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Search of human proteins with 26051275
BLASTP 2.2.11 [Jun-05-2005]
Reference: Altschul, Stephen F., Thomas L. Madden, Alejandro A. Schaffer,
Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997),
"Gapped BLAST and PSI-BLAST: a new generation of protein database search
programs", Nucleic Acids Res. 25:3389-3402.
Query= gi|26051275 calcium-activated potassium channel beta 4 subunit
[Homo sapiens]
(210 letters)
Database: hs.faa
37,866 sequences; 18,247,518 total letters
Searching..................................................done
Score E
Sequences producing significant alignments: (bits) Value
gi|26051275 calcium-activated potassium channel beta 4 subunit [... 437 e-123
gi|25952095 calcium-activated potassium channel beta 3 subunit i... 139 2e-33
gi|25952105 calcium-activated potassium channel beta 3 subunit i... 139 2e-33
gi|25952102 calcium-activated potassium channel beta 3 subunit i... 139 2e-33
gi|25952099 calcium-activated potassium channel beta 3 subunit i... 139 2e-33
gi|31317295 calcium-activated potassium channel beta 2 subunit [... 122 2e-28
gi|5031823 calcium-activated potassium channel beta 2 subunit [H... 122 2e-28
gi|4758626 potassium large conductance calcium-activated channel... 49 2e-06
gi|212549782 caspase 8 associated protein 2 [Homo sapiens] 31 0.87
gi|6912288 caspase 8 associated protein 2 [Homo sapiens] 31 0.87
gi|212549532 caspase 8 associated protein 2 [Homo sapiens] 31 0.87
gi|161019170 mucin 5AC [Homo sapiens] 29 2.5
gi|169214831 PREDICTED: zinc finger protein 840 [Homo sapiens] 29 2.5
gi|169215032 PREDICTED: zinc finger protein 840 [Homo sapiens] 29 2.5
gi|169214556 PREDICTED: zinc finger protein 840 [Homo sapiens] 29 2.5
gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens] 29 2.5
gi|236463300 hypothetical protein LOC79846 isoform 2 [Homo sapiens] 28 4.3
gi|236463164 hypothetical protein LOC79846 isoform 1 [Homo sapiens] 28 4.3
gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens] 28 7.4
gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens] 28 7.4
gi|241666462 tuberous sclerosis 1 protein isoform 3 [Homo sapiens] 28 7.4
gi|153791244 hypothetical protein LOC55237 [Homo sapiens] 28 7.4
gi|154354998 inositol 1,4,5-triphosphate receptor, type 1 isofor... 27 9.6
gi|154354996 inositol 1,4,5-triphosphate receptor, type 1 isofor... 27 9.6
gi|9506745 urotensin 2 receptor [Homo sapiens] 27 9.6
gi|154090976 sterile alpha and TIR motif containing 1 [Homo sapi... 27 9.6
>gi|26051275 calcium-activated potassium channel beta 4 subunit
