLTQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQKPGLAP 65
Query: 62 S---SDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMI 118
D+ + D G+ G + F L ++ ++PED +Y+C
Sbjct: 66 RLLIYDASSRATGIPDRFSGSGSGTD--------------FTLTISRLEPEDFAVYYCQQ 111
Query: 119 VGS 121
GS
Sbjct: 112 YGS 114
>gi|239749464 PREDICTED: hypothetical protein XP_002347049 [Homo
sapiens]
Length = 152
Score = 41.6 bits (96), Expect = 6e-04
Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 19/123 (15%)
Query: 4 RLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQ--AP 61
+L LL L G VL Q+PA + + + LSC A S+S+ + W +Q+ AP
Sbjct: 6 QLLFLLLLWLPDTTGEIVLTQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQKPGLAP 65
Query: 62 S---SDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMI 118
D+ + D G+ G + F L ++ ++PED +Y+C
Sbjct: 66 RLLIYDASSRATGIPDRFSGSGSGTD--------------FTLTISRLEPEDFAVYYCQQ 111
Query: 119 VGS 121
GS
Sbjct: 112 YGS 114
>gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens]
Length = 151
Score = 40.8 bits (94), Expect = 0.001
Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 13/115 (11%)
Query: 4 RLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQR--QAP 61
+L LL L G V+ Q+PA + + + LSC A S+S+ + W +Q+ QAP
Sbjct: 6 QLLFLLLLWLPDTTGEIVMTQSPATLSLSPGERATLSCRASQSVSSSYLSWYQQKPGQAP 65
Query: 62 SSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFC 116
L S + T + + + F L ++S++PED +Y+C
Sbjct: 66 ------RLLIYGASTRAT-----GIPARFSGSGSGTDFTLTISSLQPEDFAVYYC 109
>gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]
Length = 230
Score = 38.9 bits (89), Expect = 0.004
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 20 SVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGT 79
S + Q+P +I + V + C + N+ W ++ D + + L L KG
Sbjct: 45 SRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM-----DENPQQLKL---EKGR 96
Query: 80 IHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM--IVGSPELTFGKGTQLSVVDF 137
+ EE + E +A L + ++ ED+GIYFC + E+ G GT+L V+ F
Sbjct: 97 M--EESQNESLAT--------LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 146
Query: 138 LPTTAQPTKKSTLK 151
T AQ +++TLK
Sbjct: 147 -STLAQLKQRNTLK 159
>gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens]
Length = 229
Score = 38.9 bits (89), Expect = 0.004
Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)
Query: 20 SVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGT 79
S + Q+P +I + V + C + N+ W ++ D + + L L KG
Sbjct: 44 SRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM-----DENPQQLKL---EKGR 95
Query: 80 IHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM--IVGSPELTFGKGTQLSVVDF 137
+ EE + E +A L + ++ ED+GIYFC + E+ G GT+L V+ F
Sbjct: 96 M--EESQNESLAT--------LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 145
Query: 138 LPTTAQPTKKSTLK 151
T AQ +++TLK
Sbjct: 146 -STLAQLKQRNTLK 158
>gi|169217835 PREDICTED: similar to hCG2038921 [Homo sapiens]
Length = 120
Score = 38.5 bits (88), Expect = 0.005
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 7 LLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAK-ISLSNMRIYWLRQRQAPSSDS 65
LLL A T H L Q+ A +K + V +SC+ + ++ ++W++Q AP
Sbjct: 8 LLLVAAATGTHAEVQLVQSGAEVK-KPGATVKISCKVSGYTFTDYYMHWVQQ--APGKGL 64
Query: 66 HHEFLALWDSAKG-TIHGEEVEQEKIAVFRDASR--FILNLTSVKPEDSGIYFC 116
E++ L D G TI+ E+ Q ++ + D S + L+S++ ED+ +Y+C
Sbjct: 65 --EWMGLVDPEDGETIYAEKF-QGRVTITADTSTDTAYMELSSLRSEDTAVYYC 115
>gi|169207803 PREDICTED: similar to hCG2038921 [Homo sapiens]
Length = 120
Score = 38.5 bits (88), Expect = 0.005
Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 7 LLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAK-ISLSNMRIYWLRQRQAPSSDS 65
LLL A T H L Q+ A +K + V +SC+ + ++ ++W++Q AP
Sbjct: 8 LLLVAAATGTHAEVQLVQSGAEVK-KPGATVKISCKVSGYTFTDYYMHWVQQ--APGKGL 64
Query: 66 HHEFLALWDSAKG-TIHGEEVEQEKIAVFRDASR--FILNLTSVKPEDSGIYFC 116
E++ L D G TI+ E+ Q ++ + D S + L+S++ ED+ +Y+C
