Guide to the Human Genome
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Search of human proteins with 27886639

BLASTP 2.2.11 [Jun-05-2005]


Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer, 
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), 
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs",  Nucleic Acids Res. 25:3389-3402.

Query= gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens]
         (243 letters)

Database: hs.faa 
           37,866 sequences; 18,247,518 total letters

Searching..................................................done

                                                                 Score    E
Sequences producing significant alignments:                      (bits) Value

gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens]           491   e-139
gi|27886637 CD8b antigen isoform 4 precursor [Homo sapiens]           416   e-117
gi|27886631 CD8b antigen isoform 1 precursor [Homo sapiens]           414   e-116
gi|4826667 CD8b antigen isoform 5 precursor [Homo sapiens]            414   e-116
gi|27886635 CD8b antigen isoform 3 precursor [Homo sapiens]           414   e-116
gi|22902130 PTK7 protein tyrosine kinase 7 isoform d precursor [...    43   2e-04
gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens]           42   4e-04
gi|239753212 PREDICTED: similar to hCG1686089 [Homo sapiens]           42   6e-04
gi|239749464 PREDICTED: hypothetical protein XP_002347049 [Homo ...    42   6e-04
gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens]           41   0.001
gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]           39   0.004
gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens]           39   0.004
gi|169217835 PREDICTED: similar to hCG2038921 [Homo sapiens]           39   0.005
gi|169207803 PREDICTED: similar to hCG2038921 [Homo sapiens]           39   0.005
gi|239750758 PREDICTED: hypothetical protein XP_002347493 [Homo ...    38   0.009
gi|30179915 paired immunoglobulin-like type 2 receptor beta isof...    37   0.016
gi|30179911 paired immunoglobulin-like type 2 receptor beta isof...    37   0.016
gi|51317373 netrin-G1 ligand [Homo sapiens]                            37   0.016
gi|239749273 PREDICTED: similar to hCG2039484 [Homo sapiens]           37   0.020
gi|15826840 PTK7 protein tyrosine kinase 7 isoform a precursor [...    37   0.020
gi|22902128 PTK7 protein tyrosine kinase 7 isoform c precursor [...    37   0.020
gi|22902126 PTK7 protein tyrosine kinase 7 isoform b precursor [...    37   0.020
gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens]           36   0.035
gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo ...    36   0.035
gi|144953878 signal-regulatory protein beta 1 isoform 2 precurso...    36   0.035
gi|239754744 PREDICTED: similar to hCG2043257 [Homo sapiens]           35   0.045
gi|209529703 signal-regulatory protein beta 1 isoform 3 precurso...    35   0.059
gi|157694489 immunoglobulin superfamily, member 2 [Homo sapiens]       35   0.059
gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]                    35   0.059
gi|144953876 signal-regulatory protein beta 1 isoform 1 precurso...    35   0.077

>gi|27886639 CD8b antigen isoform 2 precursor [Homo sapiens]
          Length = 243

 Score =  491 bits (1263), Expect = e-139
 Identities = 243/243 (100%), Positives = 243/243 (100%)

Query: 1   MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
           MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
Sbjct: 1   MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60

Query: 61  PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
           PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
Sbjct: 61  PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120

Query: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
           SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180

Query: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI 240
           LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
Sbjct: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI 240

Query: 241 LKT 243
           LKT
Sbjct: 241 LKT 243


>gi|27886637 CD8b antigen isoform 4 precursor [Homo sapiens]
          Length = 213

 Score =  416 bits (1070), Expect = e-117
 Identities = 213/243 (87%), Positives = 213/243 (87%), Gaps = 30/243 (12%)

Query: 1   MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
           MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
Sbjct: 1   MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60

Query: 61  PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
           PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
Sbjct: 61  PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120

Query: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
           SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG               
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKG--------------- 165

Query: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI 240
                          RRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI
Sbjct: 166 ---------------RRRRARLRFMKQPQGEGISGTFVPQCLHGYYSNTTTSQKLLNPWI 210