[Homo sapiens]
Length = 210
Score = 437 bits (1123), Expect = e-123
Identities = 210/210 (100%), Positives = 210/210 (100%)
Query: 1 MAKLRVAYEYTEAEDKSIRLGLFLIISGVVSLFIFGFCWLSPALQDLQATEANCTVLSVQ 60
MAKLRVAYEYTEAEDKSIRLGLFLIISGVVSLFIFGFCWLSPALQDLQATEANCTVLSVQ
Sbjct: 1 MAKLRVAYEYTEAEDKSIRLGLFLIISGVVSLFIFGFCWLSPALQDLQATEANCTVLSVQ 60
Query: 61 QIGEVFECTFTCGADCRGTSQYPCVQVYVNNSESNSRALLHSDEHQLLTNPKCSYIPPCK 120
QIGEVFECTFTCGADCRGTSQYPCVQVYVNNSESNSRALLHSDEHQLLTNPKCSYIPPCK
Sbjct: 61 QIGEVFECTFTCGADCRGTSQYPCVQVYVNNSESNSRALLHSDEHQLLTNPKCSYIPPCK 120
Query: 121 RENQKNLESVMNWQQYWKDEIGSQPFTCYFNQHQRPDDVLLHRTHDEIVLLHCFLWPLVT 180
RENQKNLESVMNWQQYWKDEIGSQPFTCYFNQHQRPDDVLLHRTHDEIVLLHCFLWPLVT
Sbjct: 121 RENQKNLESVMNWQQYWKDEIGSQPFTCYFNQHQRPDDVLLHRTHDEIVLLHCFLWPLVT 180
Query: 181 FVVGVLIVVLTICAKSLAVKAEAMKKRKFS 210
FVVGVLIVVLTICAKSLAVKAEAMKKRKFS
Sbjct: 181 FVVGVLIVVLTICAKSLAVKAEAMKKRKFS 210
>gi|25952095 calcium-activated potassium channel beta 3 subunit
isoform d [Homo sapiens]
Length = 279
Score = 139 bits (349), Expect = 2e-33
Identities = 61/189 (32%), Positives = 109/189 (57%), Gaps = 1/189 (0%)
Query: 14 EDKSIRLGLFLIISGVVSLFIFGFCWLSPALQDLQATEANCTVLSVQQIGEVFECTFTCG 73
ED+++ LG ++ V+ F+ G L P + +Q E+ CT + + + +C FTCG
Sbjct: 55 EDRAVMLGFAMMGFSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCG 114
Query: 74 ADCRGTSQYPCVQVYVNNSESNSRALLHSDEHQLLTNPKCSYIPPCKRENQKNLESVMNW 133
C G +YPC+QV+VN S +ALLH +E + NPKC Y P C ++ L S ++
Sbjct: 115 VHCHGQGKYPCLQVFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDI 174
Query: 134 QQYWKDEIGSQPFTCYFNQHQRPDDVLLHRTHDEIVLLHCFLWPLVTFVVGVLIVVLTIC 193
++++ + G+ PF+C+++ + +DV+L + +D++ + HC WP +T + G LIV +
Sbjct: 175 KEFFDHKNGT-PFSCFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRL 233
Query: 194 AKSLAVKAE 202
+ L++ E
Sbjct: 234 TQHLSLLCE 242
>gi|25952105 calcium-activated potassium channel beta 3 subunit
isoform c [Homo sapiens]
Length = 275
Score = 139 bits (349), Expect = 2e-33
Identities = 61/189 (32%), Positives = 109/189 (57%), Gaps = 1/189 (0%)
Query: 14 EDKSIRLGLFLIISGVVSLFIFGFCWLSPALQDLQATEANCTVLSVQQIGEVFECTFTCG 73
ED+++ LG ++ V+ F+ G L P + +Q E+ CT + + + +C FTCG
Sbjct: 51 EDRAVMLGFAMMGFSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCG 110
Query: 74 ADCRGTSQYPCVQVYVNNSESNSRALLHSDEHQLLTNPKCSYIPPCKRENQKNLESVMNW 133
C G +YPC+QV+VN S +ALLH +E + NPKC Y P C ++ L S ++
Sbjct: 111 VHCHGQGKYPCLQVFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDI 170
Query: 134 QQYWKDEIGSQPFTCYFNQHQRPDDVLLHRTHDEIVLLHCFLWPLVTFVVGVLIVVLTIC 193