Sbjct: 65 --EWMGLVDPEDGETIYAEKF-QGRVTITADTSTDTAYMELSSLRSEDTAVYYC 115
>gi|239750758 PREDICTED: hypothetical protein XP_002347493 [Homo
sapiens]
Length = 120
Score = 37.7 bits (86), Expect = 0.009
Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 10/114 (8%)
Query: 7 LLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAK-ISLSNMRIYWLRQRQAPSSDS 65
L L A T H L Q+ A +K + V +SC+ +L+ + ++W+RQ AP
Sbjct: 8 LFLVAAATGTHAQVQLVQSGAEVK-KPGASVKVSCKVSGYTLTELSMHWVRQ--APGKGL 64
Query: 66 HHEFLALWDSAKG-TIHGEEVEQEKIAVFRDASR--FILNLTSVKPEDSGIYFC 116
E++ +D G TI+ ++ Q ++ + D S + L+S++ ED+ +Y+C
Sbjct: 65 --EWMGGFDPEDGETIYAQKF-QGRVTMTEDTSTDTAYMELSSLRSEDTAVYYC 115
>gi|30179915 paired immunoglobulin-like type 2 receptor beta isoform
a precursor [Homo sapiens]
Length = 227
Score = 37.0 bits (84), Expect = 0.016
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 18/161 (11%)
Query: 49 NMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKP 108
N+RI W R H + + + +IH + V + + L +++++
Sbjct: 66 NVRISWRR--------GHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRK 117
Query: 109 EDSGIYFCMI------VGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLP---- 158
ED +YFC + G +L KGT+L++ + TT ST R+
Sbjct: 118 EDQSVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTIAGLRVTESKG 177
Query: 159 RPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRR 199
E+ L + I + L VA + +++ L + L RRR+
Sbjct: 178 HSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRK 218
>gi|30179911 paired immunoglobulin-like type 2 receptor beta isoform
a precursor [Homo sapiens]
Length = 227
Score = 37.0 bits (84), Expect = 0.016
Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 18/161 (11%)
Query: 49 NMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKP 108
N+RI W R H + + + +IH + V + + L +++++
Sbjct: 66 NVRISWRR--------GHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRK 117
Query: 109 EDSGIYFCMI------VGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLP---- 158
ED +YFC + G +L KGT+L++ + TT ST R+
Sbjct: 118 EDQSVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTIAGLRVTESKG 177
Query: 159 RPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRR 199
E+ L + I + L VA + +++ L + L RRR+
Sbjct: 178 HSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRK 218
>gi|51317373 netrin-G1 ligand [Homo sapiens]
Length = 640
Score = 37.0 bits (84), Expect = 0.016
Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 24/110 (21%)
Query: 21 VLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGTI 80
V+ + PA + V L C A SL+++ W + GT+
Sbjct: 355 VIVEPPADLNVTEGMAAELKCRASTSLTSVS---------------------WITPNGTV 393
Query: 81 HGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGT 130
+ +IAV D + LN T+V +D+G+Y CM+ S T T
Sbjct: 394 MTHGAYKVRIAVLSDGT---LNFTNVTVQDTGMYTCMVSNSVGNTTASAT 440
>gi|239749273 PREDICTED: similar to hCG2039484 [Homo sapiens]
Length = 235
Score = 36.6 bits (83), Expect = 0.020
Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)
Query: 19 NSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKG 78
N+ + QTP + ++T + + L C ++ M YW RQ H + +AKG
Sbjct: 34 NAGVTQTPKFRVLKTGQSMTLLCAQDMNHEYM--YWYRQDPGMGLRLIHYSVGEGTTAKG 91
Query: 79 TI-HGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFC 116
+ G V + K F+L L S P + +YFC
Sbjct: 92 EVPDGYNVSRLK------KQNFLLGLESAAPSQTSVYFC 124
>gi|15826840 PTK7 protein tyrosine kinase 7 isoform a precursor
[Homo sapiens]
Length = 1070
Score = 36.6 bits (83), Expect = 0.020
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 32/129 (24%)
Query: 89 KIAVFRDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVDFLPTTAQPTKKS 148
++ +F++ S L + V PEDSG Y C+ S + + L VVD
Sbjct: 640 RMHIFQNGS---LVIHDVAPEDSGRYTCIAGNSCNIKHTEAP-LYVVD------------ 683
Query: 149 TLKKRVCRLPRPETQKGPLCSPI-----TLGLLV-AGVLVLLVSLGVAIHLCCRRRRARL 202
P PE +GP P T+GL V A V ++ LG+ + C++R
Sbjct: 684 --------KPVPEESEGPGSPPPYKMIQTIGLSVGAAVAYIIAVLGLMFY--CKKRCKAK 733