Query: 241 LKT 243
           LKT
Sbjct: 211 LKT 213


>gi|27886631 CD8b antigen isoform 1 precursor [Homo sapiens]
          Length = 246

 Score =  414 bits (1063), Expect = e-116
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
           MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
Sbjct: 1   MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60

Query: 61  PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
           PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
Sbjct: 61  PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120

Query: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
           SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180

Query: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207
           LVLLVSLGVAIHLCCRRRRARLRFMKQ
Sbjct: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207


>gi|4826667 CD8b antigen isoform 5 precursor [Homo sapiens]
          Length = 210

 Score =  414 bits (1063), Expect = e-116
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
           MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
Sbjct: 1   MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60

Query: 61  PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
           PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
Sbjct: 61  PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120

Query: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
           SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180

Query: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207
           LVLLVSLGVAIHLCCRRRRARLRFMKQ
Sbjct: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207


>gi|27886635 CD8b antigen isoform 3 precursor [Homo sapiens]
          Length = 221

 Score =  414 bits (1063), Expect = e-116
 Identities = 207/207 (100%), Positives = 207/207 (100%)

Query: 1   MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60
           MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA
Sbjct: 1   MRPRLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQA 60

Query: 61  PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120
           PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG
Sbjct: 61  PSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVG 120

Query: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180
           SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV
Sbjct: 121 SPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLVAGV 180

Query: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207
           LVLLVSLGVAIHLCCRRRRARLRFMKQ
Sbjct: 181 LVLLVSLGVAIHLCCRRRRARLRFMKQ 207


>gi|22902130 PTK7 protein tyrosine kinase 7 isoform d precursor
           [Homo sapiens]
          Length = 1014

 Score = 43.1 bits (100), Expect = 2e-04
 Identities = 39/158 (24%), Positives = 63/158 (39%), Gaps = 25/158 (15%)

Query: 77  KGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVD 136
           K TI  E  +   +  +   +   L+   V  +D+G Y C+    P+       QL+V  
Sbjct: 531 KPTIKWERADGSSLPEWVTDNAGTLHFARVTRDDAGNYTCIASNGPQGQIRAHVQLTVAV 590

Query: 137 FLPTTAQPTKKSTLKKRVCRL-----------------PRPETQKGPLCSP-----ITLG 174
           F+    +P + +  +     L                 P PE  +GP   P      T+G
Sbjct: 591 FITFKVEPERTTVYQGHTALLQCEAQGDPKPLIQWKDKPVPEESEGPGSPPPYKMIQTIG 650

Query: 175 LLV-AGVLVLLVSLGVAIHLCCRRRRARLRFMKQPQGE 211
           L V A V  ++  LG+  +  C++R    R  KQP+GE
Sbjct: 651 LSVGAAVAYIIAVLGLMFY--CKKRCKAKRLQKQPEGE 686


>gi|239753214 PREDICTED: similar to hCG2043206 [Homo sapiens]
          Length = 157

 Score = 42.4 bits (98), Expect = 4e-04
 Identities = 28/102 (27%), Positives = 48/102 (47%), Gaps = 13/102 (12%)

Query: 17  HGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQR--QAPSSDSHHEFLALWD 74
           HG  V+ Q+PA + +   +   LSC A  S+S+  + W +Q+  QAP        L    
Sbjct: 24  HGEIVMTQSPATLSLSPGERATLSCRASQSVSSSYLSWYQQKPGQAP------RLLIYGA 77

Query: 75  SAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFC 116
           S + T         + +     + F L ++S++PED  +Y+C
Sbjct: 78  STRAT-----GIPARFSGSGSGTDFTLTISSLQPEDFAVYYC 114


>gi|239753212 PREDICTED: similar to hCG1686089 [Homo sapiens]
          Length = 152

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 19/123 (15%)

Query: 4   RLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQ--AP 61
           +L  LL   L    G  VL Q+PA + +   +   LSC A  S+S+  + W +Q+   AP
Sbjct: 6   QLLFLLLLWLPDTTGEIVLTQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQKPGLAP 65