++++ + G+ PF+C+++ + +DV+L + +D++ + HC WP +T + G LIV +
Sbjct: 171 KEFFDHKNGT-PFSCFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRL 229
Query: 194 AKSLAVKAE 202
+ L++ E
Sbjct: 230 TQHLSLLCE 238
>gi|25952102 calcium-activated potassium channel beta 3 subunit
isoform b [Homo sapiens]
Length = 257
Score = 139 bits (349), Expect = 2e-33
Identities = 61/189 (32%), Positives = 109/189 (57%), Gaps = 1/189 (0%)
Query: 14 EDKSIRLGLFLIISGVVSLFIFGFCWLSPALQDLQATEANCTVLSVQQIGEVFECTFTCG 73
ED+++ LG ++ V+ F+ G L P + +Q E+ CT + + + +C FTCG
Sbjct: 33 EDRAVMLGFAMMGFSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCG 92
Query: 74 ADCRGTSQYPCVQVYVNNSESNSRALLHSDEHQLLTNPKCSYIPPCKRENQKNLESVMNW 133
C G +YPC+QV+VN S +ALLH +E + NPKC Y P C ++ L S ++
Sbjct: 93 VHCHGQGKYPCLQVFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDI 152
Query: 134 QQYWKDEIGSQPFTCYFNQHQRPDDVLLHRTHDEIVLLHCFLWPLVTFVVGVLIVVLTIC 193
++++ + G+ PF+C+++ + +DV+L + +D++ + HC WP +T + G LIV +
Sbjct: 153 KEFFDHKNGT-PFSCFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRL 211
Query: 194 AKSLAVKAE 202
+ L++ E
Sbjct: 212 TQHLSLLCE 220
>gi|25952099 calcium-activated potassium channel beta 3 subunit
isoform a [Homo sapiens]
Length = 277
Score = 139 bits (349), Expect = 2e-33
Identities = 61/189 (32%), Positives = 109/189 (57%), Gaps = 1/189 (0%)
Query: 14 EDKSIRLGLFLIISGVVSLFIFGFCWLSPALQDLQATEANCTVLSVQQIGEVFECTFTCG 73
ED+++ LG ++ V+ F+ G L P + +Q E+ CT + + + +C FTCG
Sbjct: 53 EDRAVMLGFAMMGFSVLMFFLLGTTILKPFMLSIQREESTCTAIHTDIMDDWLDCAFTCG 112
Query: 74 ADCRGTSQYPCVQVYVNNSESNSRALLHSDEHQLLTNPKCSYIPPCKRENQKNLESVMNW 133
C G +YPC+QV+VN S +ALLH +E + NPKC Y P C ++ L S ++
Sbjct: 113 VHCHGQGKYPCLQVFVNLSHPGQKALLHYNEEAVQINPKCFYTPKCHQDRNDLLNSALDI 172
Query: 134 QQYWKDEIGSQPFTCYFNQHQRPDDVLLHRTHDEIVLLHCFLWPLVTFVVGVLIVVLTIC 193
++++ + G+ PF+C+++ + +DV+L + +D++ + HC WP +T + G LIV +
Sbjct: 173 KEFFDHKNGT-PFSCFYSPASQSEDVILIKKYDQMAIFHCLFWPSLTLLGGALIVGMVRL 231
Query: 194 AKSLAVKAE 202
+ L++ E
Sbjct: 232 TQHLSLLCE 240
>gi|31317295 calcium-activated potassium channel beta 2 subunit
[Homo sapiens]
Length = 235
Score = 122 bits (307), Expect = 2e-28
Identities = 65/197 (32%), Positives = 105/197 (53%), Gaps = 12/197 (6%)
Query: 14 EDKSIRLGLFLIISGVVSLFIFGFCWLSPALQDLQATEANCTVLSVQQIGEVFECTFTCG 73
ED++I LGL +++ ++ F+ G L +Q + E+ CT+L+ I E F C+F+CG
Sbjct: 44 EDRAILLGLAMMVCSIMMYFLLGITLLRSYMQSVWTEESQCTLLNAS-ITETFNCSFSCG 102
Query: 74 ADCRGTSQYPCVQVYVNNSESNSRALLHSDEHQLLTNPKCSYIPPCKRENQKNLESV--- 130
DC SQYPC+QVYVN + S + LL+ E + N KCSYIP C + ++++ V
Sbjct: 103 PDCWKLSQYPCLQVYVNLTSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVV 162