Query: 203 RFMKQPQGE 211
R KQP+GE
Sbjct: 734 RLQKQPEGE 742
Score = 27.7 bits (60), Expect = 9.4
Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 10/108 (9%)
Query: 77 KGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVD 136
K TI E + + + + L+ V +D+G Y C+ P+ QL+V
Sbjct: 531 KPTIKWERADGSSLPEWVTDNAGTLHFARVTRDDAGNYTCIASNGPQGQIRAHVQLTVAV 590
Query: 137 FLPTTAQPTKKSTLKKRVCRL-------PRPETQ---KGPLCSPITLG 174
F+ +P + + + L P+P Q K + P LG
Sbjct: 591 FITFKVEPERTTVYQGHTALLQCEAQGDPKPLIQWKGKDRILDPTKLG 638
>gi|22902128 PTK7 protein tyrosine kinase 7 isoform c precursor
[Homo sapiens]
Length = 940
Score = 36.6 bits (83), Expect = 0.020
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 32/129 (24%)
Query: 89 KIAVFRDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVDFLPTTAQPTKKS 148
++ +F++ S L + V PEDSG Y C+ S + + L VVD
Sbjct: 510 RMHIFQNGS---LVIHDVAPEDSGRYTCIAGNSCNIKHTEAP-LYVVD------------ 553
Query: 149 TLKKRVCRLPRPETQKGPLCSPI-----TLGLLV-AGVLVLLVSLGVAIHLCCRRRRARL 202
P PE +GP P T+GL V A V ++ LG+ + C++R
Sbjct: 554 --------KPVPEESEGPGSPPPYKMIQTIGLSVGAAVAYIIAVLGLMFY--CKKRCKAK 603
Query: 203 RFMKQPQGE 211
R KQP+GE
Sbjct: 604 RLQKQPEGE 612
>gi|22902126 PTK7 protein tyrosine kinase 7 isoform b precursor
[Homo sapiens]
Length = 1030
Score = 36.6 bits (83), Expect = 0.020
Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 32/129 (24%)
Query: 89 KIAVFRDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVDFLPTTAQPTKKS 148
++ +F++ S L + V PEDSG Y C+ S + + L VVD
Sbjct: 600 RMHIFQNGS---LVIHDVAPEDSGRYTCIAGNSCNIKHTEAP-LYVVD------------ 643
Query: 149 TLKKRVCRLPRPETQKGPLCSPI-----TLGLLV-AGVLVLLVSLGVAIHLCCRRRRARL 202
P PE +GP P T+GL V A V ++ LG+ + C++R
Sbjct: 644 --------KPVPEESEGPGSPPPYKMIQTIGLSVGAAVAYIIAVLGLMFY--CKKRCKAK 693
Query: 203 RFMKQPQGE 211
R KQP+GE
Sbjct: 694 RLQKQPEGE 702
>gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens]
Length = 651
Score = 35.8 bits (81), Expect = 0.035
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 24 QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGE 83
Q A++ V +M L+C L I W R P + TI
Sbjct: 519 QPEAFVSVAAGEMATLNCTVTSLLPVGPIQWFRGA-CPGQKLIYSPKRCHSPRVTTIS-- 575
Query: 84 EVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM-----IVGSPELTFGKGTQLSV 134
+Q K R+++ + + ++S+ ED+G Y+CM I + E+ G GTQ+SV
Sbjct: 576 --DQRK----RNSTDYSIRISSITLEDAGTYYCMKLRRAIPANVEIKSGPGTQMSV 625
>gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo
sapiens]
Length = 651
Score = 35.8 bits (81), Expect = 0.035
Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 14/116 (12%)
Query: 24 QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGE 83
Q A++ V +M L+C L I W R P + TI
Sbjct: 519 QPEAFVSVAAGEMATLNCTVTSLLPVGPIQWFRGA-CPGQKLIYSPKRCHSPRVTTIS-- 575
Query: 84 EVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM-----IVGSPELTFGKGTQLSV 134
+Q K R+++ + + ++S+ ED+G Y+CM I + E+ G GTQ+SV
Sbjct: 576 --DQRK----RNSTDYSIRISSITLEDAGTYYCMKLRRAIPANVEIKSGPGTQMSV 625
>gi|144953878 signal-regulatory protein beta 1 isoform 2 precursor
[Homo sapiens]
Length = 181
Score = 35.8 bits (81), Expect = 0.035
Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 43/201 (21%)
Query: 5 LWLLLAAQLTVLHGNSVLQ--QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPS 62
L LL +LT + G LQ Q + V + L C + I W R A
Sbjct: 16 LMTLLLGRLTGVAGEDELQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGR 75
Query: 63 SDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIV--G 120
+++ +G H V R+ F ++++++ P D+G Y+C+ G
Sbjct: 76 E-------LIYNQKEG--HFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKG 126
Query: 121 SP---ELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLV 177
SP E G GT+LSV + PT +P+ + LL+
Sbjct: 127 SPDDVEFKSGAGTELSVRE---AALAPT-----------------------APLLVALLL 160
Query: 178 AGVLVLLVSLGVAIHLCCRRR 198
L+L+V + AI++C +++
Sbjct: 161 GPKLLLVVGVS-AIYICWKQK 180
>gi|239754744 PREDICTED: similar to hCG2043257 [Homo sapiens]