Query: 62  S---SDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMI 118
                D+      + D   G+  G +              F L ++ ++PED  +Y+C  
Sbjct: 66  RLLIYDASSRATGIPDRFSGSGSGTD--------------FTLTISRLEPEDFAVYYCQQ 111

Query: 119 VGS 121
            GS
Sbjct: 112 YGS 114


>gi|239749464 PREDICTED: hypothetical protein XP_002347049 [Homo
           sapiens]
          Length = 152

 Score = 41.6 bits (96), Expect = 6e-04
 Identities = 33/123 (26%), Positives = 53/123 (43%), Gaps = 19/123 (15%)

Query: 4   RLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQ--AP 61
           +L  LL   L    G  VL Q+PA + +   +   LSC A  S+S+  + W +Q+   AP
Sbjct: 6   QLLFLLLLWLPDTTGEIVLTQSPATLSLSPGERATLSCGASQSVSSSYLAWYQQKPGLAP 65

Query: 62  S---SDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMI 118
                D+      + D   G+  G +              F L ++ ++PED  +Y+C  
Sbjct: 66  RLLIYDASSRATGIPDRFSGSGSGTD--------------FTLTISRLEPEDFAVYYCQQ 111

Query: 119 VGS 121
            GS
Sbjct: 112 YGS 114


>gi|169163270 PREDICTED: similar to hCG2043206 [Homo sapiens]
          Length = 151

 Score = 40.8 bits (94), Expect = 0.001
 Identities = 31/115 (26%), Positives = 52/115 (45%), Gaps = 13/115 (11%)

Query: 4   RLWLLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQR--QAP 61
           +L  LL   L    G  V+ Q+PA + +   +   LSC A  S+S+  + W +Q+  QAP
Sbjct: 6   QLLFLLLLWLPDTTGEIVMTQSPATLSLSPGERATLSCRASQSVSSSYLSWYQQKPGQAP 65

Query: 62  SSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFC 116
                   L    S + T         + +     + F L ++S++PED  +Y+C
Sbjct: 66  ------RLLIYGASTRAT-----GIPARFSGSGSGTDFTLTISSLQPEDFAVYYC 109


>gi|90193592 CD79B antigen isoform 3 precursor [Homo sapiens]
          Length = 230

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)

Query: 20  SVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGT 79
           S + Q+P +I  +    V + C    +  N+   W ++      D + + L L    KG 
Sbjct: 45  SRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM-----DENPQQLKL---EKGR 96

Query: 80  IHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM--IVGSPELTFGKGTQLSVVDF 137
           +  EE + E +A         L +  ++ ED+GIYFC      + E+  G GT+L V+ F
Sbjct: 97  M--EESQNESLAT--------LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 146

Query: 138 LPTTAQPTKKSTLK 151
             T AQ  +++TLK
Sbjct: 147 -STLAQLKQRNTLK 159


>gi|11038674 CD79B antigen isoform 1 precursor [Homo sapiens]
          Length = 229

 Score = 38.9 bits (89), Expect = 0.004
 Identities = 38/134 (28%), Positives = 63/134 (47%), Gaps = 21/134 (15%)

Query: 20  SVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGT 79
           S + Q+P +I  +    V + C    +  N+   W ++      D + + L L    KG 
Sbjct: 44  SRIWQSPRFIARKRGFTVKMHCYMNSASGNVSWLWKQEM-----DENPQQLKL---EKGR 95

Query: 80  IHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM--IVGSPELTFGKGTQLSVVDF 137
           +  EE + E +A         L +  ++ ED+GIYFC      + E+  G GT+L V+ F
Sbjct: 96  M--EESQNESLAT--------LTIQGIRFEDNGIYFCQQKCNNTSEVYQGCGTELRVMGF 145

Query: 138 LPTTAQPTKKSTLK 151
             T AQ  +++TLK
Sbjct: 146 -STLAQLKQRNTLK 158


>gi|169217835 PREDICTED: similar to hCG2038921 [Homo sapiens]
          Length = 120