Query: 131 -MNWQQYWKDEIGSQPFTCYFNQHQRPDDVLLHRTHDEIVLLHCFLWPLVTFVVGVLIVV 189
N+++Y Q F+CY + V+L + + VL H WP GV IV
Sbjct: 163 MENFRKY-------QHFSCYSDPEGNQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVA 215
Query: 190 LTICAKSLAVKAEAMKK 206
+ + L++ E +++
Sbjct: 216 MVKLTQYLSLLCERIQR 232
>gi|5031823 calcium-activated potassium channel beta 2 subunit [Homo
sapiens]
Length = 235
Score = 122 bits (307), Expect = 2e-28
Identities = 65/197 (32%), Positives = 105/197 (53%), Gaps = 12/197 (6%)
Query: 14 EDKSIRLGLFLIISGVVSLFIFGFCWLSPALQDLQATEANCTVLSVQQIGEVFECTFTCG 73
ED++I LGL +++ ++ F+ G L +Q + E+ CT+L+ I E F C+F+CG
Sbjct: 44 EDRAILLGLAMMVCSIMMYFLLGITLLRSYMQSVWTEESQCTLLNAS-ITETFNCSFSCG 102
Query: 74 ADCRGTSQYPCVQVYVNNSESNSRALLHSDEHQLLTNPKCSYIPPCKRENQKNLESV--- 130
DC SQYPC+QVYVN + S + LL+ E + N KCSYIP C + ++++ V
Sbjct: 103 PDCWKLSQYPCLQVYVNLTSSGEKLLLYHTEETIKINQKCSYIPKCGKNFEESMSLVNVV 162
Query: 131 -MNWQQYWKDEIGSQPFTCYFNQHQRPDDVLLHRTHDEIVLLHCFLWPLVTFVVGVLIVV 189
N+++Y Q F+CY + V+L + + VL H WP GV IV
Sbjct: 163 MENFRKY-------QHFSCYSDPEGNQKSVILTKLYSSNVLFHSLFWPTCMMAGGVAIVA 215
Query: 190 LTICAKSLAVKAEAMKK 206
+ + L++ E +++
Sbjct: 216 MVKLTQYLSLLCERIQR 232
>gi|4758626 potassium large conductance calcium-activated channel,
subfamily M, beta member 1 [Homo sapiens]
Length = 191
Score = 49.3 bits (116), Expect = 2e-06
Identities = 43/190 (22%), Positives = 79/190 (41%), Gaps = 16/190 (8%)
Query: 14 EDKSIRLGLFLIISGVVSLFIFGFCWLSPALQDLQATEANCTVLSVQQIGEVFECTFTCG 73
E +++ LG+ +++ V++ +I L + + E+ C ++ E
Sbjct: 13 ETRALCLGVTMVVCAVITYYILVTTVLPLYQKSVWTQESKCHLI---------ETNIRDQ 63
Query: 74 ADCRGTS--QYPCVQVYVNNSESNSRALLHSDEHQLLTNPKCSYIPPCKRENQKNLESVM 131
+ +G QYPC+ +VN S + A+L+ E N +CSYIP Q V
Sbjct: 64 EELKGKKVPQYPCL--WVNVSAAGRWAVLYHTEDTRDQNQQCSYIPGSVDNYQTARADVE 121
Query: 132 NWQQYWKDEIGSQPFTCYFNQHQRPDDVLLHRTHDEIVLLHCFLWPLVTFVVGVLIVVLT 191
+ ++++ Q F C+ VL R + LL WP G+LI+ +
Sbjct: 122 KVRAKFQEQ---QVFYCFSAPRGNETSVLFQRLYGPQALLFSLFWPTFLLTGGLLIIAMV 178
Query: 192 ICAKSLAVKA 201
+ L++ A
Sbjct: 179 KSNQYLSILA 188
>gi|212549782 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 30.8 bits (68), Expect = 0.87
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 44 LQDLQATEANCTVLSVQQIGEVFECTFTCGADCRGTSQYPCVQVYVNNSESNSRALLHSD 103
L + QA+ ++S Q+GE+F+ G+D +S N S L +
Sbjct: 1292 LTEQQASSLTFNLVSDAQMGEIFKSLLQ-GSDLLDSSV---------NCTEKSEWELKTP 1341
Query: 104 EHQLLTNPKCSYIPPCKRE 122
E QLL KC IP C E
Sbjct: 1342 EKQLLETLKCESIPACTTE 1360
>gi|6912288 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 30.8 bits (68), Expect = 0.87