Length = 132
Score = 35.4 bits (80), Expect = 0.045
Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 7/95 (7%)
Query: 22 LQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIH 81
+ QTP Y+ + T K + L C ++ + ++YW +Q H + + KG +
Sbjct: 23 IYQTPRYLVIGTGKKITLECSQ--TMGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLS 80
Query: 82 GEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFC 116
E ++ R F L L S +P + Y C
Sbjct: 81 SEST----VSRIR-TEHFPLTLESARPSHTSQYLC 110
>gi|209529703 signal-regulatory protein beta 1 isoform 3 precursor
[Homo sapiens]
Length = 398
Score = 35.0 bits (79), Expect = 0.059
Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 18/154 (11%)
Query: 5 LWLLLAAQLTVLHGNSVLQ--QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPS 62
L LL +LT + G LQ Q I V + L C + I W R P
Sbjct: 16 LMTLLLGRLTGVAGEEELQVIQPDKSISVAAGESATLHCTVTSLIPVGPIQWFRGA-GPG 74
Query: 63 SDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIV--G 120
+ +++ +G H V R+ F + ++++ P D+G Y+C+ G
Sbjct: 75 RE------LIYNQKEG--HFPRVTTVSDLTKRNNMDFSIRISNITPADAGTYYCVKFRKG 126
Query: 121 SP---ELTFGKGTQLSV--VDFLPTTAQPTKKST 149
SP E G GT+LSV P + P ++T
Sbjct: 127 SPDHVEFKSGAGTELSVRAKPSAPVVSGPAARAT 160
>gi|157694489 immunoglobulin superfamily, member 2 [Homo sapiens]
Length = 1021
Score = 35.0 bits (79), Expect = 0.059
Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 35/171 (20%)
Query: 40 SCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASR- 98
S + +L ++ YW R+ H + L + +GEE + + +R +S
Sbjct: 838 SVGSSATLYSVMWYWNRENSGSKLLVHLQHDGLLE------YGEEGLRRHLHCYRSSSTD 891
Query: 99 FILNLTSVKPEDSGIYFCMIV-----GSPELTFGKG---TQLSVVDFLPTTAQPTKKSTL 150
F+L L V+ ED+G+Y+C + G P + +Q V+ LP+ + TL
Sbjct: 892 FVLKLHQVEMEDAGMYWCRVAEWQLHGHPSKWINQASDESQRMVLTVLPS------EPTL 945
Query: 151 KKRVCRLPRPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRRAR 201
R+C +P+ L + ++LL+ L I L C +AR
Sbjct: 946 PSRICS-----------SAPLLYFLFICPFVLLLLLL---ISLLCLYWKAR 982
>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
Length = 1489
Score = 35.0 bits (79), Expect = 0.059
Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)
Query: 164 KGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLH 223
+ PL P + L+ L+ + L + LCC+R + + P+GE SG + P
Sbjct: 61 RAPLAPPYAVVLISCSGLLAFIFLLLTC-LCCKRGDVGFKEFENPEGEDCSGEYTPPA-- 117
Query: 224 GYYSNTTTSQKLLNPWIL 241
T++SQ L + +IL
Sbjct: 118 ---EETSSSQSLPDVYIL 132
>gi|144953876 signal-regulatory protein beta 1 isoform 1 precursor
[Homo sapiens]
Length = 398
Score = 34.7 bits (78), Expect = 0.077
Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 16/137 (11%)
Query: 5 LWLLLAAQLTVLHGNSVLQ--QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPS 62
L LL +LT + G LQ Q + V + L C + I W R A
Sbjct: 16 LMTLLLGRLTGVAGEDELQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGR 75
Query: 63 SDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIV--G 120
+++ +G H V R+ F ++++++ P D+G Y+C+ G
Sbjct: 76 E-------LIYNQKEG--HFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKG 126
Query: 121 SP---ELTFGKGTQLSV 134
SP E G GT+LSV
Sbjct: 127 SPDDVEFKSGAGTELSV 143
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.322 0.135 0.413
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,520,813
Number of Sequences: 37866
Number of extensions: 423107
Number of successful extensions: 1705
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 1577
Number of HSP's gapped (non-prelim): 220
length of query: 243
length of database: 18,247,518
effective HSP length: 99
effective length of query: 144
effective length of database: 14,498,784
effective search space: 2087824896
effective search space used: 2087824896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
Home |
Table of Contents |
Search text |
Search genes |
Search sequences |
Purchase |
FAQ |
Blog |
Help
Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.