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 10/114 (8%)

Query: 7   LLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAK-ISLSNMRIYWLRQRQAPSSDS 65
           LLL A  T  H    L Q+ A +K +    V +SC+    + ++  ++W++Q  AP    
Sbjct: 8   LLLVAAATGTHAEVQLVQSGAEVK-KPGATVKISCKVSGYTFTDYYMHWVQQ--APGKGL 64

Query: 66  HHEFLALWDSAKG-TIHGEEVEQEKIAVFRDASR--FILNLTSVKPEDSGIYFC 116
             E++ L D   G TI+ E+  Q ++ +  D S     + L+S++ ED+ +Y+C
Sbjct: 65  --EWMGLVDPEDGETIYAEKF-QGRVTITADTSTDTAYMELSSLRSEDTAVYYC 115


>gi|169207803 PREDICTED: similar to hCG2038921 [Homo sapiens]
          Length = 120

 Score = 38.5 bits (88), Expect = 0.005
 Identities = 33/114 (28%), Positives = 59/114 (51%), Gaps = 10/114 (8%)

Query: 7   LLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAK-ISLSNMRIYWLRQRQAPSSDS 65
           LLL A  T  H    L Q+ A +K +    V +SC+    + ++  ++W++Q  AP    
Sbjct: 8   LLLVAAATGTHAEVQLVQSGAEVK-KPGATVKISCKVSGYTFTDYYMHWVQQ--APGKGL 64

Query: 66  HHEFLALWDSAKG-TIHGEEVEQEKIAVFRDASR--FILNLTSVKPEDSGIYFC 116
             E++ L D   G TI+ E+  Q ++ +  D S     + L+S++ ED+ +Y+C
Sbjct: 65  --EWMGLVDPEDGETIYAEKF-QGRVTITADTSTDTAYMELSSLRSEDTAVYYC 115


>gi|239750758 PREDICTED: hypothetical protein XP_002347493 [Homo
           sapiens]
          Length = 120

 Score = 37.7 bits (86), Expect = 0.009
 Identities = 32/114 (28%), Positives = 59/114 (51%), Gaps = 10/114 (8%)

Query: 7   LLLAAQLTVLHGNSVLQQTPAYIKVQTNKMVMLSCEAK-ISLSNMRIYWLRQRQAPSSDS 65
           L L A  T  H    L Q+ A +K +    V +SC+    +L+ + ++W+RQ  AP    
Sbjct: 8   LFLVAAATGTHAQVQLVQSGAEVK-KPGASVKVSCKVSGYTLTELSMHWVRQ--APGKGL 64

Query: 66  HHEFLALWDSAKG-TIHGEEVEQEKIAVFRDASR--FILNLTSVKPEDSGIYFC 116
             E++  +D   G TI+ ++  Q ++ +  D S     + L+S++ ED+ +Y+C
Sbjct: 65  --EWMGGFDPEDGETIYAQKF-QGRVTMTEDTSTDTAYMELSSLRSEDTAVYYC 115


>gi|30179915 paired immunoglobulin-like type 2 receptor beta isoform
           a precursor [Homo sapiens]
          Length = 227

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 18/161 (11%)

Query: 49  NMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKP 108
           N+RI W R         H    + + +   +IH + V +  +          L +++++ 
Sbjct: 66  NVRISWRR--------GHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRK 117

Query: 109 EDSGIYFCMI------VGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLP---- 158
           ED  +YFC +       G  +L   KGT+L++   + TT      ST      R+     
Sbjct: 118 EDQSVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTIAGLRVTESKG 177

Query: 159 RPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRR 199
             E+    L + I + L VA +  +++ L   + L  RRR+
Sbjct: 178 HSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRK 218


>gi|30179911 paired immunoglobulin-like type 2 receptor beta isoform
           a precursor [Homo sapiens]
          Length = 227

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 37/161 (22%), Positives = 67/161 (41%), Gaps = 18/161 (11%)