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 44 LQDLQATEANCTVLSVQQIGEVFECTFTCGADCRGTSQYPCVQVYVNNSESNSRALLHSD 103
L + QA+ ++S Q+GE+F+ G+D +S N S L +
Sbjct: 1292 LTEQQASSLTFNLVSDAQMGEIFKSLLQ-GSDLLDSSV---------NCTEKSEWELKTP 1341
Query: 104 EHQLLTNPKCSYIPPCKRE 122
E QLL KC IP C E
Sbjct: 1342 EKQLLETLKCESIPACTTE 1360
>gi|212549532 caspase 8 associated protein 2 [Homo sapiens]
Length = 1982
Score = 30.8 bits (68), Expect = 0.87
Identities = 24/79 (30%), Positives = 34/79 (43%), Gaps = 10/79 (12%)
Query: 44 LQDLQATEANCTVLSVQQIGEVFECTFTCGADCRGTSQYPCVQVYVNNSESNSRALLHSD 103
L + QA+ ++S Q+GE+F+ G+D +S N S L +
Sbjct: 1292 LTEQQASSLTFNLVSDAQMGEIFKSLLQ-GSDLLDSSV---------NCTEKSEWELKTP 1341
Query: 104 EHQLLTNPKCSYIPPCKRE 122
E QLL KC IP C E
Sbjct: 1342 EKQLLETLKCESIPACTTE 1360
>gi|161019170 mucin 5AC [Homo sapiens]
Length = 6207
Score = 29.3 bits (64), Expect = 2.5
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 38 CWLSPALQDLQATEANCTVLSVQQIGEVFECTFTCGADCRGTSQ 81
CW A + ++ N +S+ Q+G+V C+ G C+ Q
Sbjct: 2515 CW---APKSIECRAENYPEVSIDQVGQVLTCSLETGLTCKNEDQ 2555
>gi|169214831 PREDICTED: zinc finger protein 840 [Homo sapiens]
Length = 980
Score = 29.3 bits (64), Expect = 2.5
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 84 CVQVYVNNSESNSRALLHSDEHQLL---------TNPKCSYIPPCKRENQKNLESVMNWQ 134
C + + NNS N +H+ E + N K S + + + +SV N
Sbjct: 742 CGKRFNNNSNLNKHKKIHTGEKHFVCNQCGKAFSLNSKLSRHQRTHNKKENSSKSVSNLN 801
Query: 135 QYWKDEIGSQPFTC 148
++ K G +PF C
Sbjct: 802 KHQKTHAGEKPFPC 815
>gi|169215032 PREDICTED: zinc finger protein 840 [Homo sapiens]
Length = 980
Score = 29.3 bits (64), Expect = 2.5
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 84 CVQVYVNNSESNSRALLHSDEHQLL---------TNPKCSYIPPCKRENQKNLESVMNWQ 134
C + + NNS N +H+ E + N K S + + + +SV N
Sbjct: 742 CGKRFNNNSNLNKHKKIHTGEKHFVCNQCGKAFSLNSKLSRHQRTHNKKENSSKSVSNLN 801
Query: 135 QYWKDEIGSQPFTC 148
++ K G +PF C
Sbjct: 802 KHQKTHAGEKPFPC 815
>gi|169214556 PREDICTED: zinc finger protein 840 [Homo sapiens]
Length = 980
Score = 29.3 bits (64), Expect = 2.5
Identities = 18/74 (24%), Positives = 30/74 (40%), Gaps = 9/74 (12%)
Query: 84 CVQVYVNNSESNSRALLHSDEHQLL---------TNPKCSYIPPCKRENQKNLESVMNWQ 134
C + + NNS N +H+ E + N K S + + + +SV N
Sbjct: 742 CGKRFNNNSNLNKHKKIHTGEKHFVCNQCGKAFSLNSKLSRHQRTHNKKENSSKSVSNLN 801
Query: 135 QYWKDEIGSQPFTC 148
++ K G +PF C
Sbjct: 802 KHQKTHAGEKPFPC 815
>gi|153945878 mucin 5, subtype B, tracheobronchial [Homo sapiens]
Length = 5765
Score = 29.3 bits (64), Expect = 2.5
Identities = 12/44 (27%), Positives = 21/44 (47%), Gaps = 3/44 (6%)
Query: 38 CWLSPALQDLQATEANCTVLSVQQIGEVFECTFTCGADCRGTSQ 81
CW A + ++ N +S+ Q+G+V C+ G C+ Q
Sbjct: 1825 CW---APKSIECRAENYPEVSIDQVGQVLTCSLETGLTCKNEDQ 1865
>gi|236463300 hypothetical protein LOC79846 isoform 2 [Homo sapiens]
Length = 923
Score = 28.5 bits (62), Expect = 4.3
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 39 WLSPALQDLQATEANCTVLSVQQIGEVFECTFTCGADCRGTSQYPCVQVYVNNSESNSRA 98
W+ LQ L +E NCT++ Q CT D G + ++ N E +S+
Sbjct: 198 WVLKVLQHLSTSEVNCTIMMKAQAASGI-CTHLNDPDPSGQLLFRSSEILWNLLEKSSK- 255
Query: 99 LLHSDEHQLLTNPKC 113
+ Q L+N +C
Sbjct: 256 ---EEVIQQLSNLEC 267
>gi|236463164 hypothetical protein LOC79846 isoform 1 [Homo sapiens]
Length = 941
Score = 28.5 bits (62), Expect = 4.3
Identities = 20/75 (26%), Positives = 32/75 (42%), Gaps = 5/75 (6%)
Query: 39 WLSPALQDLQATEANCTVLSVQQIGEVFECTFTCGADCRGTSQYPCVQVYVNNSESNSRA 98
W+ LQ L +E NCT++ Q CT D G + ++ N E +S+
Sbjct: 216 WVLKVLQHLSTSEVNCTIMMKAQAASGI-CTHLNDPDPSGQLLFRSSEILWNLLEKSSK- 273
Query: 99 LLHSDEHQLLTNPKC 113
+ Q L+N +C
Sbjct: 274 ---EEVIQQLSNLEC 285
>gi|4507693 tuberous sclerosis 1 protein isoform 1 [Homo sapiens]
Length = 1164
Score = 27.7 bits (60), Expect = 7.4
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 99 LLHSDEHQLLTNPKCSYIPPCKRENQKNLESVMNWQQYWKDEIGSQ 144
L HSD++ ++ P+ + PP K E + ++ Q + ++ GS+
Sbjct: 400 LCHSDDYVHISLPQATVTPPRKEERMDSARPCLHRQHHLLNDRGSE 445
>gi|241666464 tuberous sclerosis 1 protein isoform 4 [Homo sapiens]
Length = 1113
Score = 27.7 bits (60), Expect = 7.4
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 99 LLHSDEHQLLTNPKCSYIPPCKRENQKNLESVMNWQQYWKDEIGSQ 144
L HSD++ ++ P+ + PP K E + ++ Q + ++ GS+
Sbjct: 349 LCHSDDYVHISLPQATVTPPRKEERMDSARPCLHRQHHLLNDRGSE 394
>gi|241666462 tuberous sclerosis 1 protein isoform 3 [Homo sapiens]
Length = 1163
Score = 27.7 bits (60), Expect = 7.4
Identities = 12/46 (26%), Positives = 25/46 (54%)
Query: 99 LLHSDEHQLLTNPKCSYIPPCKRENQKNLESVMNWQQYWKDEIGSQ 144
L HSD++ ++ P+ + PP K E + ++ Q + ++ GS+
Sbjct: 399 LCHSDDYVHISLPQATVTPPRKEERMDSARPCLHRQHHLLNDRGSE 444
>gi|153791244 hypothetical protein LOC55237 [Homo sapiens]
Length = 702
Score = 27.7 bits (60), Expect = 7.4
Identities = 19/89 (21%), Positives = 40/89 (44%), Gaps = 8/89 (8%)
Query: 85 VQVYVNNSESNSRALLHSDEHQLLTNPKCSYIPPCKRENQKNLESVMNWQQYWKDEIGSQ 144
+Q ++ SR+ ++ +H+LL + C +PP + + LE + ++++ +
Sbjct: 332 LQQFLQRFPEISRSTYYAWKHELLGSGTCPALPPREVLGMEELEKLP------EEQVAEE 385
Query: 145 PFTCYFNQHQRPDDVLLHRTHDEIVLLHC 173
C P VL+ R ++ L HC
Sbjct: 386 ELECSALAVSSPGMVLMQRA--KLYLEHC 412