Query: 49  NMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKP 108
           N+RI W R         H    + + +   +IH + V +  +          L +++++ 
Sbjct: 66  NVRISWRR--------GHFHGQSFYSTRPPSIHKDYVNRLFLNWTEGQESGFLRISNLRK 117

Query: 109 EDSGIYFCMI------VGSPELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLP---- 158
           ED  +YFC +       G  +L   KGT+L++   + TT      ST      R+     
Sbjct: 118 EDQSVYFCRVELDTRRSGRQQLQSIKGTKLTITQAVTTTTTWRPSSTTTIAGLRVTESKG 177

Query: 159 RPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRR 199
             E+    L + I + L VA +  +++ L   + L  RRR+
Sbjct: 178 HSESWHLSLDTAIRVALAVAVLKTVILGLLCLLLLWWRRRK 218


>gi|51317373 netrin-G1 ligand [Homo sapiens]
          Length = 640

 Score = 37.0 bits (84), Expect = 0.016
 Identities = 28/110 (25%), Positives = 44/110 (40%), Gaps = 24/110 (21%)

Query: 21  VLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGTI 80
           V+ + PA + V       L C A  SL+++                      W +  GT+
Sbjct: 355 VIVEPPADLNVTEGMAAELKCRASTSLTSVS---------------------WITPNGTV 393

Query: 81  HGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGT 130
                 + +IAV  D +   LN T+V  +D+G+Y CM+  S   T    T
Sbjct: 394 MTHGAYKVRIAVLSDGT---LNFTNVTVQDTGMYTCMVSNSVGNTTASAT 440


>gi|239749273 PREDICTED: similar to hCG2039484 [Homo sapiens]
          Length = 235

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 27/99 (27%), Positives = 43/99 (43%), Gaps = 9/99 (9%)

Query: 19  NSVLQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKG 78
           N+ + QTP +  ++T + + L C   ++   M  YW RQ         H  +    +AKG
Sbjct: 34  NAGVTQTPKFRVLKTGQSMTLLCAQDMNHEYM--YWYRQDPGMGLRLIHYSVGEGTTAKG 91

Query: 79  TI-HGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFC 116
            +  G  V + K         F+L L S  P  + +YFC
Sbjct: 92  EVPDGYNVSRLK------KQNFLLGLESAAPSQTSVYFC 124


>gi|15826840 PTK7 protein tyrosine kinase 7 isoform a precursor
           [Homo sapiens]
          Length = 1070

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 32/129 (24%)

Query: 89  KIAVFRDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVDFLPTTAQPTKKS 148
           ++ +F++ S   L +  V PEDSG Y C+   S  +   +   L VVD            
Sbjct: 640 RMHIFQNGS---LVIHDVAPEDSGRYTCIAGNSCNIKHTEAP-LYVVD------------ 683

Query: 149 TLKKRVCRLPRPETQKGPLCSPI-----TLGLLV-AGVLVLLVSLGVAIHLCCRRRRARL 202
                    P PE  +GP   P      T+GL V A V  ++  LG+  +  C++R    
Sbjct: 684 --------KPVPEESEGPGSPPPYKMIQTIGLSVGAAVAYIIAVLGLMFY--CKKRCKAK 733

Query: 203 RFMKQPQGE 211
           R  KQP+GE
Sbjct: 734 RLQKQPEGE 742



 Score = 27.7 bits (60), Expect = 9.4
 Identities = 24/108 (22%), Positives = 41/108 (37%), Gaps = 10/108 (9%)

Query: 77  KGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVD 136
           K TI  E  +   +  +   +   L+   V  +D+G Y C+    P+       QL+V  
Sbjct: 531 KPTIKWERADGSSLPEWVTDNAGTLHFARVTRDDAGNYTCIASNGPQGQIRAHVQLTVAV 590

Query: 137 FLPTTAQPTKKSTLKKRVCRL-------PRPETQ---KGPLCSPITLG 174
           F+    +P + +  +     L       P+P  Q   K  +  P  LG
Sbjct: 591 FITFKVEPERTTVYQGHTALLQCEAQGDPKPLIQWKGKDRILDPTKLG 638


>gi|22902128 PTK7 protein tyrosine kinase 7 isoform c precursor
           [Homo sapiens]
          Length = 940

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 32/129 (24%)

Query: 89  KIAVFRDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVDFLPTTAQPTKKS 148
           ++ +F++ S   L +  V PEDSG Y C+   S  +   +   L VVD            
Sbjct: 510 RMHIFQNGS---LVIHDVAPEDSGRYTCIAGNSCNIKHTEAP-LYVVD------------ 553

Query: 149 TLKKRVCRLPRPETQKGPLCSPI-----TLGLLV-AGVLVLLVSLGVAIHLCCRRRRARL 202
                    P PE  +GP   P      T+GL V A V  ++  LG+  +  C++R    
Sbjct: 554 --------KPVPEESEGPGSPPPYKMIQTIGLSVGAAVAYIIAVLGLMFY--CKKRCKAK 603

Query: 203 RFMKQPQGE 211
           R  KQP+GE
Sbjct: 604 RLQKQPEGE 612


>gi|22902126 PTK7 protein tyrosine kinase 7 isoform b precursor
           [Homo sapiens]
          Length = 1030

 Score = 36.6 bits (83), Expect = 0.020
 Identities = 38/129 (29%), Positives = 56/129 (43%), Gaps = 32/129 (24%)

Query: 89  KIAVFRDASRFILNLTSVKPEDSGIYFCMIVGSPELTFGKGTQLSVVDFLPTTAQPTKKS 148
           ++ +F++ S   L +  V PEDSG Y C+   S  +   +   L VVD            
Sbjct: 600 RMHIFQNGS---LVIHDVAPEDSGRYTCIAGNSCNIKHTEAP-LYVVD------------ 643

Query: 149 TLKKRVCRLPRPETQKGPLCSPI-----TLGLLV-AGVLVLLVSLGVAIHLCCRRRRARL 202
                    P PE  +GP   P      T+GL V A V  ++  LG+  +  C++R    
Sbjct: 644 --------KPVPEESEGPGSPPPYKMIQTIGLSVGAAVAYIIAVLGLMFY--CKKRCKAK 693

Query: 203 RFMKQPQGE 211
           R  KQP+GE
Sbjct: 694 RLQKQPEGE 702


>gi|239757417 PREDICTED: similar to hCG2019710 [Homo sapiens]
          Length = 651

 Score = 35.8 bits (81), Expect = 0.035
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 14/116 (12%)

Query: 24  QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGE 83
           Q  A++ V   +M  L+C     L    I W R    P     +           TI   
Sbjct: 519 QPEAFVSVAAGEMATLNCTVTSLLPVGPIQWFRGA-CPGQKLIYSPKRCHSPRVTTIS-- 575

Query: 84  EVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM-----IVGSPELTFGKGTQLSV 134
             +Q K    R+++ + + ++S+  ED+G Y+CM     I  + E+  G GTQ+SV
Sbjct: 576 --DQRK----RNSTDYSIRISSITLEDAGTYYCMKLRRAIPANVEIKSGPGTQMSV 625


>gi|239751934 PREDICTED: hypothetical protein XP_002348043 [Homo
           sapiens]
          Length = 651

 Score = 35.8 bits (81), Expect = 0.035
 Identities = 31/116 (26%), Positives = 50/116 (43%), Gaps = 14/116 (12%)

Query: 24  QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGE 83
           Q  A++ V   +M  L+C     L    I W R    P     +           TI   
Sbjct: 519 QPEAFVSVAAGEMATLNCTVTSLLPVGPIQWFRGA-CPGQKLIYSPKRCHSPRVTTIS-- 575