>gi|154354998 inositol 1,4,5-triphosphate receptor, type 1 isoform 1
[Homo sapiens]
Length = 2710
Score = 27.3 bits (59), Expect = 9.6
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 95 NSRALLHSDEHQLLTNPKCSYIPPCKRENQKNLESVMNWQQYWKDEI 141
N+ LH+ HQL+ NP C+ + + M W KD+I
Sbjct: 188 NAGQPLHASSHQLVDNPGCNEVNSVNCNTSWKIVLFMKWSDN-KDDI 233
>gi|154354996 inositol 1,4,5-triphosphate receptor, type 1 isoform 2
[Homo sapiens]
Length = 2695
Score = 27.3 bits (59), Expect = 9.6
Identities = 14/47 (29%), Positives = 21/47 (44%), Gaps = 1/47 (2%)
Query: 95 NSRALLHSDEHQLLTNPKCSYIPPCKRENQKNLESVMNWQQYWKDEI 141
N+ LH+ HQL+ NP C+ + + M W KD+I
Sbjct: 188 NAGQPLHASSHQLVDNPGCNEVNSVNCNTSWKIVLFMKWSDN-KDDI 233
>gi|9506745 urotensin 2 receptor [Homo sapiens]
Length = 389
Score = 27.3 bits (59), Expect = 9.6
Identities = 19/57 (33%), Positives = 25/57 (43%), Gaps = 4/57 (7%)
Query: 39 WLSP----ALQDLQATEANCTVLSVQQIGEVFECTFTCGADCRGTSQYPCVQVYVNN 91
W SP +L+DL AT T+LS + V +T CR + VYV N
Sbjct: 36 WASPTEPSSLEDLVATGTIGTLLSAMGVVGVVGNAYTLVVTCRSLRAVASMYVYVVN 92
>gi|154090976 sterile alpha and TIR motif containing 1 [Homo
sapiens]
Length = 724
Score = 27.3 bits (59), Expect = 9.6
Identities = 15/46 (32%), Positives = 23/46 (50%), Gaps = 4/46 (8%)
Query: 127 LESVMNWQ----QYWKDEIGSQPFTCYFNQHQRPDDVLLHRTHDEI 168
L SV +W+ Q W +IG + F + Q D+LL T +E+
Sbjct: 406 LPSVPSWKEAEVQTWLQQIGFSKYCESFREQQVDGDLLLRLTEEEL 451
Database: hs.faa
Posted date: Aug 4, 2009 4:42 PM
Number of letters in database: 18,247,518
Number of sequences in database: 37,866
Lambda K H
0.324 0.136 0.432
Gapped
Lambda K H
0.267 0.0410 0.140
Matrix: BLOSUM62
Gap Penalties: Existence: 11, Extension: 1
Number of Hits to DB: 7,785,187
Number of Sequences: 37866
Number of extensions: 318116
Number of successful extensions: 992
Number of sequences better than 10.0: 26
Number of HSP's better than 10.0 without gapping: 11
Number of HSP's successfully gapped in prelim test: 15
Number of HSP's that attempted gapping in prelim test: 960
Number of HSP's gapped (non-prelim): 38
length of query: 210
length of database: 18,247,518
effective HSP length: 98
effective length of query: 112
effective length of database: 14,536,650
effective search space: 1628104800
effective search space used: 1628104800
T: 11
A: 40
X1: 15 ( 7.0 bits)
X2: 38 (14.6 bits)
X3: 64 (24.7 bits)
S1: 40 (21.6 bits)
S2: 59 (27.3 bits)
Search results were obtained with NCBI BLAST and RefSeq entries.
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Guide to the Human Genome
Copyright © 2010 by Stewart Scherer. All rights reserved.