Query: 84  EVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCM-----IVGSPELTFGKGTQLSV 134
             +Q K    R+++ + + ++S+  ED+G Y+CM     I  + E+  G GTQ+SV
Sbjct: 576 --DQRK----RNSTDYSIRISSITLEDAGTYYCMKLRRAIPANVEIKSGPGTQMSV 625


>gi|144953878 signal-regulatory protein beta 1 isoform 2 precursor
           [Homo sapiens]
          Length = 181

 Score = 35.8 bits (81), Expect = 0.035
 Identities = 47/201 (23%), Positives = 80/201 (39%), Gaps = 43/201 (21%)

Query: 5   LWLLLAAQLTVLHGNSVLQ--QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPS 62
           L  LL  +LT + G   LQ  Q    + V   +   L C     +    I W R   A  
Sbjct: 16  LMTLLLGRLTGVAGEDELQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGR 75

Query: 63  SDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIV--G 120
                    +++  +G  H   V        R+   F ++++++ P D+G Y+C+    G
Sbjct: 76  E-------LIYNQKEG--HFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKG 126

Query: 121 SP---ELTFGKGTQLSVVDFLPTTAQPTKKSTLKKRVCRLPRPETQKGPLCSPITLGLLV 177
           SP   E   G GT+LSV +       PT                       +P+ + LL+
Sbjct: 127 SPDDVEFKSGAGTELSVRE---AALAPT-----------------------APLLVALLL 160

Query: 178 AGVLVLLVSLGVAIHLCCRRR 198
              L+L+V +  AI++C +++
Sbjct: 161 GPKLLLVVGVS-AIYICWKQK 180


>gi|239754744 PREDICTED: similar to hCG2043257 [Homo sapiens]
          Length = 132

 Score = 35.4 bits (80), Expect = 0.045
 Identities = 23/95 (24%), Positives = 40/95 (42%), Gaps = 7/95 (7%)

Query: 22  LQQTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIH 81
           + QTP Y+ + T K + L C    ++ + ++YW +Q         H    +  + KG + 
Sbjct: 23  IYQTPRYLVIGTGKKITLECSQ--TMGHDKMYWYQQDPGMELHLIHYSYGVNSTEKGDLS 80

Query: 82  GEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFC 116
            E      ++  R    F L L S +P  +  Y C
Sbjct: 81  SEST----VSRIR-TEHFPLTLESARPSHTSQYLC 110


>gi|209529703 signal-regulatory protein beta 1 isoform 3 precursor
           [Homo sapiens]
          Length = 398

 Score = 35.0 bits (79), Expect = 0.059
 Identities = 40/154 (25%), Positives = 62/154 (40%), Gaps = 18/154 (11%)

Query: 5   LWLLLAAQLTVLHGNSVLQ--QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPS 62
           L  LL  +LT + G   LQ  Q    I V   +   L C     +    I W R    P 
Sbjct: 16  LMTLLLGRLTGVAGEEELQVIQPDKSISVAAGESATLHCTVTSLIPVGPIQWFRGA-GPG 74

Query: 63  SDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIV--G 120
            +       +++  +G  H   V        R+   F + ++++ P D+G Y+C+    G
Sbjct: 75  RE------LIYNQKEG--HFPRVTTVSDLTKRNNMDFSIRISNITPADAGTYYCVKFRKG 126

Query: 121 SP---ELTFGKGTQLSV--VDFLPTTAQPTKKST 149
           SP   E   G GT+LSV      P  + P  ++T
Sbjct: 127 SPDHVEFKSGAGTELSVRAKPSAPVVSGPAARAT 160


>gi|157694489 immunoglobulin superfamily, member 2 [Homo sapiens]
          Length = 1021

 Score = 35.0 bits (79), Expect = 0.059
 Identities = 41/171 (23%), Positives = 72/171 (42%), Gaps = 35/171 (20%)

Query: 40  SCEAKISLSNMRIYWLRQRQAPSSDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASR- 98
           S  +  +L ++  YW R+        H +   L +      +GEE  +  +  +R +S  
Sbjct: 838 SVGSSATLYSVMWYWNRENSGSKLLVHLQHDGLLE------YGEEGLRRHLHCYRSSSTD 891

Query: 99  FILNLTSVKPEDSGIYFCMIV-----GSPELTFGKG---TQLSVVDFLPTTAQPTKKSTL 150
           F+L L  V+ ED+G+Y+C +      G P     +    +Q  V+  LP+      + TL
Sbjct: 892 FVLKLHQVEMEDAGMYWCRVAEWQLHGHPSKWINQASDESQRMVLTVLPS------EPTL 945

Query: 151 KKRVCRLPRPETQKGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRRAR 201
             R+C             +P+   L +   ++LL+ L   I L C   +AR
Sbjct: 946 PSRICS-----------SAPLLYFLFICPFVLLLLLL---ISLLCLYWKAR 982


>gi|122937267 lemur tyrosine kinase 3 [Homo sapiens]
          Length = 1489

 Score = 35.0 bits (79), Expect = 0.059
 Identities = 22/78 (28%), Positives = 37/78 (47%), Gaps = 6/78 (7%)

Query: 164 KGPLCSPITLGLLVAGVLVLLVSLGVAIHLCCRRRRARLRFMKQPQGEGISGTFVPQCLH 223
           + PL  P  + L+    L+  + L +   LCC+R     +  + P+GE  SG + P    
Sbjct: 61  RAPLAPPYAVVLISCSGLLAFIFLLLTC-LCCKRGDVGFKEFENPEGEDCSGEYTPPA-- 117

Query: 224 GYYSNTTTSQKLLNPWIL 241
                T++SQ L + +IL
Sbjct: 118 ---EETSSSQSLPDVYIL 132


>gi|144953876 signal-regulatory protein beta 1 isoform 1 precursor
           [Homo sapiens]
          Length = 398

 Score = 34.7 bits (78), Expect = 0.077
 Identities = 36/137 (26%), Positives = 56/137 (40%), Gaps = 16/137 (11%)

Query: 5   LWLLLAAQLTVLHGNSVLQ--QTPAYIKVQTNKMVMLSCEAKISLSNMRIYWLRQRQAPS 62
           L  LL  +LT + G   LQ  Q    + V   +   L C     +    I W R   A  
Sbjct: 16  LMTLLLGRLTGVAGEDELQVIQPEKSVSVAAGESATLRCAMTSLIPVGPIMWFRGAGAGR 75

Query: 63  SDSHHEFLALWDSAKGTIHGEEVEQEKIAVFRDASRFILNLTSVKPEDSGIYFCMIV--G 120
                    +++  +G  H   V        R+   F ++++++ P D+G Y+C+    G
Sbjct: 76  E-------LIYNQKEG--HFPRVTTVSELTKRNNLDFSISISNITPADAGTYYCVKFRKG 126

Query: 121 SP---ELTFGKGTQLSV 134
           SP   E   G GT+LSV
Sbjct: 127 SPDDVEFKSGAGTELSV 143


  Database: hs.faa
    Posted date:  Aug 4, 2009  4:42 PM
  Number of letters in database: 18,247,518
  Number of sequences in database:  37,866
  
Lambda     K      H
   0.322    0.135    0.413 

Gapped
Lambda     K      H
   0.267   0.0410    0.140 


Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 9,520,813
Number of Sequences: 37866
Number of extensions: 423107
Number of successful extensions: 1705
Number of sequences better than 10.0: 30
Number of HSP's better than 10.0 without gapping: 42
Number of HSP's successfully gapped in prelim test: 97
Number of HSP's that attempted gapping in prelim test: 1577
Number of HSP's gapped (non-prelim): 220
length of query: 243
length of database: 18,247,518
effective HSP length: 99
effective length of query: 144
effective length of database: 14,498,784
effective search space: 2087824896
effective search space used: 2087824896
T: 11
A: 40
X1: 16 ( 7.4 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 41 (22.0 bits)
S2: 60 (27.7 bits)

Search results were obtained with NCBI BLAST and RefSeq entries.


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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.

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